Formation of Dynamic γ-H2AX Domains along Broken DNA Strands Is Distinctly Regulated by ATM and MDC1 and Dependent upon H2AX Densities in Chromatin
Open accessAbstract
A hallmark of the cellular response to DNA double-strand breaks (DSBs) is histone H2AX phosphorylation in chromatin to generate gamma-H2AX. Here, we demonstrate that gamma-H2AX densities increase transiently along DNA strands as they are broken and repaired in G1 phase cells. The region across which gamma-H2AX forms does not spread as DSBs persist; rather, gamma-H2AX densities equilibrate at distinct levels within a fixed distance from DNA ends. Although both ATM and DNA-PKcs generate gamma-H2AX, only ATM promotes gamma-H2AX formation to maximal distance and maintains gamma-H2AX densities. MDC1 is essential for gamma-H2AX formation at high densities near DSBs, but not for generation of gamma-H2AX over distal sequences. Reduced H2AX levels in chromatin impair the density, but not the distance, of gamma-H2AX formed. Our data suggest that H2AX fuels a gamma-H2AX self-reinforcing mechanism that retains MDC1 and activated ATM in chromatin near DSBs and promotes continued local phosphorylation of H2AX.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
ATR and ATM phosphorylate histone H2AX at Ser-139 (γH2AX) in response to DNA double-strand breaks, and γH2AX spreads along DNA up to 200-400 kb and helps recruit proteins involved in DNA damage repair and checkpoint activation.
“ATR and ATM also phosphorylate histone H2AX at Ser-139 (γH2AX) in response to DNA double-strand breaks (DSBs), which spreads along the DNA up to 200–400 kb and helps in the recruitment of proteins involved in DNA damage repair and checkpoint activation [29].”
From ATR- and ATM-Mediated DNA Damage Response Is Dependent on Excision Repair Assembly during G1 but Not in S Phase of Cell Cycle (2016) · cites this paper as [29]
ATR and ATM allow H2AX phosphorylation and spreading at damage sites, which changes chromatin structure near the damage and executes DNA repair through the HR pathway.
“Additionally, it is well established that ATR and ATM allow H2AX phosphorylation and spreading at the damage site, which changes the chromatin structure near the damage site and executes DNA repair through the HR pathway [21-23, 26, 63].”
From NER initiation factors, DDB2 and XPC, regulate UV radiation response by recruiting ATR and ATM kinases to DNA damage sites (2013) · cites this paper as [21]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139
Rogakou, E. P., Pilch, D. R., Orr, A. H., Ivanova, V. S., & Bonner, W. M. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.10.5858 · Cited by 5,438 · see citing works
RAG-2-deficient mice lack mature lymphocytes owing to inability to initiate V(D)J rearrangement
Shinkai, Y. (1992) · Cell · doi:10.1016/0092-8674(92)90029-c · Cited by 2,651 · see citing works
Megabase Chromatin Domains Involved in DNA Double-Strand Breaks in Vivo
Rogakou, E. P., Boon, C., Redon, C., & Bonner, W. M. (1999) · The Journal of Cell Biology · doi:10.1083/jcb.146.5.905 · Cited by 2,422 · see citing works
A critical role for histone H2AX in recruitment of repair factors to nuclear foci after DNA damage
Paull, T. T., Rogakou, E. P., Yamazaki, V., Kirchgessner, C. U., Gellert, M., & Bonner, W. M. (2000) · Current Biology · doi:10.1016/s0960-9822(00)00610-2 · Cited by 2,098 · see citing works
ATM Phosphorylates Histone H2AX in Response to DNA Double-strand Breaks
Burma, S., Chen, B. P., Murphy, M., Kurimasa, A., & Chen, D. J. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.c100466200 · Cited by 1,954 · see citing works
Genomic Instability in Mice Lacking Histone H2AX
Celeste, A., Petersen, S., Romanienko, P. J., Fernandez-Capetillo, O., Chen, H. T., Sedelnikova, O. A., Reina-San-Martin, B., Coppola, V., Meffre, E., Difilippantonio, M. J., et al. (2002) · Science · doi:10.1126/science.1069398 · Cited by 1,385 · see citing works
A Critical Role for Dnmt1 and DNA Methylation in T Cell Development, Function, and Survival
Lee, P. P., Fitzpatrick, D. R., Beard, C., Jessup, H. K., Lehar, S. M., Makar, K. W., Pérez‐Melgosa, M., Sweetser, M. T., Schlissel, M. S., Nguyen, S. P., et al. (2001) · Immunity · doi:10.1016/s1074-7613(01)00227-8 · Cited by 1,280 · see citing works
-H2AX in recognition and signaling of DNA double-strand breaks in the context of chromatin
Kinner, A., Wu, W., Staudt, C., & Iliakis, G. E. (2008) · Nucleic Acids Research · doi:10.1093/nar/gkn550 · Cited by 1,249 · see citing works
Hickson, I., Zhao, Y., Richardson, C. J., Green, S. J., Martin, N. M. B., Orr, A. I., Reaper, P. M., Jackson, S. P., Curtin, N. J., & Smith, G. C. M. (2004) · Cancer Research · doi:10.1158/0008-5472.can-04-2727 · Cited by 1,220 · see citing works
Ma, Y., Pannicke, U., Schwarz, K., & Lieber, M. R. (2002) · Cell · doi:10.1016/s0092-8674(02)00671-2 · Cited by 1,166 · see citing works
