Advances and prospects in metabolic engineering of Zymomonas mobilis

Automated design of synthetic ribosome binding sites to control protein expression

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Regulatory RNAs in Bacteria

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Consolidated bioprocessing of cellulosic biomass: an update

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Engineering Cellular Metabolism

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Complete Chemical Synthesis, Assembly, and Cloning of a <i>Mycoplasma genitalium</i> Genome

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Synthetic protein scaffolds provide modular control over metabolic flux

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Synthetic biology: new engineering rules for an emerging discipline

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Ethanol fermentation technologies from sugar and starch feedstocks

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CRISPR — a widespread system that provides acquired resistance against phages in bacteria and archaea

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Tuning genetic control through promoter engineering

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The Listeria transcriptional landscape from saprophytism to virulence

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Engineering BioBrick vectors from BioBrick parts

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Metabolic Engineering of a Pentose Metabolism Pathway in Ethanologenic Zymomonas mobilis

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The biology of Zymomonas

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Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs

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Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes

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Glycolytic strategy as a tradeoff between energy yield and protein cost

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Genetic improvement of Escherichia coli for ethanol production: chromosomal integration of Zymomonas mobilis genes encoding pyruvate decarboxylase and alcohol dehydrogenase II

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Modular optimization of multi-gene pathways for fatty acids production in E. coli

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Global transcription machinery engineering: A new approach for improving cellular phenotype

Alper, H. S., & Stephanopoulos, G. N. (2007) · Metabolic Engineering · doi:10.1016/j.ymben.2006.12.002 · Cited by 448 · see citing works

Enzyme clustering accelerates processing of intermediates through metabolic channeling

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Expanding metabolism for biosynthesis of nonnatural alcohols

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Computational protein design enables a novel one-carbon assimilation pathway

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Simple and efficient site-directed mutagenesis using two single-primer reactions in parallel to generate mutants for protein structure-function studies

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CMfinder—a covariance model based RNA motif finding algorithm

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Combining metabolic and protein engineering of a terpenoid biosynthetic pathway for overproduction and selectivity control

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Microfluidic high-throughput culturing of single cells for selection based on extracellular metabolite production or consumption

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Engineering central metabolic modules of Escherichia coli for improving β-carotene production

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High-Throughput Metabolic Engineering: Advances in Small-Molecule Screening and Selection

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DNA assembly for synthetic biology: from parts to pathways and beyond

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Ethanol production by Zymomonas mobilis

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A mutant Escherichia coli σ70 subunit of RNA polymerase with altered promoter specificity

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The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4

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Modular Engineering of l -Tyrosine Production in Escherichia coli

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Cell‐Free Metabolic Engineering: Production of Chemicals by Minimized Reaction Cascades

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Recent advances in systems metabolic engineering tools and strategies

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Golden Gate Cloning

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Creating small transcription activating RNAs

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Development of an arabinose-fermenting Zymomonas mobilis strain by metabolic pathway engineering

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Recent advances in DNA assembly technologies

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Zymomonas mobilis for Fuel Ethanol and Higher Value Products

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Zymomonas mobilis as a model system for production of biofuels and biochemicals

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In vitro reconstitution of mevalonate pathway and targeted engineering of farnesene overproduction in Escherichia coli

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High-throughput screening for industrial enzyme production hosts by droplet microfluidics.

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Zymomonas mobilis: a novel platform for future biorefineries

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CVTree3 Web Server for Whole-Genome-Based and Alignment-Free Prokaryotic Phylogeny and Taxonomy

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Small RNAs in Bacteria

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Spanning high-dimensional expression space using ribosome-binding site combinatorics

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Development of biosensors and their application in metabolic engineering

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Small regulatory non‐coding RNAs in bacteria: physiology and mechanistic aspects

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Identification of small RNAs in diverse bacterial species

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Ultrahigh‐Throughput FACS‐Based Screening for Directed Enzyme Evolution

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Metabolic engineering of Zymomonas mobilis for 2,3-butanediol production from lignocellulosic biomass sugars

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RBSDesigner : software for designing synthetic ribosome binding sites that yields a desired level of protein expression

