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Genetic tracking of mice and other bioproxies to infer human history
Abstract
The long-distance movements made by humans through history are quickly erased by time but can be reconstructed by studying the genetic make-up of organisms that travelled with them. The phylogeography of the western house mouse (Mus musculus domesticus), whose current widespread distribution around the world has been caused directly by the movements of (primarily) European people, has proved particularly informative in a series of recent studies. The geographic distributions of genetic lineages in this commensal have been linked to the Iron Age movements within the Mediterranean region and Western Europe, the extensive maritime activities of the Vikings in the 9th to 11th centuries, and the colonisation of distant landmasses and islands by the Western European nations starting in the 15th century. We review here recent insights into human history based on phylogeographic studies of mice and other species that have travelled with humans, and discuss how emerging genomic methodologies will increase the precision of these inferences.
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“The phylogenies of commensal animals are now being studied as bioproxies for human histories: that is, tracking the histories of animals that have moved at great distances along with humans can serve to document human movements even when all other traces have vanished (Jones et al. 2013).”
From Taking "Pandemic" Seriously: Making the Black Death Global (2015) · cites this paper as Jones et al. 2013
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Across the Indian Ocean: the prehistoric movement of plants and animals
Fuller, D. Q., Boivin, N., Hoogervorst, T., & Allaby, R. (2011) · Antiquity · doi:10.1017/s0003598x00067934 · Cited by 328
On the Origin of Cattle: How Aurochs Became Cattle and Colonized the World
Ajmone‐Marsan, P., Garcia, J. F., & Lenstra, J. A. (2010) · Evolutionary Anthropology Issues News and Reviews · doi:10.1002/evan.20267 · Cited by 287
Rethinking Polynesians origins: A West-Polynesia Triple-I Model
ADDISON, D. J., & MATISOO‐SMITH, E. (2010) · Archaeology in Oceania · doi:10.1002/j.1834-4453.2010.tb00072.x · Cited by 73
Research works printed but not linked: 76
- Gutiérrez-García, 2011, Comparative phylogeography: designing studies while surviving the process, Bioscience, 61, 857, 10.1525/bio.2011.61.11.5 · DOI
- Whiteman, 2007, Co-phylogeography and comparative population genetics of the threatened Galapagos hawk and three ectoparasite species: ecology shapes population histories within parasite communities, Mol. Ecol., 16, 4759, 10.1111/j.1365-294X.2007.03512.x · DOI
- Matisoo-Smith, 2009, Mitochondrial DNA evidence for the spread of Pacific rats through Oceania, Biol. Invasions, 11, 1521, 10.1007/s10530-008-9404-1 · DOI
- Reich, 2012, Reconstructing Native American population history, Nature, 488, 370, 10.1038/nature11258 · DOI · Paper page
- Malmström, 2009, Ancient DNA reveals lack of continuity between Neolithic hunter-gatherers and contemporary Scandinavians, Curr. Biol., 19, 1758, 10.1016/j.cub.2009.09.017 · DOI · Paper page
- Chessa, 2009, Revealing the history of sheep domestication using retrovirus integrations, Science, 324, 532, 10.1126/science.1170587 · DOI
- Murray, 2010, Cattle demographic history modelled from autosomal sequence variation, Philos. Trans. R. Soc. B, 365, 2531, 10.1098/rstb.2010.0103 · DOI
- Myles, 2011, Genetic structure and domestication history of the grape, Proc. Natl. Acad. Sci. U.S.A., 108, 3530, 10.1073/pnas.1009363108 · DOI
- van Heerwaarden, 2011, Genetic signals of origin, spread, and introgression in a large sample of maize landraces, Proc. Natl. Acad. Sci. U.S.A., 108, 1088, 10.1073/pnas.1013011108 · DOI