RNF8 Ubiquitylates Histones at DNA Double-Strand Breaks and Promotes Assembly of Repair Proteins
Mailand, N., Bekker‐Jensen, S., Kildegaard, H. F., Melander, F., Bártek, J., Lukas, C., & Lukas, J. (2007) · Cell · doi:10.1016/j.cell.2007.09.040 · Cited by 1,151 · see citing works
Stucki, M., Clapperton, J. A., Mohammad, D. H., Yaffe, M. B., Smerdon, S. J., & Jackson, S. P. (2005) · Cell · doi:10.1016/j.cell.2005.09.038 · Cited by 1,103 · see citing works
Jonkers, J., Meuwissen, R. L. J., van der Gulden, H. M. L., Peterse, H. L., van der Valk, M., & Berns, A. J. M. (2001) · Nature Genetics · doi:10.1038/ng747 · Cited by 1,053 · see citing works
RNF8 Transduces the DNA-Damage Signal via Histone Ubiquitylation and Checkpoint Protein Assembly
Huen, M. S. Y., Grant, R. A., Manke, I. A., Minn, K. T., Yu, X., Yaffe, M. B., & Chen, J. (2007) · Cell · doi:10.1016/j.cell.2007.09.041 · Cited by 1,027 · see citing works
ATM and DNA-PK Function Redundantly to Phosphorylate H2AX after Exposure to Ionizing Radiation
Stiff, T., O’Driscoll, M., Rief, N., Iwabuchi, K., Löbrich, M., & Jeggo, P. A. (2004) · Cancer Research · doi:10.1158/0008-5472.can-03-3207 · Cited by 1,010 · see citing works
Histone H2AX phosphorylation is dispensable for the initial recognition of DNA breaks
Celeste, A., Fernandez-Capetillo, O., Kruhlak, M. J., Pilch, D. R., Staudt, D. W., Lee, A., Bonner, R. F., Bonner, W. M., & Nussenzweig, A. (2003) · Nature Cell Biology · doi:10.1038/ncb1004 · Cited by 989 · see citing works
The Mechanism and Regulation of Chromosomal V(D)J Recombination
Bassing, C. H., Swat, W., & Alt, F. W. (2002) · Cell · doi:10.1016/s0092-8674(02)00675-x · Cited by 968 · see citing works
Self-citationMDC1 is a mediator of the mammalian DNA damage checkpoint
Stewart, G. S., Wang, B., Bignell, C. R., Taylor, A. M. R., & Elledge, S. J. (2003) · Nature · doi:10.1038/nature01446 · Cited by 874 · see citing works
Acetylation by Tip60 Is Required for Selective Histone Variant Exchange at DNA Lesions
Kusch, T., Florens, L. A., McDonald, W. H., Swanson, S. K., Glaser, R. L., Yates, J. R., Abmayr, S. M., Washburn, M. P., & Workman, J. L. (2004) · Science · doi:10.1126/science.1103455 · Cited by 669 · see citing works
A role for Saccharomyces cerevisiae histone H2A in DNA repair
Downs, J. A., Lowndes, N. F., & Jackson, S. P. (2000) · Nature · doi:10.1038/35050000 · Cited by 650 · see citing works
DNA damage-induced G2–M checkpoint activation by histone H2AX and 53BP1
Fernández-Capetillo, Ó., Chen, H. T., Celeste, A., Ward, I. M., Romanienko, P. J., Morales, J. C., Naka, K., Xia, Z., Camerini‐Otero, R. D., Motoyama, N., et al. (2002) · Nature Cell Biology · doi:10.1038/ncb884 · Cited by 644 · see citing works
Lou, Z., Minter‐Dykhouse, K., Franco, S., Gostissa, M., Rivera, M. A., Celeste, A., Manis, J. P., van Deursen, J., Nussenzweig, A., Paull, T. T., et al. (2006) · Molecular Cell · doi:10.1016/j.molcel.2005.11.025 · Cited by 629 · see citing works
Ünal, E., Arbel‐Eden, A., Sattler, U., Shroff, R., Lichten, M., Haber, J. E., & Koshland, D. E. (2004) · Molecular Cell · doi:10.1016/j.molcel.2004.11.027 · Cited by 568 · see citing works
γ-H2AX Dephosphorylation by Protein Phosphatase 2A Facilitates DNA Double-Strand Break Repair
Chowdhury, D., Keogh, M., Ishii, H., Peterson, C. L., Buratowski, S., & Lieberman, J. (2005) · Molecular Cell · doi:10.1016/j.molcel.2005.10.003 · Cited by 552 · see citing works
H2AX Haploinsufficiency Modifies Genomic Stability and Tumor Susceptibility
Celeste, A., Difilippantonio, S., Difilippantonio, M. J., Fernández-Capetillo, Ó., Pilch, D. R., Sedelnikova, O. A., Eckhaus, M., Ried, T., Bonner, W. M., & Nussenzweig, A. (2003) · Cell · doi:10.1016/s0092-8674(03)00567-1 · Cited by 548 · see citing works
Monoclonal mice generated by nuclear transfer from mature B and T donor cells
Hochedlinger, K., & Jaenisch, R. (2002) · Nature · doi:10.1038/nature718 · Cited by 536 · see citing works
Increased ionizing radiation sensitivity and genomic instability in the absence of histone H2AX
Bassing, C. H., Chua, K. F., Sekiguchi, J., Suh, H., Whitlow, S. R., Fleming, J. C., Monroe, B., Ciccone, D. N., Yan, C. T., Vlasáková, K., et al. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.122228699 · Cited by 525 · see citing works
Self-citationDistribution and Dynamics of Chromatin Modification Induced by a Defined DNA Double-Strand Break
Shroff, R., Arbel‐Eden, A., Pilch, D. R., Ira, G., Bonner, W. M., Petrini, J. H. J., Haber, J. E., & Lichten, M. (2004) · Current Biology · doi:10.1016/j.cub.2004.09.047 · Cited by 499 · see citing works
Bassing, C. H., Suh, H., Ferguson, D. O., Chua, K. F., Manis, J. P., Eckersdorff, M., Gleason, M., Bronson, R. T., Lee, C., & Alt, F. W. (2003) · Cell · doi:10.1016/s0092-8674(03)00566-x · Cited by 480 · see citing works