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Inhibition of growth of Zymomonas mobilis by model compounds found in lignocellulosic hydrolysates

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Sequestration of a two-component response regulator by a riboswitch-regulated noncoding RNA

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d -Glucose Transport System of Zymomonas mobilis

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Modular pathway engineering of Bacillus subtilis for improved N-acetylglucosamine production

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Expanding metabolism for total biosynthesis of the nonnatural amino acid L-homoalanine

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Metabolic engineering of Escherichia coli for industrial production of glucosamine and N-acetylglucosamine

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Multivariate modular metabolic engineering for pathway and strain optimization

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Zymomonas Mobilis—Science and Industrial Application

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<i>Zymomonas mobilis</i>: an alternative ethanol producer

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Comparing the fermentation performance of Escherichia coli KO11, Saccharomyces cerevisiae 424A(LNH-ST) and Zymomonas mobilis AX101 for cellulosic ethanol production

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A pH-responsive riboregulatorPreprint

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Transcriptomic and metabolomic profiling of Zymomonas mobilis during aerobic and anaerobic fermentations

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Random Mutagenesis Methods for In Vitro Directed Enzyme Evolution

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Promoter and nucleotide sequences of the Zymomonas mobilis pyruvate decarboxylase

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Sequence and genetic organization of a Zymomonas mobilis gene cluster that encodes several enzymes of glucose metabolism

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Small RNAs, 5′ UTR elements and RNA-binding proteins in intracellular bacteria: impact on metabolism and virulence

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Influence of Aeration and of Pantothenate on Growth Yields of Zymomonas mobilis

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Strategies for terpenoid overproduction and new terpenoid discovery

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Systematic and evolutionary engineering of a xylose isomerase-based pathway in

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Random Mutagenesis Methods for In Vitro Directed Enzyme Evolution

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Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae

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Cofermentation of Glucose, Xylose, and Arabinose by Genomic DNA-lntegrated Xylose/Arabinose Fermenting Strain of Zymomonas mobilis AX101

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Cofermentation of Glucose, Xylose,and Arabinose by Genomic DNA-IntegratedXylose/Arabinose Fermenting Strainof Zymomonas mobilis AX101

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Development of a high-throughput method to evaluate the impact of inhibitory compounds from lignocellulosic hydrolysates on the growth of Zymomonas mobilis

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Enabling tools for high-throughput detection of metabolites: Metabolic engineering and directed evolution applications

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Dissecting a complex chemical stress: chemogenomic profiling of plant hydrolysates

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Combining Gal4p-mediated expression enhancement and directed evolution of isoprene synthase to improve isoprene production in Saccharomyces cerevisiae

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Transcriptome analysis of Zymomonas mobilis ZM4 reveals mechanisms of tolerance and detoxification of phenolic aldehyde inhibitors from lignocellulose pretreatment

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Improved genome annotation for Zymomonas mobilis

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Studies on cell-free metabolism: Ethanol production by extracts of Zymomonas mobilis

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Heterologous Expression and Extracellular Secretion of Cellulolytic Enzymes byZymomonas mobilis

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Ethanol Production by Zymomonas mobilis

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Sucrose utilization by Zymomonas mobilis: formation of a levan

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An overview of RNAs with regulatory functions in gram-positive bacteria

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Synthetic tolerance: three noncoding small RNAs, DsrA, ArcZ and RprA, acting supra-additively against acid stress

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Exploiting cell‐free systems: Implementation and debugging of a system of biotransformations

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A versatile framework for microbial engineering using synthetic non-coding RNAs

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The genome-scale metabolic network analysis of Zymomonas mobilis ZM4 explains physiological features and suggests ethanol and succinic acid production strategies

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Rational engineering of diol dehydratase enables 1,4-butanediol biosynthesis from xylose

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Unexpected versatility in bacterial riboswitches

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Sorbitol production by Zymomonas mobilis

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Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032

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Improved high-temperature ethanol production from sweet sorghum juice using Zymomonas mobilis overexpressing groESL genes

Kaewchana, A., Techaparin, A., Boonchot, N., Thanonkeo, P., & Klanrit, P. (2021) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-021-11686-0 · Cited by 14 · see citing works

