The DOI matches its Crossref record; 20 of the 20 references it cites were found in a registry or an index.
The secret lives of experiments: Methods reporting in the fMRI literature
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
von Elm, E., Altman, D. G., Egger, M., Pocock, S. J., Gøtzsche, P. C., Vandenbroucke, J. P., & Initiative, F. T. S. (2007) · PLoS Medicine · doi:10.1371/journal.pmed.0040296 · Cited by 23,020
Why Most Published Research Findings Are False
Ioannidis, J. P. A. (2005) · PLoS Medicine · doi:10.1371/journal.pmed.0020124 · Cited by 10,505
Moher, D., Schulz, K. F., & Altman, D. G. (2001) · The Lancet · doi:10.1016/s0140-6736(00)04337-3 · Cited by 5,373
Why Most Published Research Findings Are False
Ioannidis, J. P. A. (2005) · CHANCE · doi:10.1080/09332480.2005.10722754 · Cited by 4,702 · cited 7×
“Further, analysis strategies vary widely across studies, suggesting the potential for bias (Ioannidis, 2005b).”
InfluentialTowards complete and accurate reporting of studies of diagnostic accuracy: the STARD initiative
Bossuyt, P. M., Reitsma, J. B., Bruns, D. E., Gatsonis, C. A., Glasziou, P. P., Irwig, L. M., Lijmer, J. G., Moher, D., Rennie, D., & de Vet, H. C. W. (2003) · BMJ · doi:10.1136/bmj.326.7379.41 · Cited by 3,215
Towards Complete and Accurate Reporting of Studies of Diagnostic Accuracy: The STARD Initiative
Bossuyt, P. M., Reitsma, J. B., Bruns, D. E., Gatsonis, C. A., Glasziou, P. P., Irwig, L. M., Lijmer, J. G., Moher, D., Rennie, D., & de Vet, H. C. W. (2003) · Radiology · doi:10.1148/radiol.2261021292 · Cited by 3,215
Moher, D. (2001) · JAMA · doi:10.1001/jama.285.15.1987 · Cited by 2,545
Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration
Klein, A., Andersson, J., Ardekani, B. A., Ashburner, J., Avants, B., Chiang, M.-C., Christensen, G. E., Collins, D. L., Gee, J., Hellier, P., et al. (2009) · NeuroImage · doi:10.1016/j.neuroimage.2008.12.037 · Cited by 2,227
Chan, A.-W., Hróbjartsson, A., Haahr, M. T., Gøtzsche, P. C., & Altman, D. G. (2004) · JAMA · doi:10.1001/jama.291.20.2457 · Cited by 1,845
The case of the misleading funnel plot
Lau, J., Ioannidis, J. P. A., Terrin, N., Schmid, C. H., & Olkin, I. (2006) · BMJ · doi:10.1136/bmj.333.7568.597 · Cited by 1,766
Research works printed but not linked: 27
- Bennett, 2009, The principled control of false positives in neuroimaging, Soc. Cogn. Affect. Neurosci., 4, 417, 10.1093/scan/nsp053 · DOI · Paper page
- Brown, 2007, Risk prediction and aversion by anterior cingulate cortex, Cogn. Affect. Behav. Neurosci., 7, 266, 10.3758/CABN.7.4.266 · DOI · Paper page
- Bullmore, 1999, Methods for diagnosis and treatment of stimulus-correlated motion in generic brain activation studies using fMRI, Hum. Brain Mapp., 7, 38, 10.1002/(SICI)1097-0193(1999)7:1<38::AID-HBM4>3.0.CO;2-Q · DOI · Paper page
- Carp, 2011, Optimizing the order of operations for movement scrubbing: comment on Power et al., NeuroImage
- Chan, 2005, Epidemiology and reporting of randomised trials published in PubMed journals, Lancet, 365, 1159, 10.1016/S0140-6736(05)71879-1 · DOI · Paper page
- Churchill, 2012, Optimizing preprocessing and analysis pipelines for single-subject fMRI. I. Standard temporal motion and physiological noise correction methods, Hum. Brain Mapp., 33, 609, 10.1002/hbm.21238 · DOI
- Churchill, 2012, Optimizing preprocessing and analysis pipelines for single-subject fMRI: 2. Interactions with ICA, PCA, task contrast and inter-subject heterogeneity, PLoS One, 7, 10.1371/journal.pone.0031147 · DOI
- Dale, 1999, Optimal experimental design for event-related fMRI, Hum. Brain Mapp., 8, 109, 10.1002/(SICI)1097-0193(1999)8:2/3<109::AID-HBM7>3.0.CO;2-W · doi:10.1002/(sici)1097-0193(1999)8:2/3<109::aid-hbm7>3.0.co;2-w
- Della-Maggiore, 2002, An empirical comparison of SPM preprocessing parameters to the analysis of fMRI data, NeuroImage, 17, 19, 10.1006/nimg.2002.1113 · DOI
- Egger, 1997, Bias in meta-analysis detected by a simple, graphical test, Br. Med. J., 315, 629, 10.1136/bmj.315.7109.629 · DOI · Paper page
- Friston, 1996, Movement-related effects in fMRI time-series, Magn. Reson. Med., 35, 346, 10.1002/mrm.1910350312 · DOI · Paper page
- Gronenschild, 2012, The effects of FreeSurfer version, workstation type, and Macintosh operating system version on anatomical volume and cortical thickness measurements, PLoS One, 7, 10.1371/journal.pone.0038234 · DOI · Paper page
