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Somatic mosaicism and allele complexity induced by CRISPR/Cas9 RNA injections in mouse zygotes
Open accessAbstract
Tyrosinase is the rate-limiting enzyme for the production of melanin pigmentation. In the mouse and other animals, homozygous null mutations in the Tyrosinase gene (Tyr) result in the absence of pigmentation, i.e. albinism. Here we used the CRISPR/Cas9 system to generate mono- and bi-allelic null mutations in the Tyr locus by zygote injection of two single-guide and Cas9 RNAs. Injection into C57BL/6N wild-type embryos resulted in one completely albino founder carrying two different Tyr mutations. In addition, three pigmentation mosaics and fully pigmented littermates were obtained that transmitted new mutant Tyr alleles to progeny in test crosses with albinos. Injection into Tyr heterozygous (B6CBAF1/J×FVB/NJ) zygotes resulted in the generation of numerous albinos and also mice with a graded range of albino mosaicism. Deep sequencing revealed that the majority of the albinos and the mosaics had more than two new mutant alleles. These visual phenotypes and molecular genotypes highlight the somatic mosaicism and allele complexity in founders that occurs for targeted genes during CRISPR/Cas9-mediated mutagenesis by zygote injection in mice.
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“We expect incomplete penetrance of the perturbation in this dataset because of the mosaic nature of Cas9 mutagenesis29.”
From Quantifying the effect of experimental perturbations at single-cell resolution (2021) · cites this paper as [29]
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Cites
R: A Language and Environment for Statistical Computing
R Core Team (2000) · doi:10.32614/r.manuals · Cited by 355,893
Fast gapped-read alignment with Bowtie 2
Langmead, B., & Salzberg, S. L. (2012) · Nature Methods · doi:10.1038/nmeth.1923 · Cited by 56,400
A Programmable Dual-RNA–Guided DNA Endonuclease in Adaptive Bacterial Immunity
Jinek, M., Chylinski, K., Fonfara, I., Hauer, M., Doudna, J. A., & Charpentier, E. (2012) · Science · doi:10.1126/science.1225829 · Cited by 17,116
Multiplex Genome Engineering Using CRISPR/Cas Systems
Cong, L., Ran, F. A., Cox, D., Lin, S., Barretto, R., Habib, N., Hsu, P. D., Wu, X., Jiang, W., Marraffini, L. A., et al. (2013) · Science · doi:10.1126/science.1231143 · Cited by 15,339
Manipulating the mouse embryo: A laboratory manual
Hogan, B. L. M., Costantini, F. D., & Lacy, E. (1986) · Cited by 4,460
Haplotype-based variant detection from short-read sequencing
Garrison, E., & Marth, G. (2012) · arXiv · doi:10.48550/arxiv.1207.3907 · Cited by 3,700
Wang, H., Yang, H., Shivalila, C. S., Dawlaty, M. M., Cheng, A. W., Zhang, F., & Jaenisch, R. (2013) · Cell · doi:10.1016/j.cell.2013.04.025 · Cited by 3,495
Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity
Ran, F. A., Hsu, P. D., Lin, C.-Y., Gootenberg, J. S., Konermann, S., Trevino, A. E., Scott, D. A., Inoue, A., Matoba, S., Zhang, Y., et al. (2013) · Cell · doi:10.1016/j.cell.2013.08.021 · Cited by 3,299
High-Frequency off-Target Mutagenesis Induced by CRISPR-Cas Nucleases in Human Cells
Fu, Y., Foden, J. A., Khayter, C., Maeder, M. L., Reyon, D., Joung, J. K., & Sander, J. D. (2013) · Nature Biotechnology · doi:10.1038/nbt.2623 · Cited by 3,292
Efficient genome editing in zebrafish using a CRISPR-Cas system
Hwang, W. Y., Fu, Y., Reyon, D., Maeder, M. L., Tsai, S. Q., Sander, J. D., Peterson, R. T., Yeh, J.-R. J., & Joung, J. K. (2013) · Nature Biotechnology · doi:10.1038/nbt.2501 · Cited by 2,937
CRISPR/Cas, the Immune System of Bacteria and Archaea