Recent advances in high-throughput metabolic engineering: Generation of oligonucleotide-mediated genetic libraries

Li, Y., Mensah, E. O., Fordjour, E., Bai, J. Y., Yang, Y., & Bai, Z. (2022) · Biotechnology Advances · doi:10.1016/j.biotechadv.2022.107970 · Cited by 14 · see citing works

Lipid membrane remodeling and metabolic response during isobutanol and ethanol exposure in Zymomonas mobilis

Rivera Vazquez, J., Trujillo, E., Williams, J., She, F., Getahun, F., Callaghan, M. M., Coon, J. J., & Amador-Noguez, D. (2024) · Biotechnology for Biofuels and Bioproducts · doi:10.1186/s13068-023-02450-9 · Cited by 13 · see citing works

Construction and application of high-quality genome-scale metabolic model of Zymomonas mobilis to guide rational design of microbial cell factories

Wu, Y., Yuan, Q., Yang, Y., Liu, D., Yang, S., & Ma, H. (2023) · Synthetic and Systems Biotechnology · doi:10.1016/j.synbio.2023.07.001 · Cited by 13 · see citing works

Determination of Nucleotide Sequences within Promoter Regions Affecting Promoter Compatibility between Zymomonas mobilis and Escherichia coli

Song, H., Yang, Y., Li, H., Du, J. C., Hu, Z., Chen, Y., Yang, N., Mei, M., Xiong, Z., Tang, K., et al. (2022) · ACS Synthetic Biology · doi:10.1021/acssynbio.2c00187 · Cited by 13 · see citing works

Phenotypic and genomic analysis of Zymomonas mobilis ZM4 mutants with enhanced ethanol tolerance

Carreón-Rodríguez, O. E., Gutiérrez-Ríos, R.-M., Acosta, J. L., Martı́nez, A., & Cevallos, M. A. (2019) · Biotechnology Reports · doi:10.1016/j.btre.2019.e00328 · Cited by 13 · see citing works

Lignocellulosic Biomass for Bioethanol Production Through Microbes: Strategies to Improve Process Efficiency

Kumar, A., Singh, J., & Baskar, C. (2019) · Biofuel and biorefinery technologies · doi:10.1007/978-3-030-14463-0_14 · Cited by 13 · see citing works

Comparing three emerging industrial cell factories: Pseudomonas putida KT2440, Halomonas bluephagenesis TD01, and Zymomonas mobilis ZM4

Zhang, Y., Xue, C.-M., Chen, B.-T., Ouyang, P., & Chen, L. (2025) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2024.103255 · Cited by 12 · see citing works

Towards using bacterial microcompartments as a platform for spatial metabolic engineering in the industrially important and metabolically versatile Zymomonas mobilis

Doron, L., Raval, D., & Kerfeld, C. A. (2024) · Frontiers in Bioengineering and Biotechnology · doi:10.3389/fbioe.2024.1344260 · Cited by 11 · see citing works

Metabolic Profiling of Glucose-Fed Metabolically Active Resting Zymomonas mobilis Strains

Fuchino, K., Kalnenieks, U., Rutkis, R., Grūbe, M., & Bruheim, P. (2020) · Metabolites · doi:10.3390/metabo10030081 · Cited by 11 · see citing works

Metabolic engineering of an industrial bacterium Zymomonas mobilis for anaerobic l-serine production

Wang, Z., Wang, X., Yan, X., Yi, H., He, S., Zhang, H., Zhou, X., He, Q., & Yang, S. (2024) · Synthetic and Systems Biotechnology · doi:10.1016/j.synbio.2024.03.008 · Cited by 10 · see citing works

Performance of clostridium species and autochthonous bacteria from citrus wastewater under different carbon sources to produce biofuels

da Silva, D. C., Rodrigues, C. V., Marin, D. F. C., Lázaro, C. Z., Jacobus, A. P., Pires, L. O., & Maintinguer, S. I. (2023) · International Journal of Hydrogen Energy · doi:10.1016/j.ijhydene.2023.08.320 · Cited by 10 · see citing works

