The DOI matches its Crossref record; 30 of the 30 references it cites were found in a registry or an index.
Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors
Open accessOverview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Eng, J. K., McCormack, A. L., & Yates, J. R. (1994) · Journal of the American Society for Mass Spectrometry · doi:10.1016/1044-0305(94)80016-2 · Cited by 6,484
Functional organization of the yeast proteome by systematic analysis of protein complexes
Gavin, A.-C., Bösche, M., Krause, R., Grandi, P., Marzioch, M., Bauer, A., Schultz, J., Rick, J. M., Michon, A.-M., Cruciat, C.-M., et al. (2002) · Nature · doi:10.1038/415141a · Cited by 4,759
Large-scale analysis of the yeast proteome by multidimensional protein identification technology
Washburn, M. P., Wolters, D., & Yates, J. R. (2001) · Nature Biotechnology · doi:10.1038/85686 · Cited by 4,752
Self-citationSystematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
Ho, Y., Gruhler, A., Heilbut, A., Bader, G. D., Moore, L., Adams, S.-L., Millar, A., Taylor, P., Bennett, K., Boutilier, K., et al. (2002) · Nature · doi:10.1038/415180a · Cited by 3,601
A generic protein purification method for protein complex characterization and proteome exploration
Rigaut, G., Shevchenko, A., Rutz, B., Wilm, M., Mann, M., & Séraphin, B. (1999) · Nature Biotechnology · doi:10.1038/13732 · Cited by 2,707
Sivia, D. S. (1996) · Cited by 2,669
A Model for Random Sampling and Estimation of Relative Protein Abundance in Shotgun Proteomics
Liu, H., Sadygov, R. G., & Yates, J. R. (2004) · Analytical Chemistry · doi:10.1021/ac0498563 · Cited by 2,500
Comparative assessment of large-scale data sets of protein–protein interactions
von Mering, C., Krause, R., Snel, B., Cornell, M., Oliver, S. G., Fields, S., & Bork, P. (2002) · Nature · doi:10.1038/nature750 · Cited by 2,365
Ishihama, Y., Oda, Y., Tabata, T., Sato, T., Nagasu, T., Rappsilber, J., & Mann, M. (2005) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m500061-mcp200 · Cited by 2,055
Peng, J., Elias, J. E., Thoreen, C. C., Licklider, L. J., & Gygi, S. P. (2003) · Journal of Proteome Research · doi:10.1021/pr025556v · Cited by 1,647
Tabb, D. L., McDonald, W. H., & Yates, J. R. (2002) · Journal of Proteome Research · doi:10.1021/pr015504q · Cited by 1,367
A proteomic view of the Plasmodium falciparum life cycle
Florens, L., Washburn, M. P., Raine, J. D., Anthony, R. M., Grainger, M., Haynes, J. D., Moch, J. K., Muster, N., Sacci, J. B., Tabb, D. L., et al. (2002) · Nature · doi:10.1038/nature01107 · Cited by 1,308
Self-citationCarrozza, M. J., Li, B., Florens, L., Suganuma, T., Swanson, S. K., Lee, K. K., Shia, W.-J., Anderson, S., Yates, J., Washburn, M. P., et al. (2005) · Cell · doi:10.1016/j.cell.2005.10.023 · Cited by 1,294
Self-citationComparison of Label-free Methods for Quantifying Human Proteins by Shotgun Proteomics
Old, W. M., Meyer-Arendt, K., Aveline-Wolf, L., Pierce, K. G., Mendoza, A., Sevinsky, J. R., Resing, K. A., & Ahn, N. G. (2005) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m500084-mcp200 · Cited by 1,206
Statistical Analysis of Membrane Proteome Expression Changes in Saccharomyces cerevisiae
Zybailov, B., Mosley, A. L., Sardiu, M. E., Coleman, M. K., Florens, L., & Washburn, M. P. (2006) · Journal of Proteome Research · doi:10.1021/pr060161n · Cited by 1,029
Self-citationZybailov, B., Coleman, M. K., Florens, L., & Washburn, M. P. (2005) · Analytical Chemistry · doi:10.1021/ac050846r · Cited by 349
Self-citationMcDonald, W. H., Tabb, D. L., Sadygov, R. G., MacCoss, M. J., Venable, J., Graumann, J., Johnson, J. R., Cociorva, D., & Yates, J. R. (2004) · Rapid Communications in Mass Spectrometry · doi:10.1002/rcm.1603 · Cited by 345
Sato, S., Tomomori-Sato, C., Parmely, T. J., Florens, L., Zybailov, B., Swanson, S. K., Banks, C. A. S., Jin, J., Cai, Y., Washburn, M. P., et al. (2004) · Molecular Cell · doi:10.1016/j.molcel.2004.05.006 · Cited by 311
Self-citationMcDonald, W. H., Ohi, R., Miyamoto, D. T., Mitchison, T. J., & Yates, J. R. (2002) · International Journal of Mass Spectrometry · doi:10.1016/s1387-3806(02)00563-8 · Cited by 304
Molecular Regulation of Histone H3 Trimethylation by COMPASS and the Regulation of Gene Expression