Self-citationATM stabilizes DNA double-strand-break complexes during V(D)J recombination
Bredemeyer, A. L., Sharma, G. G., Huang, C., Helmink, B. A., Walker, L. M., Khor, K. C., Nuskey, B., Sullivan, K. E., Pandita, T. K., Bassing, C. H., et al. (2006) · Nature · doi:10.1038/nature04866 · Cited by 425 · see citing works
Self-citationγH2AX and MDC1: Anchoring the DNA-damage-response machinery to broken chromosomes
Stucki, M., & Jackson, S. P. (2006) · DNA Repair · doi:10.1016/j.dnarep.2006.01.012 · Cited by 412 · see citing works
DNA Damage-Dependent Acetylation and Ubiquitination of H2AX Enhances Chromatin Dynamics
Ikura, T., Tashiro, S., Kakino, A., Shima, H., Jacob, N. K., Amunugama, R., Yoder, K. E., Izumi, S., Kuraoka, I., Tanaka, K., et al. (2007) · Molecular and Cellular Biology · doi:10.1128/mcb.00579-07 · Cited by 376 · see citing works
Role of genomic instability and p53 in AID-induced c-myc–Igh translocations
Ramiro, A. R., Janković, M., Callén, E., Difilippantonio, S., Chen, H.-T., McBride, K. M., Eisenreich, T., Chen, J., Dickins, R. A., Lowe, S. W., et al. (2006) · Nature · doi:10.1038/nature04495 · Cited by 346 · see citing works
Response to RAG-Mediated V(D)J Cleavage by NBS1 and γ-H2AX
Chen, H. T., Bhandoola, A., Difilippantonio, M. J., Zhu, J., Brown, M. J., Tai, X., Rogakou, E. P., Brotz, T. M., Bonner, W. M., Ried, T., et al. (2000) · Science · doi:10.1126/science.290.5498.1962 · Cited by 318 · see citing works
H2AX Prevents DNA Breaks from Progressing to Chromosome Breaks and Translocations
Franco, S., Gostissa, M., Zha, S., Lombard, D. B., Murphy, M. M., Zarrin, A. A., Yan, C., Tepsuporn, S., Morales, J. C., Adams, M. M., et al. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.01.005 · Cited by 282 · see citing works
Self-citationLeaky Scid Phenotype Associated with Defective V(D)J Coding End Processing in Artemis-Deficient Mice
Rooney, S., Sekiguchi, J., Zhu, C., Cheng, H.-L., Manis, J. P., Whitlow, S. R., DeVido, J., Foy, D., Chaudhuri, J., Lombard, D. B., et al. (2002) · Molecular Cell · doi:10.1016/s1097-2765(02)00755-4 · Cited by 278 · see citing works
Nuclear Retention of ATM at Sites of DNA Double Strand Breaks
Andegeko, Y., Moyal, L., Rotman, G., Shiloh, Y., Mittelman, L., & Tsarfaty, I. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m102986200 · Cited by 276 · see citing works
V(D)J recombination activates a p53-dependent DNA damage checkpoint in scid lymphocyte precursors.Preprint
Guidos, C. J., Williams, C. J., Grandal, I., Knowles, G. C., Huang, M. T. F., & Danska, J. S. (1996) · Genes & Development · doi:10.1101/gad.10.16.2038 · Cited by 272 · see citing works
Heo, K., Kim, H., Choi, S. H., Choi, J., Kim, K., Gu, J., Lieber, M. R., Yang, A. S., & An, W. (2008) · Molecular Cell · doi:10.1016/j.molcel.2008.02.029 · Cited by 263 · see citing works
A PP4-Phosphatase Complex Dephosphorylates γ-H2AX Generated during DNA Replication
Chowdhury, D., Xu, X., Zhong, X., Ahmed, F., Zhong, J., Liao, J., Dykxhoorn, D. M., Weinstock, D. M., Pfeifer, G. P., & Lieberman, J. (2008) · Molecular Cell · doi:10.1016/j.molcel.2008.05.016 · Cited by 248 · see citing works
HIF-1: A Target For Cancer, Ischemia and Inflammation—Too Good to be True?
Melillo, G. (2004) · Cell Cycle · doi:10.4161/cc.3.2.689 · Cited by 247 · see citing works
Control of Sister Chromatid Recombination by Histone H2AX
Xie, A., Puget, N., Shim, I., Odate, S., Jarzyna, I., Bassing, C. H., Alt, F. W., & Scully, R. (2004) · Molecular Cell · doi:10.1016/j.molcel.2004.12.007 · Cited by 208 · see citing works
Self-citationH2AX May Function as an Anchor to Hold Broken Chromosomal DNA Ends in Close Proximity
Bassing, C. H., & Alt, F. W. (2004) · Cell Cycle · doi:10.4161/cc.3.2.684 · Cited by 177 · see citing works
Self-citationMuljo, S. A., & Schlissel, M. S. (2002) · Nature Immunology · doi:10.1038/ni870 · Cited by 164 · see citing works
DNA double-strand breaks activate a multi-functional genetic program in developing lymphocytes
Bredemeyer, A. L., Helmink, B. A., Innes, C. L., Calderón, B., McGinnis, L. M., Mahowald, G. K., Gapud, E. J., Walker, L. M., Collins, J. B., Weaver, B. K., et al. (2008) · Nature · doi:10.1038/nature07392 · Cited by 147 · see citing works
Self-citationH2AX chromatin structures and their response to DNA damage revealed by 4Pi microscopy
Bewersdorf, J., Bennett, B. T., & Knight, K. L. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0608709103 · Cited by 121 · see citing works
Kimurâ, H., Takizawa, N., Allemand, E., Hori, T., Iborra, F. J., Nozaki, N., Muraki, M., Hagiwara, M., Krainer, A. R., Fukagawa, T., et al. (2006) · The Journal of Cell Biology · doi:10.1083/jcb.200608001 · Cited by 81 · see citing works