Horvath, P., & Barrangou, R. (2010) · Science · doi:10.1126/science.1179555 · Cited by 2,471
Manipulating the Mouse Embryo: A Laboratory Manual
Behringer, R. R., Gertsenstein, M., Nagy, K. V., & Nagy, A. (2002) · Cited by 2,046
Self-citationRNA-guided genetic silencing systems in bacteria and archaea
Wiedenheft, B., Sternberg, S. H., & Doudna, J. A. (2012) · Nature · doi:10.1038/nature10886 · Cited by 1,851
Yang, H., Wang, H., Shivalila, C. S., Cheng, A. W., Shi, L., & Jaenisch, R. (2013) · Cell · doi:10.1016/j.cell.2013.08.022 · Cited by 1,596
Efficient multiplex biallelic zebrafish genome editing using a CRISPR nuclease system
Jao, L.-E., Wente, S. R., & Chen, W. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1308335110 · Cited by 1,311
Jiang, W., Zhou, H., Bi, H., Fromm, M., Yang, B., & Weeks, D. P. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt780 · Cited by 1,282
Niu, Y., Shen, B., Cui, Y., Chen, Y., Wang, J., Wang, L., Kang, Y., Zhao, X., Si, W., Li, W., et al. (2014) · Cell · doi:10.1016/j.cell.2014.01.027 · Cited by 1,033
Heritable genome editing in C. elegans via a CRISPR-Cas9 system
Friedland, A. E., Tzur, Y. B., Esvelt, K. M., Colaiácovo, M. P., Church, G. M., & Calarco, J. A. (2013) · Nature Methods · doi:10.1038/nmeth.2532 · Cited by 899
Highly Efficient Targeted Mutagenesis of Drosophila with the CRISPR/Cas9 System
Bassett, A. R., Tibbit, C., Ponting, C. P., & Liu, J. (2013) · Cell Reports · doi:10.1016/j.celrep.2013.06.020 · Cited by 882
Efficient genome modification by CRISPR-Cas9 nickase with minimal off-target effects
Shen, B., Zhang, W., Zhang, J., Zhou, J., Wang, J., Chen, L., Wang, L., Hodgkins, A., Iyer, V., Huang, X., et al. (2014) · Nature Methods · doi:10.1038/nmeth.2857 · Cited by 769
Heritable gene targeting in the mouse and rat using a CRISPR-Cas system
Li, D., Qiu, Z., Shao, Y., Chen, Y., Guan, Y., Liu, M., Li, Y., Wang, L., Wang, L., Lu, X., et al. (2013) · Nature Biotechnology · doi:10.1038/nbt.2661 · Cited by 653
Belhaj, K., Chaparro‐Garcia, A., Kamoun, S., & Nekrasov, V. (2013) · Plant Methods · doi:10.1186/1746-4811-9-39 · Cited by 603
Mashiko, D., Fujihara, Y., Satouh, Y., Miyata, H., Isotani, A., & Ikawa, M. (2013) · Scientific Reports · doi:10.1038/srep03355 · Cited by 435
Highly efficient gene knockout in mice and zebrafish with RNA-guided endonucleasesPreprint
Sung, Y. H., Kim, J. M., Kim, H.-T., Lee, J., Jeon, J., Jin, Y., Choi, J.-H., Ban, Y. H., Ha, S., Kim, C., et al. (2013) · Genome Research · doi:10.1101/gr.163394.113 · Cited by 287
Simple and efficient CRISPR/Cas9‐mediated targeted mutagenesis in Xenopus tropicalis
Nakayama, T., Fish, M. B., Fisher, M. A., Oomen, J., Thomsen, G. H., & Grainger, R. M. (2013) · genesis · doi:10.1002/dvg.22720 · Cited by 283
Gene control of mammalian pigmentary differentiation. I. Clonal origin of melanocytes.
Mintz, B. (1967) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.58.1.344 · Cited by 256
TALE nucleases: tailored genome engineering made easy
Mussolino, C., & Cathomen, T. (2012) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2012.01.013 · Cited by 214
Yokoyama, T., Silversides, D. W., Waymire, K. G., Kwon, B. S., Takeuchi, T., & Overbeek, P. A. (1990) · Nucleic Acids Research · doi:10.1093/nar/18.24.7293 · Cited by 206
Biallelic genome modification in F 0 Xenopus tropicalis embryos using the CRISPR/Cas system
Blitz, I. L., Biesinger, J., Xie, X. S., & Cho, K. W. Y. (2013) · genesis · doi:10.1002/dvg.22719 · Cited by 185
Horii, T., Arai, Y., Yamazaki, M., Morita, S., Kimura, M., Itoh, M., Abe, Y., & Hatada, I. (2014) · Scientific Reports · doi:10.1038/srep04513 · Cited by 175
Rescue of the albino phenotype by introduction of a functional tyrosinase gene into mice.