- Larson, 2007, Ancient DNA, pig domestication, and the spread of the Neolithic into Europe, Proc. Natl. Acad. Sci. U.S.A., 104, 15276, 10.1073/pnas.0703411104 · DOI
- Larson, 2007, Phylogeny and ancient DNA of Sus provides insights into Neolithic expansion in Island Southeast Asia and Oceania, Proc. Natl. Acad. Sci. U.S.A., 104, 4834, 10.1073/pnas.0607753104 · DOI
- Larson, 2012, Rethinking dog domestication by integrating genetics, archeology, and biogeography, Proc. Natl. Acad. Sci. U.S.A., 109, 8878, 10.1073/pnas.1203005109 · DOI · Paper page
- Jesse, 2011, Phylogeography of a land snail suggests trans-Mediterranean Neolithic transport, PLoS ONE, 6, e20734, 10.1371/journal.pone.0020734 · DOI
- Keller, 2007, Drosophila melanogaster's history as a human commensal, Curr. Biol., 17, R77, 10.1016/j.cub.2006.12.031 · DOI · Paper page
- Jacob, 2010, The rat: a model used in biomedical research, Methods Mol. Biol., 597, 1, 10.1007/978-1-60327-389-3_1 · DOI
- Aplin, 2011, Multiple geographic origins of commensalism and complex dispersal history of black rats, PLoS ONE, 6, e26357, 10.1371/journal.pone.0026357 · DOI
- Tollenaere, 2010, Phylogeography of the introduced species Rattus rattus in the western Indian Ocean, with special emphasis on the colonization history of Madagascar, J. Biogeogr., 37, 398, 10.1111/j.1365-2699.2009.02228.x · DOI
- Dominguez-Bello, 2011, The human microbiota as a marker for migrations of individuals and populations, Ann. Rev. Anthropol., 40, 451, 10.1146/annurev-anthro-081309-145711 · DOI
- Keim, 2009, Humans and evolutionary and ecological forces shaped the phylogeography of recently emerged diseases, Nat. Rev. Microbiol., 7, 813, 10.1038/nrmicro2219 · DOI
- Morand, 2012, Phylogeography helps with investigating the building of human parasite communities, Parasitology, 139, 1966, 10.1017/S0031182012000662 · DOI
- Monot, 2009, Comparative genomic and phylogeographic analysis of Mycobacterium leprae, Nature Genet., 41, 1282, 10.1038/ng.477 · DOI
- Cucchi, 2012, On the origin of the house mouse synanthropy and dispersal in the Near East and Europe: zooarchaeological review and perspectives, 65
- Duvaux, 2011, Isolation and gene flow: inferring the speciation history of European house mice, Mol. Ecol., 20, 5248, 10.1111/j.1365-294X.2011.05343.x · DOI
- Nunome, 2010, Detection of recombinant haplotypes in wild mice (Mus musculus) provides new insights into the origin of Japanese mice, Mol. Ecol., 19, 2474
- Rajabi-Maham, 2012, The south-eastern house mouse Mus musculus castaneus (Rodentia: Muridae) is a polytypic subspecies, Biol. J. Linn. Soc., 107, 295, 10.1111/j.1095-8312.2012.01957.x · DOI
- Yang, 2011, Subspecific origin and haplotype diversity in the laboratory mouse, Nat. Genet., 43, 648, 10.1038/ng.847 · DOI
- Jones, 1995, Differential male genetic success determines gene flow in an experimentally manipulated mouse-population, Proc. R. Soc. Lond. B, 260, 251, 10.1098/rspb.1995.0088 · DOI
- Britton-Davidian, 2007, Patterns of genic diversity and structure in a species undergoing rapid chromosomal radiation: an allozyme analysis of house mice from the Madeira archipelago, Heredity, 99, 432, 10.1038/sj.hdy.6801021 · DOI
- Hardouin, 2010, House mouse colonization patterns on the sub-Antarctic Kerguelen Archipelago suggest singular primary invasions and resilience against re-invasion, BMC Evol. Biol., 10, 325, 10.1186/1471-2148-10-325 · DOI
- Bonhomme, 2011, Genetic differentiation of the house mouse around the Mediterranean basin: matrilineal footprints of early and late colonization, Proc. R. Soc. B, 278, 1034, 10.1098/rspb.2010.1228 · DOI
- Jones, 2012, Fellow travellers: a concordance of colonization patterns between mice and men in the North Atlantic region, BMC Evol. Biol., 12, 35, 10.1186/1471-2148-12-35 · DOI