Bassing, C. H., Ranganath, S. H., Murphy, M., Savic, V., Gleason, M., & Alt, F. W. (2007) · Blood · doi:10.1182/blood-2007-08-104760 · Cited by 18 · see citing works
Self-citation
Flagged first, then by citations
Cited by
Sorted by citations
The ATM protein kinase: regulating the cellular response to genotoxic stress, and more
Shiloh, Y., & Ziv, Y. (2013) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3546 · Cited by 1,649 · see citing works
γH2AX: a sensitive molecular marker of DNA damage and repair
Mah, L.-J., El-Osta, A., & Karagiannis, T. C. (2010) · Leukemia · doi:10.1038/leu.2010.6 · Cited by 1,557 · see citing works
DNA Damage Sensing by the ATM and ATR Kinases
Marechal, A., & Zou, L. (2013) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a012716 · Cited by 1,514 · see citing works
Lukas, C., Savic, V., Bekker‐Jensen, S., Doil, C., Neumann, B., Pedersen, R. S., Grøfte, M., Chan, K., Hickson, I. D., Bártek, J., et al. (2011) · Nature Cell Biology · doi:10.1038/ncb2201 · Cited by 658 · see citing works
Self-citationLukas, J., Lukas, C., & Bartek, J. (2011) · Nature Cell Biology · doi:10.1038/ncb2344 · Cited by 645 · see citing works
Chromatin Remodeling at DNA Double-Strand Breaks
Price, B. D., & D’Andrea, A. D. (2013) · Cell · doi:10.1016/j.cell.2013.02.011 · Cited by 588 · see citing works
High‐resolution profiling of γH2AX around DNA double strand breaks in the mammalian genome
Iacovoni, J. S., Caron, P., Lassadi, I., Nicolas, E., Massip, L., Trouche, D., & Legube, G. (2010) · The EMBO Journal · doi:10.1038/emboj.2010.38 · Cited by 515 · see citing works
Identification of Early Replicating Fragile Sites that Contribute to Genome Instability
Barlow, J. H., Faryabi, R. B., Callén, E., Wong, N., Malhowski, A. J., Chen, H. T., Gutierrez-Cruz, G., Sun, H., McKinnon, P. J., Wright, G. W., et al. (2013) · Cell · doi:10.1016/j.cell.2013.01.006 · Cited by 433 · see citing works
Analysis of protein dynamics at active, stalled, and collapsed replication forksPreprint
Sirbu, B. M., Couch, F. B., Feigerle, J. T., Bhaskara, S., Hiebert, S. W., & Cortez, D. (2011) · Genes & Development · doi:10.1101/gad.2053211 · Cited by 442 · see citing works
Arabidopsis meiotic crossover hot spots overlap with H2A.Z nucleosomes at gene promoters
Choi, K., Zhao, X., Kelly, K. A., Venn, O., Higgins, J. D., Yelina, N. E., Hardcastle, T. J., Ziółkowski, P. A., Copenhaver, G. P., Franklin, F. C. H., et al. (2013) · Nature Genetics · doi:10.1038/ng.2766 · Cited by 375 · see citing works
Mechanisms of double-strand break repair in somatic mammalian cells
Hartlerode, A. J., & Scully, R. (2009) · Biochemical Journal · doi:10.1042/bj20090942 · Cited by 365 · see citing works
Thompson, L. H. (2012) · Mutation Research/Reviews in Mutation Research · doi:10.1016/j.mrrev.2012.06.002 · Cited by 357 · see citing works
Assembly and function of DNA double-strand break repair foci in mammalian cells
Bekker-Jensen, S., & Mailand, N. (2010) · DNA Repair · doi:10.1016/j.dnarep.2010.09.010 · Cited by 338 · see citing works
H2AX: functional roles and potential applications
Dickey, J. S., Redon, C. E., Nakamura, A. J., Baird, B. J., Sedelnikova, O. A., & Bonner, W. M. (2009) · Chromosoma · doi:10.1007/s00412-009-0234-4 · Cited by 320 · see citing works
Origin of Chromosomal Translocations in Lymphoid Cancer
Nussenzweig, A., & Nussenzweig, M. C. (2010) · Cell · doi:10.1016/j.cell.2010.03.016 · Cited by 315 · see citing works
Clouaire, T., Rocher, V., Lashgari, A., Arnould, C., Aguirrebengoa, M., Biernacka, A., Skrzypczak, M., Aymard, F., Fongang, B., Dojer, N., et al. (2018) · Molecular Cell · doi:10.1016/j.molcel.2018.08.020 · Cited by 300 · see citing works
Persistent γH2AX: A promising molecular marker of DNA damage and aging
Siddiqui, M. S., François, M., Fenech, M. F., & Leifert, W. R. (2015) · Mutation Research/Reviews in Mutation Research · doi:10.1016/j.mrrev.2015.07.001 · Cited by 266 · see citing works
MUS81 promotes common fragile site expression
Ying, S., Minocherhomji, S., Chan, K., Palmai‐Pallag, T., Chu, W. K., Wass, T., Mankouri, H. W., Liu, Y., & Hickson, I. D. (2013) · Nature Cell Biology · doi:10.1038/ncb2773 · Cited by 264 · see citing works
Double strand break repair functions of histone H2AX
Scully, R., & Xie, A. (2013) · Mutation research. Fundamental and molecular mechanisms of mutagenesis · doi:10.1016/j.mrfmmm.2013.07.007 · Cited by 251 · see citing works
Regulation of DNA End Joining, Resection, and Immunoglobulin Class Switch Recombination by 53BP1
Bothmer, A., Robbiani, D. F., Di Virgilio, M., Bunting, S. F., Klein, I. A., Feldhahn, N., Barlow, J., Chen, H.-T., Bosque, D., Callen, E., et al. (2011) · Molecular Cell · doi:10.1016/j.molcel.2011.03.019 · Cited by 244 · see citing works
DNA double-strand breaks induce H2Ax phosphorylation domains in a contact-dependent manner