- Hayasaka, 2007, Power and sample size calculation for neuroimaging studies by non-central random field theory, NeuroImage, 37, 721, 10.1016/j.neuroimage.2007.06.009 · DOI
- Henson, 1999, The slice-timing problem in event-related fMRI, NeuroImage, 9, 125
- Hopfinger, 2000, A study of analysis parameters that influence the sensitivity of event-related fMRI analyses, NeuroImage, 11, 326, 10.1006/nimg.2000.0549 · DOI
- Ince, 2012, The case for open computer programs, Nature, 482, 485, 10.1038/nature10836 · DOI · Paper page
- Ioannidis, 2005, Contradicted and initially stronger effects in highly cited clinical research, J. Am. Med. Assoc., 294, 218, 10.1001/jama.294.2.218 · DOI · Paper page
- Lund, 2005, Motion or activity: their role in intra- and inter-subject variation in fMRI, NeuroImage, 26, 960, 10.1016/j.neuroimage.2005.02.021 · DOI · Paper page
- Mathieu, 2009, Comparison of registered and published primary outcomes in randomized controlled trials, J. Am. Med. Assoc., 302, 977, 10.1001/jama.2009.1242 · DOI · Paper page
- Moher, 2010, Guidance for developers of health research reporting guidelines, PLoS Med., 7, e1000217, 10.1371/journal.pmed.1000217 · DOI · Paper page
- Nieuwenhuis, 2007, Error-likelihood prediction in the medial frontal cortex: a critical evaluation, Cereb. Cortex, 17, 1570, 10.1093/cercor/bhl068 · DOI
- Poldrack, 2012, The future of fMRI in cognitive neuroscience, NeuroImage, 2, 1216, 10.1016/j.neuroimage.2011.08.007 · DOI · Paper page
- Poline, 2006, Motivation and synthesis of the FIAC experiment: reproducibility of fMRI results across expert analyses, Hum. Brain Mapp., 27, 351, 10.1002/hbm.20268 · DOI
- Skudlarski, 1999, ROC analysis of statistical methods used in functional MRI: individual subjects, NeuroImage, 9, 311, 10.1006/nimg.1999.0402 · DOI · Paper page
- Sladky, 2011, Slice-timing effects and their correction in functional MRI, NeuroImage, 58, 588, 10.1016/j.neuroimage.2011.06.078 · DOI · Paper page
- Tzourio-Mazoyer, 2002, Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain, NeuroImage, 15, 273, 10.1006/nimg.2001.0978 · DOI · Paper page
- Zhang, 2009, Evaluation and optimization of fMRI single-subject processing pipelines with NPAIRS and second-level CVA, Magn. Reson. Imaging, 27, 264, 10.1016/j.mri.2008.05.021 · DOI
Cited by
Power failure: why small sample size undermines the reliability of neuroscience
Button, K. S., Ioannidis, J. P. A., Mokrysz, C., Nosek, B. A., Flint, J., Robinson, E. S. J., & Munafò, M. R. (2013) · Nature Reviews Neuroscience · doi:10.1038/nrn3475 · Cited by 7,641
fMRIPrep: A robust preprocessing pipeline for functional MRI
Esteban, O., Markiewicz, C. J., Blair, R. W., Moodie, C. A., Isik, A. I., Erramuzpe, A., Kent, J. D., Goncalves, M., DuPre, E., Snyder, M., et al. (2019) · Nature Methods · doi:10.1038/s41592-018-0235-4 · Cited by 3,905
Cluster failure: why fMRI inferences for spatial extent have inflated false-positive rates
Eklund, A., Nichols, T. E., & Knutsson, H. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1602413113 · Cited by 3,487
A manifesto for reproducible science
Munafò, M. R., Nosek, B. A., Bishop, D. V. M., Button, K. S., Chambers, C. D., Percie du Sert, N., Simonsohn, U., Wagenmakers, E.-J., Ware, J. J., & Ioannidis, J. P. A. (2017) · Nature Human Behaviour · doi:10.1038/s41562-016-0021 · Cited by 3,397
Cognitive Reappraisal of Emotion: A Meta-Analysis of Human Neuroimaging Studies
Buhle, J. T., Silvers, J. A., Wager, T. D., Lopez, R., Onyemekwu, C., Kober, H., Weber, J., & Ochsner, K. N. (2014) · Cerebral Cortex · doi:10.1093/cercor/bht154 · Cited by 1,896
Metadata
- Authors
- Carp, J.
- Venue
- NeuroImage
- Publisher
- Elsevier BV
- Published
- 2012-10
- Volume
- 63
- Issue
- 1
- Pages
- 289-300
- ISSN
- 1053-8119 (ISSN-L)
- OpenAlex
- W2053239079
- Cited by
- 457
- References
- 20
- FWCI
- 25.12
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.elsevier.com/tdm/userlicense/1.0/ (tdm)
- Funders
- Department of Defense
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: The secret lives of experiments: Methods reporting in the fMRI literature. https://app.cochat.ai/papers/10.1016/j.neuroimage.2012.07.004
- The paper
- Carp, J. (2012). The secret lives of experiments: Methods reporting in the fMRI literature. NeuroImage. https://doi.org/10.1016/j.neuroimage.2012.07.004
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.