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The DOI matches its Crossref record; 9 of the 9 references it cites were found in a registry or an index.

Reconstructing Native American population history

Reich, David, Patterson, Nick, Campbell, Desmond, Tandon, Arti, Mazieres, Stéphane, Ray, Nicolas, Parra, Maria V., Rojas, Winston, Duque, Constanza, Mesa, Natalia, García, Luis F., Triana, Omar, Blair, Silvia, Maestre, Amanda, Dib, Juan C., Bravi, Claudio M., Bailliet, Graciela, Corach, Daniel, Hünemeier, Tábita, Bortolini, Maria Cátira, Salzano, Francisco M., Petzl-Erler, María Luiza, Acuña-Alonzo, Victor, Aguilar-Salinas, Carlos, Canizales-Quinteros, Samuel, Tusié-Luna, Teresa, Riba, Laura, Rodríguez-Cruz, Maricela, Lopez-Alarcón, Mardia, Coral-Vazquez, Ramón, Canto-Cetina, Thelma, Silva-Zolezzi, Irma, Fernandez-Lopez, Juan Carlos, Contreras, Alejandra V., Jimenez-Sanchez, Gerardo, Gómez-Vázquez, Maria José, Molina, Julio, Carracedo, Ángel, Salas, Antonio, Gallo, Carla, Poletti, Giovanni, Witonsky, David B., Alkorta-Aranburu, Gorka, Sukernik, Rem I., Osipova, Ludmila, Fedorova, Sardana A., Vasquez, René, Villena, Mercedes, Moreau, Claudia, Barrantes, Ramiro, Pauls, David, Excoffier, Laurent, Bedoya, Gabriel, Rothhammer, Francisco, Dugoujon, Jean-Michel, Larrouy, Georges, Klitz, William, Labuda, Damian, Kidd, Judith, Kidd, Kenneth, Di Rienzo, Anna, Freimer, Nelson B., Price, Alkes L., Ruiz-Linares, Andrés·2012·Nature
DOI 10.1038/nature11258PMC PMC3615710
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  • Allele frequency based D-statistics for 19 published Siberian populations, excluding Naukan, are compatible with a diversification pattern of [Siberian, [NA, SA]], with no evidence for gene-flow into the NA group.

    “We analysed 19 different published Siberian populations and found that allele frequency based D-statistics in all cases, with the exclusion of Naukan, were compatible with a diversification pattern of [Siberian, [NA, SA]], with no evidence for gene-flow into the NA group (SI15), a pattern that agrees with previously published results22.”

    From The genome of a Late Pleistocene human from a Clovis burial site in western Montana (2014) · cites this paper as [22]

    The Abstract reports an early split between Asians and most Native Americans and says 47 of 52 tested Native American populations were consistent with a shared First American ancestry. But it also reports additional Asian gene flow into four northern North American populations, so it does not support an unqualified absence of gene flow into the NA group. The Methods describe tests using nine Siberian outgroups, excluding both Naukan and Chukchi, rather than the citing authors’ analysis of 19 populations. (LLM, conf=0.86)

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Citations

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Research works printed but not linked: 32