Schneider, J., Wood, A., Lee, J.-S., Schuster, R., Dueker, J., Maguire, C., Swanson, S. K., Florens, L., Washburn, M. P., & Shilatifard, A. (2005) · Molecular Cell · doi:10.1016/j.molcel.2005.07.024 · Cited by 302
Self-citationProteomic Analysis by Multidimensional Protein Identification Technology
Florens, L., & Washburn, M. P. (2006) · New and Emerging Proteomic Techniques · doi:10.1385/1-59745-026-x:159 · Cited by 240
Self-citationCode Developments to Improve the Efficiency of Automated MS/MS Spectra Interpretation
Sadygov, R. G., Eng, J., Durr, E., Saraf, A., McDonald, H., MacCoss, M. J., & Yates, J. R. (2002) · Journal of Proteome Research · doi:10.1021/pr015514r · Cited by 204
Cluster Analysis of Mass Spectrometry Data Reveals a Novel Component of SAGA
Powell, D. W., Weaver, C. M., Jennings, J. L., McAfee, K. J., He, Y., Weil, P. A., & Link, A. J. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.24.16.7249-7259.2004 · Cited by 152
Applicability of Tandem Affinity Purification MudPIT to Pathway Proteomics in Yeast
Graumann, J., Dunipace, L., Seol, J. H., McDonald, W. H., Yates, J. R., Wold, B. J., & Deshaies, R. J. (2003) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m300099-mcp200 · Cited by 142
Stable incorporation of sequence specific repressors Ash1 and Ume6 into the Rpd3L complex
Carrozza, M. J., Florens, L. A., Swanson, S. K., Shia, W.-J., Anderson, S., Yates, J. R., Washburn, M. P., & Workman, J. L. (2005) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/j.bbaexp.2005.09.005 · Cited by 134
Self-citationProchasson, P., Florens, L. A., Swanson, S. K., Washburn, M. P., & Workman, J. L. (2005) · Genes & Development · doi:10.1101/gad.1341105 · Cited by 111
Self-citationDifferential Proteomics via Probabilistic Peptide Identification Scores
Colinge, J., Chiappe, D., Lagache, S. B., Moniatte, M., & Bougueleret, L. (2004) · Analytical Chemistry · doi:10.1021/ac0488513 · Cited by 110
In vitro and in silico processes to identify differentially expressed proteins
Allet, N., Barrillat, N., Baussant, T., Boiteau, C., Botti, P., Bougueleret, L., Budin, N., Canet, D., Carraud, S., Chiappe, D., et al. (2004) · PROTEOMICS · doi:10.1002/pmic.200300840 · Cited by 65
Guidelines for the Routine Application of the Peptide Hits Technique
Gao, J., Friedrichs, M. S., Dongré, A. R., & Opiteck, G. J. (2005) · Journal of the American Society for Mass Spectrometry · doi:10.1016/j.jasms.2004.12.002 · Cited by 62
Xie, H., & Griffin, T. J. (2006) · Journal of Proteome Research · doi:10.1021/pr050472i · Cited by 44
Cited by
IMG: the integrated microbial genomes database and comparative analysis system
Markowitz, V. M., Chen, I.-M. A., Palaniappan, K., Chu, K., Szeto, E., Grechkin, Y., Ratner, A., Jacob, B., Huang, J., Williams, P., et al. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr1044 · Cited by 1,311
Neuronal Activity Promotes Glioma Growth through Neuroligin-3 Secretion
Venkatesh, H. S., Johung, T. B., Caretti, V., Noll, A., Tang, Y., Nagaraja, S., Gibson, E. M., Mount, C. W., Polepalli, J., Mitra, S. S., et al. (2015) · Cell · doi:10.1016/j.cell.2015.04.012 · Cited by 963
Mass Spectrometry-Based Label-Free Quantitative Proteomics
Zhu, W., Smith, J. W., & Huang, C.-M. (2010) · Journal of Biomedicine and Biotechnology · doi:10.1155/2010/840518 · Cited by 629
Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation
Petersen, J. M., Kemper, A., Gruber-Vodicka, H., Cardini, U., van der Geest, M., Kleiner, M., Bulgheresi, S., Mußmann, M., Herbold, C., Seah, B. K. B., et al. (2016) · Nature Microbiology · doi:10.1038/nmicrobiol.2016.195 · Cited by 444
The mammalian ribo-interactome reveals ribosome functional diversity and heterogeneity
Simsek, D., Tiu, G. C., Flynn, R. A., Byeon, G. W., Leppek, K., Xu, A. F., Chang, H. Y., & Barna, M. (2017) · Cell · doi:10.1016/j.cell.2017.05.022 · Cited by 439
Metadata
- Authors
- FLORENS, L., CAROZZA, M., SWANSON, S., FOURNIER, M., COLEMAN, M., WORKMAN, J., & WASHBURN, M.
- Venue
- Methods
- Publisher
- Elsevier BV
- Published
- 2006-12
- Volume
- 40
- Issue
- 4
- Pages
- 303-311
- ISSN
- 1046-2023 (ISSN-L)
- OpenAlex
- W2070372183
- Cited by
- 344
- References
- 30
- FWCI
- 6.66
- Type
- journal article
- Language
- en
- Open access
- green
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