Collins, P. L., Purman, C. E., Porter, S. I., Nganga, V. K., Saini, A., Hayer, K. E., Gurewitz, G. L., Sleckman, B. P., Bednarski, J. J., Bassing, C. H., et al. (2020) · Nature Communications · doi:10.1038/s41467-020-16926-x · Cited by 215 · see citing works
Self-citationCremona, C. A., & Behrens, A. (2013) · Oncogene · doi:10.1038/onc.2013.275 · Cited by 206 · see citing works
The Response to and Repair of RAG-Mediated DNA Double-Strand Breaks
Helmink, B. A., & Sleckman, B. P. (2012) · Annual Review of Immunology · doi:10.1146/annurev-immunol-030409-101320 · Cited by 183 · see citing works
Self-citationEpigenetic Modifications in Double-Strand Break DNA Damage Signaling and Repair
Rossetto, D., Truman, A. W., Kron, S. J., & Côté, J. (2010) · Clinical Cancer Research · doi:10.1158/1078-0432.ccr-10-0513 · Cited by 174 · see citing works
Checkpoint Responses to DNA Double-Strand Breaks
Waterman, D. P., Haber, J. E., & Smolka, M. B. (2020) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-011520-104722 · Cited by 178 · see citing works
Chromatin dynamics and the repair of DNA double strand breaks
Xu, Y., & Price, B. D. (2011) · Cell Cycle · doi:10.4161/cc.10.2.14543 · Cited by 166 · see citing works
ATM-Dependent Phosphorylation of All Three Members of the MRN Complex: From Sensor to Adaptor
Lavin, M. F., Kozlov, S., Gatei, M. H., & Kijas, A. W. (2015) · Biomolecules · doi:10.3390/biom5042877 · Cited by 152 · see citing works
Trial Watch: Targeting ATM–CHK2 and ATR–CHK1 pathways for anticancer therapy
Manic, G., Obrist, F., Sistigu, A., & Vitale, I. (2015) · Molecular & Cellular Oncology · doi:10.1080/23723556.2015.1012976 · Cited by 147 · see citing works
ATM kinase: Much more than a DNA damage responsive protein
Guleria, A., & Chandna, S. (2015) · DNA repair · doi:10.1016/j.dnarep.2015.12.009 · Cited by 145 · see citing works
H2AX prevents CtIP-mediated DNA end resection and aberrant repair in G1-phase lymphocytes
Helmink, B. A., Tubbs, A., Dorsett, Y., Bednarski, J. J., Walker, L. M., Feng, Z., Sharma, G. G., McKinnon, P. J., Zhang, J., Bassing, C. H., et al. (2010) · Nature · doi:10.1038/nature09585 · Cited by 143 · see citing works
Self-citationCohesin Protects Genes against γH2AX Induced by DNA Double-Strand Breaks
Caron, P., Aymard, F., Iacovoni, J. S., Briois, S., Canitrot, Y., Bugler, B., Massip, L., Losada, A., & Legube, G. (2012) · PLoS Genetics · doi:10.1371/journal.pgen.1002460 · Cited by 135 · see citing works
Chromatin modifications and DNA repair: beyond double-strand breaks
House, N. C. M., Koch, M. R., & Freudenreich, C. H. (2014) · Frontiers in Genetics · doi:10.3389/fgene.2014.00296 · Cited by 128 · see citing works
The Chromatin Response to DNA Breaks: Leaving a Mark on Genome Integrity
Smeenk, G., & van Attikum, H. (2013) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-061809-174504 · Cited by 125 · see citing works
The DNA Damage Response in Neurons: Die by Apoptosis or Survive in a Senescence-Like State?
Fielder, E., von Zglinicki, T., & Jurk, D. (2017) · Journal of Alzheimer's Disease · doi:10.3233/jad-161221 · Cited by 126 · see citing works
Zhang, Y., Gostissa, M., Hildebrand, D. G., Becker, M. S., Boboilă, C., Chiarle, R., Lewis, S. M., & Alt, F. W. (2010) · Advances in immunology · doi:10.1016/s0065-2776(10)06004-9 · Cited by 123 · see citing works
Non-redundant Functions of ATM and DNA-PKcs in Response to DNA Double-Strand Breaks
Caron, P., Choudjaye, J., Clouaire, T., Bugler, B., Daburon, V., Aguirrebengoa, M., Mangeat, T., Iacovoni, J. S., Álvarez-Quilón, A., Cortés‐Ledesma, F., et al. (2015) · Cell Reports · doi:10.1016/j.celrep.2015.10.024 · Cited by 124 · see citing works
ATM protein kinase: the linchpin of cellular defenses to stress
Bhatti, S., Kozlov, S., Farooqi, A. A., Naqi, A., Lavin, M., & Khanna, K. K. (2011) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-011-0683-9 · Cited by 116 · see citing works
A Snapshot on the Cis Chromatin Response to DNA Double-Strand Breaks
Clouaire, T., & Legube, G. (2019) · Trends in Genetics · doi:10.1016/j.tig.2019.02.003 · Cited by 107 · see citing works
Terahertz Photons Inhibit Cancer Cells Long Term by Suppressing Nano Telomerase Activity
Yin, J., Wu, K., Yu, Y., Zhong, Y., Song, Z., Chang, C., & Liu, G. (2024) · ACS Nano · doi:10.1021/acsnano.3c09216 · Cited by 107 · see citing works
MDC1: The art of keeping things in focus
Jungmichel, S., & Stucki, M. (2010) · Chromosoma · doi:10.1007/s00412-010-0266-9 · Cited by 101 · see citing works
Ray, A., Milum, K., Battu, A., Wani, G., & Wani, A. A. (2013) · DNA Repair · doi:10.1016/j.dnarep.2013.01.003 · Cited by 85 · see citing works
“Additionally, it is well established that ATR and ATM allow H2AX phosphorylation and spreading at the damage site, which changes the chromatin structure near the damage site and executes DNA repair through the HR pathway [21-23, 26, 63].”