Development of a counterselectable system for rapid and efficient CRISPR-based genome engineering in Zymomonas mobilis

Zheng, Y., Fu, H., Chen, J., Li, J., Bian, Y., Hu, P., Lei, L., Liu, Y., Yang, J., & Peng, W. (2023) · Microbial Cell Factories · doi:10.1186/s12934-023-02217-9 · Cited by 10 · see citing works

High Productivity Ethanol from Solid-State Fermentation of Steam-Exploded Corn Stover Using Zymomonas mobilis by N2 Periodic Pulsation Process Intensification

Sun, L., Wang, L., & Chen, H. (2020) · Applied Biochemistry and Biotechnology · doi:10.1007/s12010-020-03318-6 · Cited by 10 · see citing works

Identification and Characterization of Genes Related to Ampicillin Antibiotic Resistance in Zymomonas mobilis

Geng, B., Huang, X., Wu, Y., He, Q., & Yang, S. (2022) · Antibiotics · doi:10.3390/antibiotics11111476 · Cited by 10 · see citing works

Zymomonas mobilis metabolism: Novel tools and targets for its rational engineering

Kalnenieks, U., Pappas, K. M., & Bettenbrock, K. (2020) · Advances in microbial physiology/Advances in Microbial Physiology · doi:10.1016/bs.ampbs.2020.08.001 · Cited by 10 · see citing works

Cold plasma pretreatment reinforces the lignocellulose-derived aldehyde inhibitors tolerance and bioethanol fermentability for Zymomonas mobilis

Yi, X., Yang, D. L., Xu, X., Wang, Y., Guo, Y., Zhang, M., Wang, Y., He, Y.-C., & Zhu, J. (2023) · Biotechnology for Biofuels and Bioproducts · doi:10.1186/s13068-023-02354-8 · Cited by 9 · see citing works

Heterologous expression of a glycosyl hydrolase and cellular reprogramming enable Zymomonas mobilis growth on cellobiose

Kurumbang, N. P., Vera, J. M., Hebert, A. S., Coon, J. J., & Landick, R. C. (2020) · PLoS ONE · doi:10.1371/journal.pone.0226235 · Cited by 9 · see citing works

Integration of corn ethanol and corn stover ethanol processes for improving xylose fermentation performance

Yu, J., Xu, Z., He, H., Chen, S., Wang, S., Yu, Y., & Jin, M. (2021) · Biomass Conversion and Biorefinery · doi:10.1007/s13399-021-01642-3 · Cited by 8 · see citing works

Metabolic Remodeling during Nitrogen Fixation in Zymomonas mobilis

Martien, J. I., Trujillo, E. A., Jacobson, T. B., Tatli, M., Hebert, A. S., Stevenson, D. M., Coon, J. J., & Amador‐Noguez, D. (2021) · mSystems · doi:10.1128/msystems.00987-21 · Cited by 7 · see citing works

Ethanologenesis and respiration in a pyruvate decarboxylase-deficient Zymomonas mobilis

Rutkis, R., Strazdiņa, I., Ļaša, Z., Bruheim, P., & Kalnenieks, U. (2021) · BMC Research Notes · doi:10.1186/s13104-021-05625-5 · Cited by 7 · see citing works

Understanding the metabolism of the tetralin degrader Sphingopyxis granuli strain TFA through genome-scale metabolic modelling

García‐Romero, I., Nogales, J., Dı́az, E., Santero, E., & Floriano, B. (2020) · Scientific Reports · doi:10.1038/s41598-020-65258-9 · Cited by 7 · see citing works

Enhancing Secretion of Endoglucanase in Zymomonas mobilis by Disturbing Peptidoglycan Synthesis

Liu, P., Wu, B., Chen, M., Dai, Y., Song, C., Sun, L., Huang, Y., Li, S., Hu, G., & He, M. (2021) · Applied and Environmental Microbiology · doi:10.1128/aem.02161-21 · Cited by 7 · see citing works

Development of a starch-fermenting Zymomonas mobilis strain for bioethanol production

