PHD3 Loss in Cancer Enables Metabolic Reliance on Fatty Acid Oxidation via Deactivation of ACC2
Open accessAbstract
While much research has examined the use of glucose and glutamine by tumor cells, many cancers instead prefer to metabolize fats. Despite the pervasiveness of this phenotype, knowledge of pathways that drive fatty acid oxidation (FAO) in cancer is limited. Prolyl hydroxylase domain proteins hydroxylate substrate proline residues and have been linked to fuel switching. Here, we reveal that PHD3 rapidly triggers repression of FAO in response to nutrient abundance via hydroxylation of acetyl-coA carboxylase 2 (ACC2). We find that PHD3 expression is strongly decreased in subsets of cancer including acute myeloid leukemia (AML) and is linked to a reliance on fat catabolism regardless of external nutrient cues. Overexpressing PHD3 limits FAO via regulation of ACC2 and consequently impedes leukemia cell proliferation. Thus, loss of PHD3 enables greater utilization of fatty acids but may also serve as a metabolic and therapeutic liability by indicating cancer cell susceptibility to FAO inhibition.
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PHD3 is suppressed in cancers that rely on FAO, such as AML and prostate cancer, and elevated in cancers that rely on FAS such as breast and non-small-lung-cell cancer.
“PHD3 is suppressed in cancers that rely on FAO, such as AML and prostate cancer, and elevated in cancers that rely on FAS such as breast and non-small-lung-cell cancer.55–57”
From The multifaceted contributions of mitochondria to cellular metabolism (2018) · cites this paper as [55]
ACC2 is hydroxylated by PHD3, and hydroxylation promotes ACC2 activity in nutrient abundance.
“ACC2 is also hydroxylated by the dioxygenase prolyl hydroxylase 3 (PHD3).55 Hydroxylation promotes ACC2 activity in nutrient abundance.”
From The multifaceted contributions of mitochondria to cellular metabolism (2018) · cites this paper as [55]
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Cites
Oxygen sensing by metazoans: the central role of the HIF hydroxylase pathway.
Kaelin, W. G., & Ratcliffe, P. J. (2008) · Molecular Cell · doi:10.1016/j.molcel.2008.04.009 · Cited by 3,251 · see citing works
Self-citationAerobic glycolysis: Meeting the metabolic requirements of cell proliferation
Lunt, S. Y., & Vander Heiden, M. G. (2011) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-092910-154237 · Cited by 3,057 · see citing works
A conserved family of prolyl-4-hydroxylases that modify HIF
Bruick, R. K., & McKnight, S. L. (2001) · Science · doi:10.1126/science.1066373 · Cited by 2,549 · see citing works
Shultz, L. D., Lyons, B. L., Burzenski, L. M., Gott, B., Chen, X., Chaleff, S., Kotb, M., Gillies, S. D., King, M., Mangada, J., et al. (2005) · The Journal of Immunology · doi:10.4049/jimmunol.174.10.6477 · Cited by 1,736 · see citing works
Pyruvate Kinase M2 Is a PHD3-Stimulated Coactivator for Hypoxia-Inducible Factor 1
Luo, W., Hu, H., Chang, R., Zhong, J., Knabel, M., O'Meally, R., Cole, R. N., Pandey, A., & Semenza, G. L. (2011) · Cell · doi:10.1016/j.cell.2011.03.054 · Cited by 1,463 · see citing works
Prognostically Useful Gene-Expression Profiles in Acute Myeloid Leukemia
Valk, P. J. M., Verhaak, R. G. W., Beijen, M. A., Erpelinck, C. A. J., van Doorn-Khosrovani, S. B. V. W., Boer, J. M., Beverloo, H. B., Moorhouse, M. J., van der Spek, P. J., Löwenberg, B., et al. (2004) · New England Journal of Medicine · doi:10.1056/nejmoa040465 · Cited by 1,370 · see citing works
Cancer metabolism: fatty acid oxidation in the limelight
Carracedo, A., Cantley, L. C., & Pandolfi, P. P. (2013) · Nature reviews. Cancer · doi:10.1038/nrc3483 · Cited by 1,316 · see citing works
