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A short-chain dehydrogenase/reductase (SDR) detection for the Isoflavone reductase gene in Bulbophyllum and other orchids

Bhinija, Kisana, Huehne, Pattana Srifah, Mongkolsuk, Skorn, Sitthimonchai, Somkid, Satayavivad, Jutamaad·2022·South African Journal of Botany
DOI 10.1016/j.sajb.2021.08.034
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Fig. 1 Analysis of phytochemical content in Bulbophyllum species . (A) Estimation of the content of fl avonoids and total polyphenols, and (B) the DPPH and the superoxide radical scavenging activity of ethanolic extracts from ascorbic acid, Bulbophyllum blepharistes (BB), B. morphologlorum (BM), B. orientale (BO), B. vaginatum (BV), and Dendrobium hybrid (DE), and 250 m Mascorbic acid (a positive control). The paired-samples t-test was used to identify signi fi cant differences between Dendrobium hybrid and the other samples. p value s of  0.05 (*),  0.01 (**), and  0.001 (***) were considered statistically signi fi cant.
Fig. 1 Analysis of phytochemical content in Bulbophyllum species . (A) Estimation of the content of fl avonoids and total polyphenols, and (B) the DPPH and the superoxide radical scavenging activity of ethanolic extracts from ascorbic acid, Bulbophyllum blepharistes (BB), B. morphologlorum (BM), B. orientale (BO), B. vaginatum (BV), and Dendrobium hybrid (DE), and 250 m Mascorbic acid (a positive control). The paired-samples t-test was used to identify signi fi cant differences between Dendrobium hybrid and the other samples. p value s of  0.05 (*),  0.01 (**), and  0.001 (***) were considered statistically signi fi cant.CC-BY · From the PDF
Fig. 2 Alignment of a segment of the SDR amino acid sequences (A) and nucleotide sequences (B) of orchids ( Dendrobium -IFR , Paphiopedilum -IFR, and Vanda -EGS), legume ( PhaseolusPCBER), and palm ( PhoenixIFR). The location of sequences for primer designs are indicated by square boxes.
Fig. 2 Alignment of a segment of the SDR amino acid sequences (A) and nucleotide sequences (B) of orchids ( Dendrobium -IFR , Paphiopedilum -IFR, and Vanda -EGS), legume ( PhaseolusPCBER), and palm ( PhoenixIFR). The location of sequences for primer designs are indicated by square boxes.CC-BY · From the PDF
Fig. 3 The relative expression of genes related to stress responses (A) and defense mechanisms (B) in the leaf and pseudobulb tissues of B. blepharistes (BB), B. morphologlorum (BM), B. orientale (BO), B. vaginatum (BV), Dendrobium hybrid (DE), D. bellatulum (DB), D. crystallinum (DC), and Vanda tessellata (VT) compared to that of target genes in the pseudobulb tissue of a DE control. The target gene expression level in each sample is expressed relative to the expression level of the internal control, 5.8S rRNA .
Fig. 3 The relative expression of genes related to stress responses (A) and defense mechanisms (B) in the leaf and pseudobulb tissues of B. blepharistes (BB), B. morphologlorum (BM), B. orientale (BO), B. vaginatum (BV), Dendrobium hybrid (DE), D. bellatulum (DB), D. crystallinum (DC), and Vanda tessellata (VT) compared to that of target genes in the pseudobulb tissue of a DE control. The target gene expression level in each sample is expressed relative to the expression level of the internal control, 5.8S rRNA .CC-BY · From the PDF
Fig. 4 Neighbor-joining phylogenetic relationships between 22 SDRs (IFR, EGS, and PCBER) from the Orchidaceae and other plant species. The phylogenetic tree was attached with the number of amino acid residues (# AA) and the percentage of amino acid identity of each SDR pairing with Bulboph y llum orientale IFR.
Fig. 4 Neighbor-joining phylogenetic relationships between 22 SDRs (IFR, EGS, and PCBER) from the Orchidaceae and other plant species. The phylogenetic tree was attached with the number of amino acid residues (# AA) and the percentage of amino acid identity of each SDR pairing with Bulboph y llum orientale IFR.CC-BY · From the PDF

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Metadata

Authors
Bhinija, K., Huehne, P. S., Mongkolsuk, S., Sitthimonchai, S., & Satayavivad, J.
ORCID
Huehne, Pattana Srifah
Venue
South African Journal of Botany
Publisher
Elsevier BV
Published
2022-01
Volume
144
Pages
295-304
ISSN
0254-6299
DOI
10.1016/j.sajb.2021.08.034
Cited by
3
References
1
Language
en
Licence
Funders
Chulabhorn Research Institute (PH2020-03)

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