BackgroundDNA-PKcs promotes chromatin decondensation to facilitate initiation of the DNA damage response
Lu, H., Saha, J., Beckmann, P. J., Hendrickson, E. A., & Davis, A. J. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz694 · Cited by 85 · see citing works
Moeglin, É., Desplancq, D., Conic, S., Oulad‐Abdelghani, M., Stoessel, A., Chiper, M., Vigneron, M., Didier, P., Tora, L., & Weiss, É. (2019) · Cancers · doi:10.3390/cancers11030355 · Cited by 84 · see citing works
Organizing DNA repair in the nucleus: DSBs hit the road
Marnef, A., & Legube, G. (2017) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2016.12.003 · Cited by 79 · see citing works
Ray, A., Mir, S. N., Wani, G., Zhao, Q., Battu, A., Zhu, Q., Wang, Q.-E., & Wani, A. A. (2009) · Molecular and Cellular Biology · doi:10.1128/mcb.00503-09 · Cited by 71 · see citing works
Impact of Histone H4 Lysine 20 Methylation on 53BP1 Responses to Chromosomal Double Strand Breaks
Hartlerode, A. J., Guan, Y., Rajendran, A., Ura, K., Schotta, G., Xie, A., Shah, J. V., & Scully, R. (2012) · PLoS ONE · doi:10.1371/journal.pone.0049211 · Cited by 70 · see citing works
Lorat, Y., Schanz, S., Schuler, N., Wennemuth, G., Rübe, C., & Rübe, C. E. (2012) · PLoS ONE · doi:10.1371/journal.pone.0038165 · Cited by 70 · see citing works
Functional overlaps between XLF and the ATM-dependent DNA double strand break response
Kumar, V., Alt, F. W., & Oksenych, V. (2014) · DNA repair · doi:10.1016/j.dnarep.2014.01.010 · Cited by 69 · see citing works
Sp1 Facilitates DNA Double-Strand Break Repair through a Nontranscriptional Mechanism
Beishline, K., Kelly, C. M., Olofsson, B. A., Koduri, S., Emrich, J., Greenberg, R. A., & Azizkhan‐Clifford, J. (2012) · Molecular and Cellular Biology · doi:10.1128/mcb.00049-12 · Cited by 68 · see citing works
Gapud, E. J., Dorsett, Y., Yin, B., Callén, E., Bredemeyer, A. L., Mahowald, G. K., Omi, K. Q., Walker, L. M., Bednarski, J. J., McKinnon, P. J., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1013295108 · Cited by 68 · see citing works
Self-citationMoon, S.-H., Nguyen, T., Darlington, Y. F., Lu, X., & Donehower, L. A. (2010) · Cell Cycle · doi:10.4161/cc.9.11.11810 · Cited by 66 · see citing works
Histone modifications and the DNA double-strand break response
Van, H. T., & Santos, M. A. (2018) · Cell Cycle · doi:10.1080/15384101.2018.1542899 · Cited by 62 · see citing works
Xie, A., Odate, S., Chandramouly, G., & Scully, R. A. (2010) · Cell Cycle · doi:10.4161/cc.9.17.12884 · Cited by 59 · see citing works
Histone H2A variants: Diversifying chromatin to ensure genome integrity
Oberdoerffer, P., & Miller, K. M. (2022) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2022.03.011 · Cited by 61 · see citing works
Lymphocyte Development: Integration of DNA Damage Response Signaling
Bednarski, J. J., & Sleckman, B. P. (2012) · Advances in immunology · doi:10.1016/b978-0-12-394300-2.00006-5 · Cited by 61 · see citing works
Self-citationMechanisms of DNA damage repair in adult stem cells and implications for cancer formation
Weeden, C. E., & Asselin-Labat, M.-L. (2017) · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · doi:10.1016/j.bbadis.2017.10.015 · Cited by 60 · see citing works
Unique and redundant functions of ATM and DNA-PKcs during V(D)J recombination
Gapud, E. J., & Sleckman, B. P. (2011) · Cell Cycle · doi:10.4161/cc.10.12.16011 · Cited by 54 · see citing works
Self-citationGarvin, A. J., Walker, A. K., Densham, R. M., Chauhan, A. S., Stone, H. R., Mackay, H. L., Jamshad, M., Starowicz, K., Daza-Martín, M., Ronson, G. E., et al. (2019) · Genes & Development · doi:10.1101/gad.321125.118 · Cited by 55 · see citing works
Yin, B., Savic, V., Juntilla, M. M., Bredemeyer, A. L., Yang-Iott, K. S., Helmink, B. A., Koretzky, G. A., Sleckman, B. P., & Bassing, C. H. (2009) · The Journal of Experimental Medicine · doi:10.1084/jem.20091320 · Cited by 53 · see citing works
Self-citationTo spread or not to spread—chromatin modifications in response to DNA damage
Altmeyer, M., & Lukas, J. (2013) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2012.11.001 · Cited by 49 · see citing works
Liu, J., Luo, S., Zhao, H., Liao, J., Li, J., Yang, C., Xu, B., Stern, D. F., Xu, X., & Ye, K. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr1296 · Cited by 49 · see citing works
Rass, E., Chandramouly, G., Zha, S., Alt, F. W., & Xie, A. (2013) · Journal of Biological Chemistry · doi:10.1074/jbc.m112.445825 · Cited by 43 · see citing works
Histone modifications in DNA damage response
Cao, L., Shen, C., & Zhu, W. (2016) · Science China Life Sciences · doi:10.1007/s11427-016-5011-z · Cited by 45 · see citing works
Ray, A., Blevins, C., Wani, G., & Wani, A. A. (2016) · PLOS ONE · doi:10.1371/journal.pone.0159344 · Cited by 44 · see citing works
