The DOI matches its Crossref record; 179 of the 180 references it cites were found in a registry or an index.
Chapter 4 β‐Globin Regulation and Long‐Range Interactions
Abstract
Transcriptional activation in higher eukaryotes frequently involves the long-range action of a number of regulatory DNA elements. One of the main questions in transcriptional regulation is how cis-regulatory elements communicate with the promoter of a gene over large distances. There has been a lively debate in recent years whether this communication takes place via a noncontact mechanism (linking, tracking) or via a contact mechanism (looping). The demonstration that the major regulatory element of the beta-globin locus, the locus control region (LCR), is in close proximity to the active beta-globin genes validates the contact model for long-range activation. Here, we will review the beta-globin locus as a model system to study long-range activation, briefly describe the different models for long-range activation, and summarize the recent findings that the LCR of the beta-globin locus is in close proximity to the active promoters. Although it is now firmly established that looping takes place within the beta-globin locus (and other loci), it is not clear how these long-range contacts are established and what the precise role is of the LCR. We will argue that the main action of the LCR takes place at the promoter and open reading frame of the gene itself and we will discuss key rate-limiting steps in transcriptional activation and the possible mechanisms by which they are influenced by the LCR.
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“Central to the mechanism of globin gene switching is the exclusive interaction between the LCR and globin gene promoters at distinct developmental stages (Carter et al., 2002; Palstra et al., 2008; Tolhuis et al., 2002).”
From Reactivation of developmentally silenced globin genes by forced chromatin looping (2014) · cites this paper as Palstra et al., 2008
Citations
Cites
Capturing Chromosome Conformation
Dekker, J., Rippe, K., Dekker, M., & Kleckner, N. (2002) · Science · doi:10.1126/science.1067799 · Cited by 3,652
The Role of Chromatin during Transcription
Li, B., Carey, M., & Workman, J. L. (2007) · Cell · doi:10.1016/j.cell.2007.01.015 · Cited by 3,503
Position-independent, high-level expression of the human β-globin gene in transgenic mice
Grosveld, F. G., van Assendelft, G. B., Greaves, D. R., & Kollias, G. A. (1987) · Cell · doi:10.1016/0092-8674(87)90584-8 · Cited by 1,908
Weintraub, H., & Groudine, M. (1976) · Science · doi:10.1126/science.948749 · Cited by 1,809
Looping and Interaction between Hypersensitive Sites in the Active β-globin Locus
Tolhuis, B., Palstra, R.-J., Splinter, E., Grosveld, F., & de Laat, W. (2002) · Molecular Cell · doi:10.1016/s1097-2765(02)00781-5 · Cited by 1,344
Self-citationDiffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory
Berg, O. G., Winter, R. B., & von Hippel, P. H. (1981) · Biochemistry · doi:10.1021/bi00527a028 · Cited by 1,299
Transcriptional activation by recruitment
Ptashne, M., & Gann, A. (1997) · Nature · doi:10.1038/386569a0 · Cited by 1,158
p300/CBP proteins: HATs for transcriptional bridges and scaffolds
Chan, H. M., & La Thangue, N. B. (2001) · Journal of Cell Science · doi:10.1242/jcs.114.13.2363 · Cited by 1,092
Active genes dynamically colocalize to shared sites of ongoing transcription
Osborne, C. S., Chakalova, L., Brown, K. E., Carter, D., Horton, A., Debrand, E., Goyenechea, B., Mitchell, J. A., Lopes, S. M. C. D. S., Reik, W., et al. (2004) · Nature Genetics · doi:10.1038/ng1423 · Cited by 1,080
Development of hematopoietic stem cell activity in the mouse embryo
Müller, A. M., Medvinsky, A., Strouboulis, J., Grosveld, F. G., & Dzierzakt, E. (1994) · Immunity · doi:10.1016/1074-7613(94)90081-7 · Cited by 901
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Iarovaia, O. V., Ulianov, S. V., Ioudinkova, E. S., & Razin, S. V. (2022) · Biochemistry (Moscow) · doi:10.1134/s0006297922090140 · Cited by 2
