In vivo CRISPR screening identifies BAZ2 chromatin remodelers as druggable regulators of mammalian liver regeneration
Open accessAbstract
Identifying new pathways that regulate mammalian regeneration is challenging due to the paucity of in vivo screening approaches. We employed pooled CRISPR knockout and activation screening in the regenerating liver to evaluate 165 chromatin regulatory proteins. Both screens identified the imitation-SWI chromatin remodeling components Baz2a and Baz2b, not previously implicated in regeneration. In vivo sgRNA, siRNA, and knockout strategies against either paralog confirmed increased regeneration. Distinct BAZ2-specific bromodomain inhibitors, GSK2801 and BAZ2-ICR, resulted in accelerated liver healing after diverse injuries. Inhibitor-treated mice also exhibited improved healing in an inflammatory bowel disease model, suggesting multi-tissue applicability. Transcriptomics on regenerating livers showed increases in ribosomal and cell cycle mRNAs. Surprisingly, CRISPRa screening to define mechanisms showed that overproducing Rpl10a or Rpl24 was sufficient to drive regeneration, whereas Rpl24 haploinsufficiency was rate limiting for BAZ2 inhibition-mediated regeneration. The discovery of regenerative roles for imitation-SWI components provides immediate strategies to enhance tissue repair.
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MOSAICS is distinct from previous Fah KO based regeneration screening systems because it is designed to assess a much higher density of mutant clones during homeostasis, and does not require rapid proliferation based selection of FAH expressing clones.
“MOSAICS is distinct from previous Fah KO based regeneration screening systems9,10 because it is designed to assess a much higher density of mutant clones during homeostasis, and does not require rapid proliferation based selection of FAH expressing clones.”
From Positive selection of somatically mutated clones identifies adaptive pathways in metabolic liver disease (2023) · cites this paper as [10]
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Is liver regeneration key in hepatocellular carcinoma development?
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Targeting the chromatin remodeler BAZ2B mitigates hepatic senescence and MASH fibrosis
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Hepatic zonation determines tumorigenic potential of mutant β-catenin
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SETDB1 promotes mammalian liver regeneration by stimulating cytokine CSF3 in hepatocytes
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In vivo CRISPR screening directly targeting testicular cells
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In vivo screening identifies SPP2, a secreted factor that negatively regulates liver regeneration
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SPACE-seq integrates spatial transcriptomics and lineage tracing in native tissues
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Discovery of First-in-Class BAZ2A/B and BAZ2B-Selective Degraders
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mRNA translational control of regeneration
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Butachlor-Induced BAZ2B Activation Promotes Cardiomyocyte Senescence through cGAS-STING pathway
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Stress triggers global histone synthesis in the liverPreprint
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Self-citationBindingDB Entry 50023134: Discovery of First-in-Class BAZ2A/B and BAZ2B-Selective Degraders.
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- Authors
- Jia, Y., Li, L., Lin, Y.-H., Gopal, P., Shen, S., Zhou, K., Yu, X., Sharma, T., Zhang, Y., Siegwart, D. J., Ready, J. M., & Zhu, H.
- Affiliations
- The University of Texas Southwestern Medical Center (US)
- Corresponding author
- Zhu, Hao
- ORCID
- Venue
- Cell Stem Cell
- Publisher
- Elsevier BV
- Published
- 2022-03
- Volume
- 29
- Issue
- 3
- Pages
- 372-385.e8
- ISSN
- 1875-9777 (ISSN-L)
- 1934-5909
- PMC
- PMC8897233
- OpenAlex
- W4210467898
- Cited by
- 59
- References
- 84
- Citations by year
- 2026: 10 · 2025: 19 · 2024: 14 · 2023: 12 · 2022: 4
- FWCI
- 7.30
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- www.elsevier.com/tdm/userlicense/1.0/ (tdm)
- www.elsevier.com/legal/tdmrep-license (tdm)
- www.elsevier.com/open-access/userlicense/1.0/ (vor, 368 d)
- doi.org/10.15223/policy-017 (stm-asf)
- doi.org/10.15223/policy-037 (stm-asf)
- doi.org/10.15223/policy-012 (stm-asf)
- doi.org/10.15223/policy-029 (stm-asf)
- doi.org/10.15223/policy-004 (stm-asf)
- Locations
- Cell stem cell (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Cancer Institute (R01CA251928)
- National Institute of Diabetes and Digestive and Kidney Diseases (R01DK111588, R01DK125396)
- National Institute of Biomedical Imaging and Bioengineering (R01EB025192)
- Topics
- Health Sciences › Medicine › Hepatology › Liver physiology and pathology
- Health Sciences › Medicine › Surgery › Tissue Engineering and Regenerative Medicine
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Keywords
- liver regeneration, chromatin remodeling, CRISPR screen, CRISPR activation, bromodomain inhibitors, ribosomal proteins, cell cycle genes, inflammatory bowel disease, tissue repair, haploinsufficiency
- MeSH terms
- Bromodomain Containing Proteins, Animals, Chromatin, Chromosomal Proteins, Non-Histone, Liver, Liver Regeneration, Mice, Inbred ICR, Hepatocytes, Cell Proliferation, Mice, Clustered Regularly Interspaced Short Palindromic Repeats
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