Steinel, N. C., Lee, B.-S., Tubbs, A., Bednarski, J. J., Schulte, E., Yang-Iott, K. S., Schatz, D. G., Sleckman, B. P., & Bassing, C. H. (2013) · The Journal of Experimental Medicine · doi:10.1084/jem.20121605 · Cited by 43 · see citing works
Self-citationPredicting double-strand DNA breaks using epigenome marks or DNA at kilobase resolution
Mourad, R., Ginalski, K., Legube, G., & Cuvier, O. (2018) · Genome biology · doi:10.1186/s13059-018-1411-7 · Cited by 42 · see citing works
Roles for MDC1 in cancer development and treatment
Ruff, S., Logan, S. K., Garabedian, M. J., & Huang, T. T. (2020) · DNA repair · doi:10.1016/j.dnarep.2020.102948 · Cited by 42 · see citing works
Li, K., Bronk, G., Kondev, J., & Haber, J. E. (2020) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2002126117 · Cited by 42 · see citing works
Domenico, E. G. D., Romano, E., Porto, P. D., & Ascenzioni, F. (2014) · BioMed Research International · doi:10.1155/2014/787404 · Cited by 38 · see citing works
Mahowald, G. K., Baron, J. M., Mahowald, M. A., Kulkarni, S., Bredemeyer, A. L., Bassing, C. H., & Sleckman, B. P. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0902545106 · Cited by 39 · see citing works
Self-citationHistone tails: Directing the chromatin response to DNA damage
Greenberg, R. A. (2011) · FEBS Letters · doi:10.1016/j.febslet.2011.05.037 · Cited by 34 · see citing works
MiRNAs in Radiotherapy Resistance of Nasopharyngeal Carcinoma
Tian, Y., Tang, L., Yi, P., Pan, Q., Han, Y., Shi, Y., Rao, S., Tan, S., Xia, L., Lin, J., et al. (2020) · Journal of Cancer · doi:10.7150/jca.42734 · Cited by 37 · see citing works
DNA Copy Number Control Through Inhibition of Replication Fork Progression
Nordman, J. T., Kozhevnikova, E., Verrijzer, C., Pindyurin, A., Andreyeva, E. N., Shloma, V. V., Zhimulev, I., & Orr-Weaver, T. (2014) · Cell Reports · doi:10.1016/j.celrep.2014.10.005 · Cited by 32 · see citing works
Stone, N. L., England, T. J., & O’Sullivan, S. E. (2021) · Cannabis and Cannabinoid Research · doi:10.1089/can.2020.0159 · Cited by 33 · see citing works
Hartlerode, A. J., Odate, S., Shim, I., Brown, J. M., & Scully, R. (2011) · PLoS ONE · doi:10.1371/journal.pone.0016501 · Cited by 32 · see citing works
Taming Tricky DSBs: ATM on duty
Clouaire, T., Marnef, A., & Legube, G. (2017) · DNA repair · doi:10.1016/j.dnarep.2017.06.010 · Cited by 32 · see citing works
HCoDES Reveals Chromosomal DNA End Structures with Single-Nucleotide Resolution
Dorsett, Y., Zhou, Y., Tubbs, A., Chen, B.-R., Purman, C. E., Lee, B.-S., George, R., Bredemeyer, A. L., Zhao, J., Sodergen, E., et al. (2014) · Molecular Cell · doi:10.1016/j.molcel.2014.10.024 · Cited by 31 · see citing works
Self-citationRegulation of Chromatin Assembly and Cell Transformation by Formaldehyde Exposure in Human Cells
Chen, D., Fang, L., Mei, S., Li, H., Xu, X., Marais, T. L. D., Lü, K., Liu, X. S., & Jin, C. (2017) · Environmental Health Perspectives · doi:10.1289/ehp1275 · Cited by 30 · see citing works
Dujka, M. E., Puebla‐Osorio, N., Tavana, O., Sang, M., & Zhu, C. (2009) · Oncogene · doi:10.1038/onc.2009.394 · Cited by 30 · see citing works
Nickoloff, J. A., Sharma, N., Taylor, L. E., Allen, S. J., & Hromas, R. (2021) · Frontiers in Genetics · doi:10.3389/fgene.2021.748033 · Cited by 29 · see citing works
Papalouka, C., Adamaki, M., Batsaki, P., Zoumpourlis, P., Tsintarakis, A., Goulielmaki, M., Fortis, S. P., Baxevanis, C. N., & Zoumpourlis, V. C. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24032760 · Cited by 29 · see citing works
Inhibiting DNA-PKcs in a non-homologous end-joining pathway in response to DNA double-strand breaks
Dong, J., Zhang, T., Ren, Y., Wang, Z., Ling, C. C., He, F., Li, G. C., Wang, C., & Wen, B. (2017) · Oncotarget · doi:10.18632/oncotarget.15153 · Cited by 29 · see citing works
Feng, Y.-L., Xiang, J.-F., Liu, S., Guo, T., Yan, G.-F., Feng, Y., Kong, N., Li, H. D., Huang, Y. X. R., Lin, H. M., et al. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkx715 · Cited by 26 · see citing works
Fisher, M. R., Rivera-Reyes, A., Bloch, N. B., Schatz, D. G., & Bassing, C. H. (2017) · The Journal of Immunology · doi:10.4049/jimmunol.1601639 · Cited by 28 · see citing works
Self-citationRestoration of ATM Expression in DNA-PKcs–Deficient Cells Inhibits Signal End Joining
Neal, J. A., Xu, Y., Abe, M., Hendrickson, E. A., & Meek, K. (2016) · The Journal of Immunology · doi:10.4049/jimmunol.1501654 · Cited by 27 · see citing works
The nucleosome: orchestrating DNA damage signaling and repair within chromatin
Agarwal, P., & Miller, K. M. (2016) · Biochemistry and Cell Biology · doi:10.1139/bcb-2016-0017 · Cited by 27 · see citing works
A small ubiquitin binding domain inhibits ubiquitin-dependent protein recruitment to DNA repair foci