- Geraldes, 2011, Higher differentiation among subspecies of the house mouse (Mus musculus) in genomic regions with low recombination, Mol. Ecol., 20, 4722, 10.1111/j.1365-294X.2011.05285.x · DOI
- Staubach, 2012, Genome patterns of selection and introgression of haplotypes in natural populations of the house mouse (Mus musculus), PLoS Genet., 8, e1002891, 10.1371/journal.pgen.1002891 · DOI
- Jones, 2011, The expansion of the house mouse into north-western Europe, J. Zool., 283, 257, 10.1111/j.1469-7998.2010.00767.x · DOI
- Pinhasi, 2012, The genetic history of Europeans, Trends Genet., 10, 496, 10.1016/j.tig.2012.06.006 · DOI
- Lacan, 2011, Ancient DNA reveals male diffusion through the Neolithic Mediterranean route, Proc. Natl. Acad. Sci. U.S.A., 108, 9788, 10.1073/pnas.1100723108 · DOI
- Haak, 2010, Ancient DNA from European early Neolithic farmers reveals their Near Eastern affinities, PLoS Biol., 8, e1000536, 10.1371/journal.pbio.1000536 · DOI · Paper page
- Bouckaert, 2012, Mapping the origins and expansion of the Indo-European language family, Science, 337, 957, 10.1126/science.1219669 · DOI
- Rajabi-Maham, 2008, Phylogeography and postglacial expansion of Mus musculus domesticus inferred from mitochondrial DNA coalescent, from Iran to Europe, Mol. Ecol., 17, 627, 10.1111/j.1365-294X.2007.03601.x · DOI
- Solano, 2012, Multiple origins of the western European house mouse in the Aeolian Archipelago: clues from mtDNA and chromosomes, Biol. Invasions
- Gabriel, 2011, Of mice and ‘convicts’: origin of the Australian house mouse, Mus musculus, PLoS ONE, 6, e28622, 10.1371/journal.pone.0028622 · DOI
- Searle, 2009, Of mice and (Viking?) men: phylogeography of British and Irish house mice, Proc. R. Soc. B, 276, 201, 10.1098/rspb.2008.0958 · DOI
- Duffy, 2012, Biology and impacts of Pacific Island invasive species. 7. The domestic cat (Felis catus), Pac. Sci., 66, 173, 10.2984/66.2.7 · DOI
- Searle, 2009, The diverse origins of New Zealand house mice, Proc. R. Soc. B, 276, 209, 10.1098/rspb.2008.0959 · DOI
- Goodacre, 2005, Genetic evidence for a family-based Scandinavian settlement of Shetland and Orkney during the Viking periods, Heredity, 95, 129, 10.1038/sj.hdy.6800661 · DOI
- Price, 2009, The impact of divergence time on the nature of population structure: an example from Iceland, PLoS Genet., 5, e1000505, 10.1371/journal.pgen.1000505 · DOI
- Als, 2006, Highly discrepant proportions of female and male Scandinavian and British Isles ancestry within the isolated population of the Faroe Islands, Eur. J. Hum. Genet., 14, 497, 10.1038/sj.ejhg.5201578 · DOI
- Jones, 2011, A molecular characterization of the charismatic Faroe house mouse, Biol. J. Linn. Soc., 102, 471, 10.1111/j.1095-8312.2010.01597.x · DOI
- Arge, 2005, Viking and medieval settlement in the Faroes: people, place and environment, Hum. Ecol., 33, 597, 10.1007/s10745-005-4745-1 · DOI
- Goios, 2007, mtDNA phylogeny and evolution of laboratory mouse strains, Genome Res., 17, 293, 10.1101/gr.5941007 · DOI
- Yang, 2009, A customized and versatile high-density genotyping array for the mouse, Nat. Methods, 6, 663, 10.1038/nmeth.1359 · DOI
- Beaumont, 2010, Approximate Bayesian Computation in evolution and ecology, Ann. Rev. Ecol. Evol. Syst., 41, 379, 10.1146/annurev-ecolsys-102209-144621 · DOI
- Zalloua, 2008, Identifying genetic traces of historical expansions: Phoenician footprints in the Mediterranean, Am. J. Hum. Genet., 83, 633, 10.1016/j.ajhg.2008.10.012 · DOI
- Ronquist, 2012, MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space, Syst. Biol., 61, 539, 10.1093/sysbio/sys029 · DOI
- Huson, 2011, A survey of combinatorial methods for phylogenetic networks, Genome Biol. Evol., 3, 23, 10.1093/gbe/evq077 · DOI