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  2. Meltzer, D. J. First Peoples in a New World: Colonizing Ice Age America (Univ. of California Press, 2009) · DOI · Paper page
  3. Goebel, T., Waters, M. R. & O’Rourke, D. H. The late Pleistocene dispersal of modern humans in the Americas. Science 319, 1497–1502 (2008) · DOI · Paper page
  4. Dillehay, T. D. Probing deeper into first American studies. Proc. Natl Acad. Sci. USA 106, 971–978 (2009) · DOI
  5. O’Rourke, D. H. & Raff, J. A. The human genetic history of the Americas: the final frontier. Curr. Biol. 20, R202–R207 (2010) · DOI
  6. Tamm, E. et al. Beringian standstill and spread of Native American founders. PLoS ONE 2, e829 (2007) · DOI · Paper page
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  8. Fagundes, N. J. et al. Mitochondrial population genomics supports a single pre-Clovis origin with a coastal route for the peopling of the Americas. Am. J. Hum. Genet. 82, 583–592 (2008) · DOI · Paper page
  9. Greenberg, J. H., Turner, C. G. & Zegura, S. L. The settlement of the Americas: a comparison of the linguistic, dental, and genetic evidence. Curr. Anthropol. 27, 477–497 (1986) · DOI
  10. Lell, J. T. et al. The dual origin and Siberian affinities of Native American Y chromosomes. Am. J. Hum. Genet. 70, 192–206 (2002) · DOI · Paper page
  11. Bortolini, M. C. et al. Y-chromosome evidence for differing ancient demographic histories in the Americas. Am. J. Hum. Genet. 73, 524–539 (2003) · DOI
  12. Volodko, N. V. et al. Mitochondrial genome diversity in arctic Siberians, with particular reference to the evolutionary history of Beringia and Pleistocenic peopling of the Americas. Am. J. Hum. Genet. 82, 1084–1100 (2008) · DOI
  13. Ray, N. et al. A statistical evaluation of models for the initial settlement of the American continent emphasizes the importance of gene flow with Asia. Mol. Biol. Evol. 27, 337–345 (2010) · DOI
  14. de Azevedo, S. et al. Evaluating microevolutionary models for the early settlement of the New World: the importance of recurrent gene flow with Asia. Am. J. Phys. Anthropol. 146, 539–552 (2011) · DOI
  15. Perego, U. A. et al. Distinctive Paleo-Indian migration routes from Beringia marked by two rare mtDNA haplogroups. Curr. Biol. 19, 1–8 (2009) · DOI · Paper page
  16. Alexander, D. H., Novembre, J. & Lange, K. Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 19, 1655–1664 (2009) · DOI · Paper page
  17. Ruhlen, M. A Guide to the World’s Languages (Stanford Univ. Press, 1991)
  18. Schroeder, K. B. et al. A private allele ubiquitous in the Americas. Biol. Lett. 3, 218–223 (2007) · DOI
  19. Ray, N. PATHMATRIX: a geographical information system tool to compute effective distances among samples. Mol. Ecol. Notes 5, 177–180 (2005) · DOI
  20. Wang, S. et al. Genetic variation and population structure in native Americans. PLoS Genet. 3, e185 (2007) · DOI
  21. Yang, N. N. et al. Contrasting patterns of nuclear and mtDNA diversity in Native American populations. Ann. Hum. Genet. 74, 525–538 (2010) · DOI
  22. Brown, M. D. et al. mtDNA haplogroup X: an ancient link between Europe/Western Asia and North America? Am. J. Hum. Genet. 63, 1852–1861 (1998) · DOI
  23. Karafet, T. M. et al. Ancestral Asian source(s) of new world Y-chromosome founder haplotypes. Am. J. Hum. Genet. 64, 817–831 (1999) · DOI
  24. Balter, M. Archaeology. The peopling of the Aleutians. Science 335, 158–161 (2012) · DOI
  25. Cooke, R. Prehistory of native Americans on the Central American land bridge: Colonization, dispersal, and divergence. J. Archaeol. Res. 13, 129–187 (2005) · DOI
  26. Bryc, K. et al. Colloquium paper: genome-wide patterns of population structure and admixture among Hispanic/Latino populations. Proc. Natl Acad. Sci. USA 107 (Suppl 2). 8954–8961 (2010) · DOI · Paper page
  27. Wall, J. D. et al. Genetic variation in Native Americans, inferred from Latino SNP and resequencing data. Mol. Biol. Evol. 28, 2231–2237 (2011) · DOI
  28. Browning, S. R. & Browning, B. L. Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am. J. Hum. Genet. 81, 1084–1097 (2007) · DOI
  29. Saitou, N. & Nei, M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406–425 (1987)
  30. Liu, K. & Muse, S. V. PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21, 2128–2129 (2005) · DOI
  31. Greenberg, J. H. Language in the Americas (Stanford Univ. Press, 1987)
  32. Campbell, L. American Indian languages: the historical linguistics of Native America (Oxford Univ. Press, 1997) · DOI

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Metadata

Authors
Reich, D., Patterson, N., Campbell, D., Tandon, A., Mazieres, S., Ray, N., Parra, M. V., Rojas, W., Duque, C., Mesa, N., García, L. F., Triana, O., Blair, S., Maestre, A., Dib, J. C., Bravi, C. M., Bailliet, G., Corach, D., Hünemeier, T., Bortolini, M. C., Salzano, F. M., Petzl-Erler, M. L., Acuña-Alonzo, V., Aguilar-Salinas, C., Canizales-Quinteros, S., Tusié-Luna, T., Riba, L., Rodríguez-Cruz, M., Lopez-Alarcón, M., Coral-Vazquez, R., Canto-Cetina, T., Silva-Zolezzi, I., Fernandez-Lopez, J. C., Contreras, A. V., Jimenez-Sanchez, G., Gómez-Vázquez, M. J., Molina, J., Carracedo, Á., Salas, A., Gallo, C., Poletti, G., Witonsky, D. B., Alkorta-Aranburu, G., Sukernik, R. I., Osipova, L., Fedorova, S. A., Vasquez, R., Villena, M., Moreau, C., Barrantes, R., Pauls, D., Excoffier, L., Bedoya, G., Rothhammer, F., Dugoujon, J.-M., Larrouy, G., Klitz, W., Labuda, D., Kidd, J., Kidd, K., Di Rienzo, A., Freimer, N. B., Price, A. L., & Ruiz-Linares, A.
Venue
Nature
Publisher
Springer Science and Business Media LLC
Published
2012-07-11
Volume
488
Issue
7411
Pages
370-374
ISSN
  • 0028-0836
  • 1476-4687
DOI
10.1038/nature11258
PMC
PMC3615710
Cited by
696
References
9
Language
en
Update notices
erratum (2012-11-07)
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