Helchowski, C. M., Skow, L., Roberts, K. H., Chute, C. L., & Canman, C. E. (2013) · Cell Cycle · doi:10.4161/cc.26640 · Cited by 26 · see citing works
Mounce, B. C., Tsan, F. C., Droit, L., Kohler, S., Reitsma, J. M., Cirillo, L. A., & Tarakanova, V. L. (2011) · Virology · doi:10.1016/j.virol.2011.08.019 · Cited by 26 · see citing works
Barbieri, S., Babini, G., Morini, J., Friedland, W., Buonanno, M., Grilj, V., Brenner, D. J., Ottolenghi, A., & Baiocco, G. (2019) · Scientific Reports · doi:10.1038/s41598-019-50408-5 · Cited by 27 · see citing works
Leem, J., Kim, J., & Oh, J. S. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkad213 · Cited by 25 · see citing works
Giorgio, E. D., Dalla, E., Tolotto, V., D’Este, F., Paluvai, H., Ranzino, L., & Brancolini, C. (2024) · Nucleic Acids Research · doi:10.1093/nar/gkae501 · Cited by 24 · see citing works
Garvin, A. J. (2019) · Biochemical Society Transactions · doi:10.1042/bst20190534 · Cited by 22 · see citing works
DNA Double Strand Break and Response Fluorescent Assays: Choices and Interpretation
Atkinson, J., Bezak, E., Le, H. V., & Kempson, I. M. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25042227 · Cited by 24 · see citing works
Tubbs, A., Dorsett, Y., Chan, E., Helmink, B. A., Lee, B.-S., Hung, P. J., George, R., Bredemeyer, A. L., Mittal, A., Pappu, R. V., et al. (2014) · Molecular and Cellular Biology · doi:10.1128/mcb.00441-14 · Cited by 23 · see citing works
Self-citationSakai, H., Fujigaki, H., Mazur, S. J., & Appella, E. (2014) · Cell Cycle · doi:10.4161/cc.27920 · Cited by 22 · see citing works
Role of Polycomb Group Proteins in the DNA Damage Response – A Reassessment
Chandler, H., Patel, H., Palermo, R. D., Brookes, S., Matthews, N., & Peters, G. G. (2014) · PLoS ONE · doi:10.1371/journal.pone.0102968 · Cited by 22 · see citing works
Defective DNA damage response and repair in liver cells expressing hepatitis B virus surface antigen
Chung, Y. (2013) · The FASEB Journal · doi:10.1096/fj.12-226639 · Cited by 21 · see citing works
Schmalz, M. F., Liang, X., Wieser, I., Gruschel, C., Muskalla, L., Stöckl, M. T., Nitschke, R., Linz, N., Leitenstorfer, A., Vogel, A., et al. (2023) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2220132120 · Cited by 20 · see citing works
Integrated signaling in developing lymphocytes
Bednarski, J. J., & Sleckman, B. P. (2012) · Cell Cycle · doi:10.4161/cc.22021 · Cited by 20 · see citing works
Self-citationPTEN enhances G2/M arrest in etoposide-treated MCF-7 cells through activation of the ATM pathway
ZHANG, R., Zhu, L., Zhang, L., Xu, A., Li, Z., Xu, Y., He, P. T., Wu, M., Wei, F., & WANG, C. (2016) · Oncology Reports · doi:10.3892/or.2016.4674 · Cited by 20 · see citing works
Retracted
- Authors
- Savic, V., Yin, B., Maas, N. L., Bredemeyer, A. L., Carpenter, A. C., Helmink, B. A., Yang-Iott, K. S., Sleckman, B. P., & Bassing, C. H.
- Affiliations
- Children's Hospital of Philadelphia (US)
- Washington University in St. Louis (US)
- Corresponding author
- Bassing, Craig H.
- Venue
- Molecular Cell
- Publisher
- Elsevier BV
- Published
- 2009-05
- Volume
- 34
- Issue
- 3
- Pages
- 298-310
- ISSN
- 1097-2765 (ISSN-L)
- PMC
- PMC2744111
- OpenAlex
- W2036749550
- Cited by
- 204
- References
- 48
- Citations by year
- 2026: 1 · 2025: 7 · 2024: 14 · 2023: 9 · 2022: 11 · 2021: 12 · 2020: 14 · 2019: 12 · 2018: 7 · 2017: 12 · 2016: 9 · 2015: 9 · 2014: 12 · 2013: 22 · 2012: 15
- FWCI
- 7.12
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- www.elsevier.com/tdm/userlicense/1.0/ (tdm)
- www.elsevier.com/legal/tdmrep-license (tdm)
- www.elsevier.com/open-access/userlicense/1.0/ (vor, 1574 d)
- doi.org/10.15223/policy-017 (stm-asf)
- doi.org/10.15223/policy-037 (stm-asf)
- doi.org/10.15223/policy-012 (stm-asf)
- doi.org/10.15223/policy-029 (stm-asf)
- doi.org/10.15223/policy-004 (stm-asf)
- Locations
- Molecular Cell (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Figshare (submittedVersion)
- Funders
- National Cancer Institute (R01CA125195)
- National Institute of Allergy and Infectious Diseases (R01AI074953, T32AI055428)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › Effects of Radiation Exposure
- Keywords
- γH2AX, DNA double-strand breaks, ATM, MDC1, DNA-PKcs, H2AX phosphorylation, DNA repair, G1 phase, chromatin
- MeSH terms
- Animals, B-Lymphocytes, Chromatin, DNA, DNA Damage, DNA-Binding Proteins, Endonucleases, Histones, Nuclear Proteins, Recombination, Genetic, Thymus Gland, Tumor Suppressor Protein p53, G1 Phase, Protein Serine-Threonine Kinases, Mice, Knockout, Cell Cycle Proteins, Genes, T-Cell Receptor alpha, Tumor Suppressor Proteins, Intracellular Signaling Peptides and Proteins, Adaptor Proteins, Signal Transducing, Mice, Ataxia Telangiectasia Mutated Proteins
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review