- Ho, 2011, Time-dependent rates of molecular evolution, Mol. Ecol., 20, 3087, 10.1111/j.1365-294X.2011.05178.x · DOI
- Drummond, 2012, Bayesian phylogenetics with BEAUti and the BEAST 1.7, Mol. Biol. Evol., 29, 1969, 10.1093/molbev/mss075 · DOI
- Herman, 2011, Post-glacial partitioning of mitochondrial genetic variation in the field vole, Proc. R. Soc. B, 278, 3601, 10.1098/rspb.2011.0321 · DOI
- Knowles, 2009, Statistical phylogeography, Ann. Rev. Ecol. Evol. Syst., 40, 593, 10.1146/annurev.ecolsys.38.091206.095702 · DOI
- Stoneking, 2011, Learning about human population history from ancient and modern genomes, Nat. Rev. Genet., 12, 603, 10.1038/nrg3029 · DOI
- Gilbert, 2005, Assessing ancient DNA studies, TREE, 20, 541
- Dewar, 2012, Madagascar: a history of arrivals, what happened, and will happen next, Ann. Rev. Anthropol., 41, 495, 10.1146/annurev-anthro-092611-145758 · DOI
- Hanotte, 2002, African pastoralism: genetic imprints of origins and migrations, Science, 296, 336, 10.1126/science.1069878 · DOI · Paper page
- Omar, 2011, Phylogenetic relationships of Malayan and Malagasy pygmy shrews of the genus Suncus (Soricomorpha: Soricidae) inferred from mitochondrial cytochrome b gene sequences, Raffles Bull. Zool., 59, 237
- Beaujard, 2011, The first migrants to Madagascar and their introduction of plants: linguistic and ethnological evidence, Azania, 46, 169, 10.1080/0067270X.2011.580142 · DOI
- Faure, 2009, An archaeological and historical review of the relationships between felids and people, Anthrozoos, 22, 221, 10.2752/175303709X457577 · DOI
- O’Brien, 2008, State of cat genomics, Trends Genet., 24, 268, 10.1016/j.tig.2008.03.004 · DOI
- Vigne, 2012, First wave of cultivators spread to Cyprus at least 10,600 y ago, Proc. Natl. Acad. Sci. U.S.A., 109, 8445, 10.1073/pnas.1201693109 · DOI
- Driscoll, 2009, From wild animals to domestic pets, an evolutionary view of domestication, Proc. Natl. Acad. Sci. U.S.A., 106, 9971, 10.1073/pnas.0901586106 · DOI · Paper page
- Lipinski, 2008, The ascent of cat breeds: genetic evaluations of breeds and worldwide random-bred populations, Genomics, 91, 12, 10.1016/j.ygeno.2007.10.009 · DOI
- Todd, 1977, Cats and commerce, Sci. Am., 237, 100, 10.1038/scientificamerican1177-100 · DOI
- Jones, 2010, Norwegian house mice (Mus musculus musculus/domesticus): distributions, routes of colonization and patterns of hybridization, Mol. Ecol., 19, 5252, 10.1111/j.1365-294X.2010.04874.x · DOI
- Förster, 2009, Molecular insights into the colonization and chromosomal diversification of Madeiran house mice, Mol. Ecol., 18, 4477, 10.1111/j.1365-294X.2009.04344.x · DOI
- Kelley, 1979, Non-Mediterranean influences that shaped the Atlantic in the early Portolan charts, Imago Mundi, 31, 18, 10.1080/03085697908592481 · DOI
- Prager, 1993, Mitochondrial DNA sequence diversity and the colonization of Scandinavia by house mice from East Holstein, Biol. J. Linn. Soc., 50, 85, 10.1111/j.1095-8312.1993.tb00920.x · DOI
- Harrisson, 1933, The mice of St Kilda, with especial reference to their prospects of extinction and present status, J. Anim. Ecol., 2, 109, 10.2307/943 · DOI
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Boivin, N. L., Zeder, M. A., Fuller, D. Q., Crowther, A., Larson, G., Erlandson, J. M., Denham, T., & Petraglia, M. D. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1525200113 · Cited by 837
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Metadata
- Authors
- Jones, E. P., Eager, H. M., Gabriel, S. I., Jóhannesdóttir, F., & Searle, J. B.
- Venue
- Trends in Genetics
- Publisher
- Elsevier BV
- Published
- 2013-05
- Volume
- 29
- Issue
- 5
- Pages
- 298-308
- ISSN
- 0168-9525
- Cited by
- 104
- References
- 3
- Language
- en
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