Beermann, F., Ruppert, S., Hümmler, E., Bosch, F. X., Müller, G., Rüther, U., & Schütz, G. (1990) · The EMBO Journal · doi:10.1002/j.1460-2075.1990.tb07470.x · Cited by 174
Efficient RNA/Cas9-mediated genome editing in Xenopus tropicalis
Guo, X., Zhang, T., Hu, Z. M., Zhang, Y., Shi, Z., Wang, Q., Cui, Y., Wang, F., Zhao, H., & Chen, Y. (2014) · Development · doi:10.1242/dev.099853 · Cited by 170
Dual sgRNAs facilitate CRISPR/Cas9‐mediated mouse genome targeting
Zhou, J., Wang, J., Shen, B., Chen, L., Yang, S., Yang, J., Zhang, W., Tian, X., & Huang, X. (2014) · FEBS Journal · doi:10.1111/febs.12735 · Cited by 148
CRISPR-based technologies: prokaryotic defense weapons repurposed
Terns, R. M., & Terns, M. P. (2014) · Trends in Genetics · doi:10.1016/j.tig.2014.01.003 · Cited by 112
Shibahara, S., Okinaga, S., Tomita, Y., Takeda, A., Yamamoto, H., Sato, M., & Takeuchi, T. (1990) · European Journal of Biochemistry · doi:10.1111/j.1432-1033.1990.tb15510.x · Cited by 107
Zinc finger nuclease technology heralds a new era in mammalian transgenesis
Provost, F. L., Lillico, S. G., Passet, B., Young, R. A., Whitelaw, B., & Vilotte, J.-L. (2009) · Trends in biotechnology · doi:10.1016/j.tibtech.2009.11.007 · Cited by 90
Molecular basis of mouse Himalayan mutation
Kwon, B. S., Halaban, R., & Chintamaneni, C. D. (1989) · Biochemical and Biophysical Research Communications · doi:10.1016/0006-291x(89)91588-x · Cited by 71
Efficient generation of genome-modified mice via offset-nicking by CRISPR/Cas system
Fujii, W., Onuma, A., Sugiura, K., & Naito, K. (2014) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2014.01.141 · Cited by 66
Genetic activity at the albino locus in Cattanach’s insertion in the mouse
Deol, M. S., Truslove, G. M., & McLaren, A. L. D. (1986) · Development · doi:10.1242/dev.96.1.295 · Cited by 7
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Efficient generation of mouse models of human diseases via ABE- and BE-mediated base editing
Liu, Z., Lu, Z., Yang, G., Huang, S., Li, G., Feng, S., Liu, Y., Li, J., Yu, W., Zhang, Y., et al. (2018) · Nature Communications · doi:10.1038/s41467-018-04768-7 · Cited by 2,103
CRISPR/Cas9-mediated gene editing in human tripronuclear zygotes
Liang, P., Xu, Y., Zhang, X., Ding, C., Huang, R., Zhang, Z., Lv, J., Xie, X., Chen, Y., Li, Y., et al. (2015) · Protein & Cell · doi:10.1007/s13238-015-0153-5 · Cited by 1,135
Prevention of muscular dystrophy in mice by CRISPR/Cas9–mediated editing of germline DNA
Long, C., McAnally, J. R., Shelton, J. M., Mireault, A. A., Bassel-Duby, R., & Olson, E. N. (2014) · Science · doi:10.1126/science.1254445 · Cited by 720
Genome editing reveals a role for OCT4 in human embryogenesis
Fogarty, N. M. E., McCarthy, A., Snijders, K. E., Powell, B. E., Kubikova, N., Blakeley, P., Lea, R., Elder, K., Wamaitha, S. E., Kim, D., et al. (2017) · Nature · doi:10.1038/nature24033 · Cited by 392
Naturally Occurring Off-Switches for CRISPR-Cas9
Pawluk, A., Amrani, N., Zhang, Y., García, B., Hidalgo-Reyes, Y., Lee, J., Edraki, A., Shah, M. K., Sontheimer, E. J., Maxwell, K. L., et al. (2016) · Cell · doi:10.1016/j.cell.2016.11.017 · Cited by 392
Metadata
- Authors
- Yen, S.-T., Zhang, M., Deng, J. M., Usman, S. J., Smith, C. N., Parker-Thornburg, J., Swinton, P. G., Martin, J. F., & Behringer, R. R.
- Affiliations
- The University of Texas MD Anderson Cancer Center (US)
- Baylor College of Medicine (US)
- Corresponding author
- Behringer, Richard R.
- Venue
- Developmental Biology
- Publisher
- Elsevier BV
- Published
- 2014-09
- Volume
- 393
- Issue
- 1
- Pages
- 3-9
- ISSN
- 0012-1606 (ISSN-L)
- PMC
- PMC4166609
- OpenAlex
- W2089929813
- Cited by
- 300
- References
- 40
- Citations by year
- 2026: 15 · 2025: 4 · 2024: 19 · 2023: 20 · 2022: 21 · 2021: 22 · 2020: 30 · 2019: 40 · 2018: 31 · 2017: 36 · 2016: 32 · 2015: 21 · 2014: 9
- FWCI
- 13.40
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Developmental Biology (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institutes of Health (DE023177, CA016672)
- Smith Foundation to J.F.M. and National Institutes of Health (HD030284)
- University of Texas MD Anderson Genetics
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › CRISPR and Genetic Engineering
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Animal Genetics and Reproduction
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Pluripotent Stem Cells Research
- Keywords
- somatic mosaicism, CRISPR/Cas9, zygote injection, tyrosinase, TYR gene, albinism, melanin pigmentation, targeted mutagenesis, mouse embryo
- MeSH terms
- Gene Editing, CRISPR-Associated Protein 9, Albinism, Alleles, Animals, Bacterial Proteins, Base Sequence, Endonucleases, Female, Male, Melanins, Mice, Inbred C57BL, Mosaicism, Mutation, Pigmentation, RNA, Messenger, Monophenol Monooxygenase, Zygote, Mutagenesis, Sequence Analysis, DNA, Mice, RNA, Small Untranslated, High-Throughput Nucleotide Sequencing, CRISPR-Cas Systems, CRISPR-Associated Proteins
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