Self-citationMetabolic control of muscle mitochondrial function and fatty acid oxidation through SIRT1/PGC‐1α
Gerhart‐Hines, Z., Rodgers, J. T., Bare, O., Lerin, C., Kim, S., Mostoslavsky, R., Alt, F. W., Wu, Z., & Puigserver, P. (2007) · The EMBO Journal · doi:10.1038/sj.emboj.7601633 · Cited by 1,294 · see citing works
AMPK regulates NADPH homeostasis to promote tumour cell survival during energy stress
Jeon, S.-M., Chandel, N. S., & Hay, N. (2012) · Nature · doi:10.1038/nature11066 · Cited by 1,132 · see citing works
Antioxidant and oncogene rescue of metabolic defects caused by loss of matrix attachment
Schafer, Z. T., Grassian, A. R., Song, L., Jiang, Z., Gerhart-Hines, Z., Irie, H. Y., Gao, S., Puigserver, P., & Brugge, J. S. (2009) · Nature · doi:10.1038/nature08268 · Cited by 1,031 · see citing works
Fullerton, M. D., Galic, S., Marcinko, K., Sikkema, S., Pulinilkunnil, T., Chen, Z.-P., O'Neill, H. M., Ford, R. J., Palanivel, R., O'Brien, M., et al. (2013) · Nature Medicine · doi:10.1038/nm.3372 · Cited by 893 · see citing works
Negative regulation of hypoxia-inducible genes by the von Hippel-Lindau protein.
Iliopoulos, O., Levy, A. P., Jiang, C., Kaelin, W. G., & Goldberg, M. A. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.20.10595 · Cited by 882 · see citing works
Self-citationSIRT3 Opposes Reprogramming of Cancer Cell Metabolism through HIF1α Destabilization
Finley, L. W. S., Carracedo, A., Lee, J., Souza, A., Egia, A., Zhang, J., Teruya-Feldstein, J., Moreira, P. I., Cardoso, S. M., Clish, C. B., et al. (2011) · Cancer Cell · doi:10.1016/j.ccr.2011.02.014 · Cited by 782 · see citing works
Self-citationA PML–PPAR-δ pathway for fatty acid oxidation regulates hematopoietic stem cell maintenance
Ito, K., Carracedo, A., Weiss, D., Arai, F., Ala, U., Avigan, D., Schafer, Z. T., Evans, R. M., Suda, T., Lee, C., et al. (2012) · Nature Medicine · doi:10.1038/nm.2882 · Cited by 731 · see citing works
Self-citationSamudio, I. J., Harmancey, R., Fiegl, M., Kantarjian, H. M., Konopleva, M. Y., Korchin, B., Kaluarachchi, K. K., Bornmann, W. G., Duvvuri, S. R., Taegtmeyer, H., et al. (2009) · Journal of Clinical Investigation · doi:10.1172/jci38942 · Cited by 710 · see citing works
Fatty acid carbon is essential for dNTP synthesis in endothelial cells
Schoors, S., Bruning, U., Missiaen, R., Queiroz, K. C. S., Borgers, G., Elia, I., Zecchin, A., Cantelmo, A. R., Christen, S., Goveia, J., et al. (2015) · Nature · doi:10.1038/nature14362 · Cited by 646 · see citing works
Gorres, K. L., & Raines, R. T. (2010) · Critical Reviews in Biochemistry and Molecular Biology · doi:10.3109/10409231003627991 · Cited by 611 · see citing works
Yoon, M. J., Lee, G. Y., Chung, J.-J., Ahn, Y. H., Hong, S. H., & Kim, J. B. (2006) · Diabetes · doi:10.2337/db05-1322 · Cited by 546 · see citing works
Inhibition of Hypoxia-inducible Factor (HIF) Hydroxylases by Citric Acid Cycle Intermediates
Koivunen, P., Hirsilä, M., Remes, A. M., Hassinen, I. E., Kivirikko, K. I., & Myllyharju, J. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m610415200 · Cited by 521 · see citing works
Zaugg, K., Yao, Y., Reilly, P. T., Kannan, K., Kiarash, R., Mason, J. M., Huang, P., Sawyer, S. K., Fuerth, B. J., Faubert, B., et al. (2011) · Genes & Development · doi:10.1101/gad.1987211 · Cited by 493 · see citing works
AMP kinase and malonyl-CoA: targets for therapy of the metabolic syndrome
Ruderman, N., & Prentki, M. (2004) · Nature Reviews Drug Discovery · doi:10.1038/nrd1344 · Cited by 451 · see citing works
Regulation of acetyl-CoA carboxylase