Wei, Y., Li, J., Wang, C., Yang, J., & Shen, W. (2024) · Microbial Cell Factories · doi:10.1186/s12934-024-02539-2 · Cited by 6 · see citing works

In vitro characterization of a pAgo nuclease TtdAgo from Thermococcus thioreducens and evaluation of its effect in vivo

Tang, Y., Wang, F., Wang, Y., Wang, Y., Liu, Y., Chen, Z., Li, W., Yang, S., & Ma, L. (2023) · Frontiers in Bioengineering and Biotechnology · doi:10.3389/fbioe.2023.1142637 · Cited by 6 · see citing works

Transcription factor shapes chromosomal conformation and regulates gene expression in bacterial adaptation

Chen, M., Wu, B., Huang, Y., Wang, W., Zheng, Y., Shabbir, S., Liu, P., Dai, Y., Xia, M., Hu, G., et al. (2024) · Nucleic Acids Research · doi:10.1093/nar/gkae318 · Cited by 6 · see citing works

Applying a New REFINE Approach in Zymomonas mobilis Identifies Novel sRNAs That Confer Improved Stress Tolerance Phenotypes

Haning, K., Engels, S. M., Williams, P., Arnold, M., & Contreras, L. M. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.02987 · Cited by 6 · see citing works

Functional Gene Identification and Corresponding Tolerant Mechanism of High Furfural-Tolerant Zymomonas mobilis Strain F211

Hu, D., Wang, Z., He, M., & Ma, Y. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.736583 · Cited by 6 · see citing works

The escape of CRISPR-mediated gene editing inZymomonas mobilis

Chen, M., Huang, Y., Zheng, Y., Wu, B., & He, M. (2023) · FEMS Microbiology Letters · doi:10.1093/femsle/fnad006 · Cited by 6 · see citing works

Characterization and Application of the Sugar Transporter Zmo0293 from Zymomonas mobilis

Zhang, K., Zhang, W., Qin, M., Li, Y., & Wang, H. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24065888 · Cited by 6 · see citing works

Engineering strategies and tolerance mechanisms for robust d-lactate producer development of Zymomonas mobilis

Hu, M., Chen, Y., Geng, B., Yan, X., Wu, Y., Peng, Q., Chen, J., Hu, W., He, Q., & Yang, S. (2025) · Bioresource Technology · doi:10.1016/j.biortech.2025.133521 · Cited by 5 · see citing works

Zymomonas mobilis: a novel platform for future biorefineries

He, M., Wu, B., Qin, H., Ruan, Z., Tan, F., Wang, J., Shui, Z., Dai, L., Zhu, Q., Pan, K., et al. (2014) · Biotechnology for Biofuels · doi:10.1186/1754-6834-7-101 · Cited by 203 · see citing works

Comment on “Chlorin e6-polyvinylpyrrolidone mediated photodynamic therapy—A potential bladder sparing option for high risk non-muscle-invasive bladder cancer” by Lui Shiong Lee et al. [Photodiagn Photodyn Ther 2010;7:213–20]

Waidelich, R. M. (2010) · Photodiagnosis and Photodynamic Therapy · doi:10.1016/j.pdpdt.2010.09.004 · Cited by 2 · see citing works

Perspectives and new directions for bioprocess optimization using Zymomonas mobilis in the ethanol production

Todhanakasem, T., Wu, B., & Simeon, S. (2020) · World Journal of Microbiology and Biotechnology · doi:10.1007/s11274-020-02885-4 · Cited by 24 · see citing works

Zymomonas mobilis as an emerging biotechnological chassis for the production of industrially relevant compounds

Braga, A., Gomes, D., Rainha, J., Amorim, C., Cardoso, B. B., Gudiña, E. J., Silvério, S. C., Rodrigues, J. L., & Rodrigues, L. R. (2021) · Bioresources and Bioprocessing · doi:10.1186/s40643-021-00483-2 · Cited by 36 · see citing works

Zymomonas mobilis: bringing an ancient human tool into the genomic era

Boismier, E. C., Aboulnaga, E., & TerAvest, M. A. (2025) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2025.103257 · Cited by 9 · see citing works