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Maire, P. (2015) · Bulletin de l Académie Nationale de Médecine · doi:10.1016/s0001-4079(19)31002-7 · Cited by 2
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Chatterjee, S., & Abel, T. G. (2017) · Elsevier eBooks · doi:10.1016/b978-0-12-809324-5.21107-3 · Cited by 4
Itaya, K., Chayahara, K., Hirai, T., Minbuta, T., Uchikawa, T., Tanaka, T., Masaki, S., Kuroda, K., & Ono, M. (2011) · Genes to Cells · doi:10.1111/j.1365-2443.2011.01486.x · Cited by 2
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Abel, T. G., Basu, B., & Chatterjee, S. (2024) · Elsevier eBooks · doi:10.1016/b978-0-443-15754-7.00076-6 · Cited by 1
Novel Single Cell Methods to Identify the Genetic Composition at a Single Nuclear Structure
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Iudinkova, E. S., Bunina, D., Ulianov, S. V., Gavrilov, A. A., & Razin, S. V. (2011) · Molecular Biology · doi:10.1134/s0026893311030216
Berberich‐Siebelt, F., Avots, A., & Serfling, E. (2011) · European Journal of Immunology · doi:10.1002/eji.201190016
Chayahara, K., Itaya, K., & Ono, M. (2011) · Gene · doi:10.1016/j.gene.2011.06.032
Minbuta, T., & Ono, M. (2011) · Biological and Pharmaceutical Bulletin · doi:10.1248/bpb.34.1710
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Hager, G. L., Stavreva, D. A., & Voss, T. C. (2009) · Elsevier eBooks · doi:10.1016/b978-008088783-8.00040-1
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de Nooijer, S. (2010) · doi:10.18174/151752
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Shearstone, J. R. (2011) · The Journal of the American Medical Association (JAMA) Network (American Medical Association) · doi:10.13028/hs36-k802
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Genetic compensation in podocalyxin-like mutants during zebrafish liver developmentPreprint
Ross, A. N., Miscik, N. M., Kalasekar, S. M., Harris, J. D., Tran, L., Saxena, A., Baker, S. A., & Evason, K. J. (2025) · eLife · doi:10.7554/elife.106460
Genetic compensation in podocalyxin-like mutants during zebrafish liver developmentPreprint
Ross, A. N., Miscik, N. M., Kalasekar, S. M., Harris, J. D., Tran, L., Saxena, A., Baker, S. A., & Evason, K. J. (2025) · eLife · doi:10.7554/elife.106460.1
KSHV TR deletion episomes uncover enhancer–promoter dynamics in gene regulation
Inagaki, T., Kumar, A., Wang, K.-H., Komaki, S., Espera, J. M., Bautista, C. S. A., Nakajima, K., Izumiya, C., & Izumiya, Y. (2025) · PLoS Pathogens · doi:10.1371/journal.ppat.1013061
Nora, E. P. (2011) · theses.fr (ABES) · doi:10.70675/c8703557zdd89z4922z8f30z9920f262596c
Novel approaches to thalassaemia gene therapy
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Metadata
- Authors
- Palstra, R., de Laat, W., & Grosveld, F.
- Affiliations
- Erasmus MC (NL)
- Venue
- Advances in genetics
- Publisher
- Elsevier
- Published
- 2008
- Volume
- 61
- Pages
- 107-142
- ISSN
- 0065-2660 (ISSN-L)
- OpenAlex
- W1564263074
- Cited by
- 131
- References
- 180
- Citations by year
- 2026: 1 · 2025: 5 · 2024: 3 · 2023: 3 · 2022: 5 · 2021: 3 · 2020: 4 · 2019: 2 · 2018: 2 · 2017: 7 · 2016: 4 · 2015: 6 · 2014: 8 · 2013: 8 · 2012: 15
- FWCI
- 23.68
- Type
- book chapter
- Language
- en
- Open access
- closed
- Locations
- Advances in genetics (publishedVersion)
- PubMed (publishedVersion)
- EUR Research Repository (Erasmus University Rotterdam) (publishedVersion)
- EUR Research Repository (Erasmus University Rotterdam) (submittedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Health Sciences › Medicine › Genetics (clinical) › Hemoglobinopathies and Related Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Associations and Epidemiology
- Keywords
- beta-globin locus, locus control region, chromatin looping, cis-regulatory elements, transcriptional regulation, gene expression regulation
- MeSH terms
- Animals, Chromatin, Epistasis, Genetic, Gene Expression Regulation, Globins, Humans, Models, Biological, Promoter Regions, Genetic, Transcription, Genetic, Locus Control Region, Gene Order
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