Brownsey, R. W., Boone, A. N., Elliott, J. E., Kulpa, J. E., & Lee, W. M. (2006) · Biochemical Society Transactions · doi:10.1042/bst20060223 · Cited by 429 · see citing works
Laurent, G., German, N. J., Saha, A. K., de Boer, V. C. J., Davies, M. N., Koves, T. R., Dephoure, N., Fischer, F. F., Boanca, G., Vaitheesvaran, B., et al. (2013) · Molecular Cell · doi:10.1016/j.molcel.2013.05.012 · Cited by 394 · see citing works
Self-citationAbu-Elheiga, L., Oh, W., Kordari, P., & Wakil, S. J. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1733877100 · Cited by 389 · see citing works
MacKenzie, E. D., Selak, M. A., Tennant, D. A., Payne, L. J., Crosby, S., Frederiksen, C. M., Watson, D. G., & Gottlieb, E. (2007) · Molecular and Cellular Biology · doi:10.1128/mcb.01927-06 · Cited by 359 · see citing works
Masson, N., & Ratcliffe, P. J. (2014) · Cancer & Metabolism · doi:10.1186/2049-3002-2-3 · Cited by 296 · see citing works
Wood, S. M., Gleadle, J., Pugh, C. W., Hankinson, O., & Ratcliffe, P. J. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.25.15117 · Cited by 289 · see citing works
Holubarsch, C., Rohrbach, M., Karrasch, M., Boehm, E., Poloński, L., Ponikowski, P. P., & Rhein, S. (2007) · Clinical Science · doi:10.1042/cs20060307 · Cited by 289 · see citing works
Loenarz, C., & Schofield, C. J. (2011) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2010.07.002 · Cited by 274 · see citing works
Human Acetyl-CoA Carboxylase 2
Abu-Elheiga, L. A., Almarza-Ortega, D. B., Baldini, A., & Wakil, S. J. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.16.10669 · Cited by 221 · see citing works
Lipid-mediated regulation of SKN-1/Nrf in response to germ cell absence
Steinbaugh, M. J., Narasimhan, S. D., Robida-Stubbs, S., Mazzeo, L. E. M., Dreyfuss, J. M., Hourihan, J. M., Raghavan, P., Operaña, T. N., Esmaillie, R., & Blackwell, T. K. (2015) · eLife · doi:10.7554/elife.07836 · Cited by 213 · see citing works
Long, N. M., & Smith, C. S. (2011) · Insights into Imaging · doi:10.1007/s13244-010-0062-3 · Cited by 205 · see citing works
Andersson, A., Ritz, C., Lindgren, D., Edén, P., Lassen, C., Heldrup, J., Olofsson, T., Råde, J., Fontes, M., Porwit‐MacDonald, A., et al. (2007) · Leukemia · doi:10.1038/sj.leu.2404688 · Cited by 189 · see citing works
Liu, Y., Zuckier, L. S., & Ghesani, N. V. (2010) · PubMed · Cited by 183 · see citing works
Targeting Mitochondria with Avocatin B Induces Selective Leukemia Cell Death
Lee, E. A., Angka, L., Rota, S.-G., Hanlon, T., Mitchell, A. S., Hurren, R., Wang, X. M., Gronda, M., Boyacı, E., Bojko, B., et al. (2015) · Cancer Research · doi:10.1158/0008-5472.can-14-2676 · Cited by 179 · see citing works
Ratnappan, R., Amrit, F. R. G., Chen, S.-W., Gill, H. K., Holden, K., Ward, J. D., Yamamoto, K. R., Olsen, C. P., & Ghazi, A. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004829 · Cited by 143 · see citing works
Post-translational modifications and the Warburg effect
Hitosugi, T., & Chen, J. (2013) · Oncogene · doi:10.1038/onc.2013.406 · Cited by 139 · see citing works
HIF-independent role of prolyl hydroxylases in the cellular response to amino acids
Durán, R. V., MacKenzie, E. D., Boulahbel, H., Frezza, C., Heiserich, L., Tardito, S., Bussolati, O., Rocha, S., Hall, M. N., & Gottlieb, E. (2013) · Oncogene · doi:10.1038/onc.2012.465 · Cited by 139 · see citing works
Movement of the Biotin Carboxylase B-domain as a Result of ATP Binding
Thoden, J. B., Blanchard, C. Z., Holden, H. M., et al. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.275.21.16183 · Cited by 125 · see citing works
Ranolazine for chronic stable angina
Nash, D. T., & Nash, S. D. (2008) · The Lancet · doi:10.1016/s0140-6736(08)61554-8 · Cited by 94 · see citing works
Sirtuins and the Metabolic Hurdles in Cancer
German, N. J., & Haigis, M. C. (2015) · Current Biology · doi:10.1016/j.cub.2015.05.012 · Cited by 84 · see citing works
Self-citationAdrenergic Regulation of AMP-activated Protein Kinase in Brown Adipose Tissue in Vivo
Pulinilkunnil, T., He, H., Kong, D., Asakura, K., Peroni, O. D., Lee, A. D., & Kahn, B. B. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.218719 · Cited by 84 · see citing works
HIF prolyl hydroxylase-3 mediates alpha-ketoglutarate-induced apoptosis and tumor suppression
Tennant, D. A., & Gottlieb, E. (2010) · Journal of Molecular Medicine · doi:10.1007/s00109-010-0627-0 · Cited by 83 · see citing works
Molecular mechanism for the regulation of human ACC2 through phosphorylation by AMPK
Cho, Y. S., Lee, J. I., Shin, D., et al. (2009) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2009.11.029 · Cited by 79 · see citing works
Amrit, F. R. G., Steenkiste, E. M., Ratnappan, R., Chen, S.-W., McClendon, T. B., Kostka, D., Yanowitz, J. L., Olsen, C. P., & Ghazi, A. (2016) · PLoS Genetics · doi:10.1371/journal.pgen.1005788 · Cited by 78 · see citing works
Rodríguez‐Enríquez, S., Hernández‐Esquivel, L., Marín‐Hernández, Á., Hafidi, M. E., Gallardo‐Pérez, J. C., Hernández‐Reséndiz, I., Rodríguez‐Zavala, J. S., Pacheco-Velázquez, S. C., & Moreno‐Sánchez, R. (2015) · The International Journal of Biochemistry & Cell Biology · doi:10.1016/j.biocel.2015.06.010 · Cited by 66 · see citing works
Prolyl Hydroxylase PHD3 Activates Oxygen-dependent Protein Aggregation
Rantanen, K., Pursiheimo, J., Högel, H., Himanen, V., Metzen, E., & Jaakkola, P. (2008) · Molecular Biology of the Cell · doi:10.1091/mbc.e07-11-1124 · Cited by 60 · see citing works
Heřmanová, I., Arruabarrena-Aristorena, A., Vališ, K., Nůsková, H., Alberich-Jordà, M., Fišer, K., Fernández‐Ruiz, S., Kavan, D., Pecinová, A., Niso‐Santano, M., et al. (2015) · Leukemia · doi:10.1038/leu.2015.213 · Cited by 51 · see citing works
Rawłuszko-Wieczorek, A. A., Bujnicka, K. E., Horbacka, K., Krokowicz, P., & Jagodziński, P. P. (2013) · BMC Cancer · doi:10.1186/1471-2407-13-526 · Cited by 44 · see citing works
Coupling of Mitochondrial Fatty Acid Uptake to Oxidative Flux in the Intact Heart
O’Donnell, J. M., Alpert, N. M., White, L. T., & Lewandowski, E. D. (2002) · Biophysical Journal · doi:10.1016/s0006-3495(02)75369-1 · Cited by 43 · see citing works
Estañ, M. C., Calviño, E., Calvo, S., Guillén‐Guío, B., Boyano-Adánez, M. D. C., de Blas, E., Rial, E., & Aller, P. (2014) · PLoS ONE · doi:10.1371/journal.pone.0115250 · Cited by 42 · see citing works
S6K1 determines the metabolic requirements for BCR-ABL survival
Barger, J. F., Gallo, C. A., Tandon, P., Liu, H., Sullivan, A. P., Grimes, H. L., & Plas, D. R. (2012) · Oncogene · doi:10.1038/onc.2012.70 · Cited by 37 · see citing works
The detection rates and tumor clinical/pathological stages of whole-body FDG-PET cancer screening
Ono, K., Ochiai, R., Yoshida, T., et al. (2007) · Annals of Nuclear Medicine · doi:10.1007/bf03034001 · Cited by 34 · see citing works
Madden, M. C., Wolkowicz, P. E., Pohost, G. M., et al. (1995) · American Journal of Physiology-Heart and Circulatory Physiology · doi:10.1152/ajpheart.1995.268.6.h2505 · Cited by 26 · see citing works
Noordermeer, S. M., Monteferrario, D., Sanders, M. A., Bullinger, L., Jansen, J. H., & van der Reijden, B. A. (2012) · Blood · doi:10.1182/blood-2012-02-405019 · Cited by 14 · see citing works
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“Myc-overexpressing TNBC shows upregulated CPT activity and increased bioenergetic reliance on FAO through targeted metabolomics analysis 74 .”
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Cai, X., Yuan, Y., Liao, Z., Xing, K., Zhu, C., Xu, Y., Yu, L., Wang, L., Wang, S., Zhu, X., et al. (2018) · The FASEB Journal · doi:10.1096/fj.201700670r · Cited by 65 · see citing works
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- Authors
- German, N. J., Yoon, H., Yusuf, R. Z., Murphy, J. P., Finley, L. W. S., Laurent, G., Haas, W., Satterstrom, F. K., Guarnerio, J., Zaganjor, E., Santos, D., Pandolfi, P. P., Beck, A. H., Gygi, S. P., Scadden, D. T., Kaelin, W. G., & Haigis, M. C.
- Affiliations
- Harvard University (US)
- Beth Israel Deaconess Medical Center (US)
- Howard Hughes Medical Institute (US)
- Corresponding author
- Haigis, Marcia C.
- ORCID
- Venue
- Molecular Cell
- Publisher
- Elsevier BV
- Published
- 2016-09
- Volume
- 63
- Issue
- 6
- Pages
- 1006-1020
- ISSN
- 1097-2765 (ISSN-L)
- PMC
- PMC5040345
- OpenAlex
- W2519842257
- Cited by
- 156
- References
- 55
- Citations by year
- 2026: 8 · 2025: 13 · 2024: 11 · 2023: 23 · 2022: 17 · 2021: 16 · 2020: 25 · 2019: 13 · 2018: 16 · 2017: 11 · 2016: 2
- FWCI
- 5.83
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Molecular Cell (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- IslandScholar (University of Prince Edward Island) (submittedVersion)
- Scholarworks@UNIST (Ulsan National Institute of Science and Technology) (submittedVersion)
- Funders
- Howard Hughes Medical Institute
- National Cancer Institute (R35CA210068)
- National Institute of General Medical Sciences (T32GM007306)
- National Institute of Diabetes and Digestive and Kidney Diseases (R01DK103295, P60DK020541, T32DK007260)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Cancer, Lipids, and Metabolism
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Cancer, Hypoxia, and Metabolism
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Metabolism, Diabetes, and Cancer
- Keywords
- PHD3, fatty acid oxidation, acetyl-CoA carboxylase 2, proline hydroxylation, cancer metabolism, acute myeloid leukemia, fuel switching, tumor cell proliferation, metabolic vulnerability
- MeSH terms
- Acetyl-CoA Carboxylase, Amino Acid Sequence, Animals, Fatty Acids, Humans, Hydroxylation, Male, Models, Molecular, Neoplasm Transplantation, Oxidation-Reduction, Proline, Signal Transduction, Leukemia, Myeloid, Acute, Gene Expression Regulation, Neoplastic, Survival Analysis, Mice, Inbred NOD, K562 Cells, RNA, Small Interfering, Structural Homology, Protein, Cell Line, Tumor, Mice, Metabolic Networks and Pathways, HEK293 Cells, Hypoxia-Inducible Factor-Proline Dioxygenases
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