The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
PQS: a protein quaternary structure file server
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Citations
Cites
Blaber, M., Lindstrom, J. D., Gassner, N., Xu, J., Heinz, D. W., & Matthews, B. W. (1993) · Biochemistry · doi:10.1021/bi00093a013 · Cited by 93
Cited by
Berman, H. M. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.1.235 · Cited by 40,196
Luscombe, N. M. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.13.2860 · Cited by 981
Structure-based prediction of protein–protein interactions on a genome-wide scale
Zhang, Q. C., Petrey, D., Deng, L., Qiang, L., Shi, Y., Thu, C. A., Bisikirska, B., Lefebvre, C., Accili, D., Hunter, T., et al. (2012) · Nature · doi:10.1038/nature11503 · Cited by 723
Paircoil2: improved prediction of coiled coils from sequence.
McDonnell, A. V., Jiang, T., Keating, A. E., & Berger, B. (2006) · Bioinformatics · doi:10.1093/bioinformatics/bti797 · Cited by 424
Walshaw, J., & Woolfson, D. N. (2001) · Journal of Molecular Biology · doi:10.1006/jmbi.2001.4545 · Cited by 357
Integrating diverse data for structure determination of macromolecular assemblies
Alber, F., Förster, F., Korkin, D., Topf, M., & Sali, A. (2008) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.77.060407.135530 · Cited by 206
Protein interface conservation across structure space
Zhang, Q. C., Petrey, D., Norel, R., & Honig, B. H. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1005894107 · Cited by 156
Trigg, J., Gutwin, K., Keating, A. E., & Berger, B. (2011) · PLoS One · doi:10.1371/journal.pone.0023519 · Cited by 91
“Structure-derived training examples resulted from application of SOCKET [15] to a version of the PQS database [23] downloaded on September 3, 2008.”
MethodM-TASSER: An Algorithm for Protein Quaternary Structure Prediction
Chen, H., & Skolnick, J. (2008) · Biophysical Journal · doi:10.1529/biophysj.107.114280 · Cited by 68
ClusPro-DC: dimer classification by the Cluspro server for protein–protein docking
Yueh, C., Hall, D. R., Xia, B., Padhorny, D., Kozakov, D., & Vajda, S. (2017) · Journal of Molecular Biology · doi:10.1016/j.jmb.2016.10.019 · Cited by 53
“One of the first methods published in this class was Protein Quaternary Structure (PQS), which used an empirical scoring function based on several contributions such as interface contact area, number of interfacial buried residues, salt bridges, disulfide bonds, and the solvation energy of quaternary structure formati…”
Li, S., Wu, S., Wang, L., Li, F., Jiang, H., & Bai, F. (2022) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2022.102344 · Cited by 42
Rapid and accurate prediction of protein homo-oligomer symmetry using Seq2Symm
Kshirsagar, M., Meller, A., Humphreys, I. R., Sledzieski, S., Xu, Y., Dodhia, R., Horvitz, E., Berger, B., Bowman, G. R., Ferres, J. L., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-57148-3 · Cited by 23
Feng, S.-H., Xia, C.-Q., & Shen, H.-B. (2022) · Bioinformatics · doi:10.1093/bioinformatics/btab744 · Cited by 21
The Basis for Target‐Based Virtual Screening: Protein Structures
Cole, J. C., Korb, O., Olsson, T. S. G., & Liebeschuetz, J. (2011) · Methods and principles in medicinal chemistry · doi:10.1002/9783527633326.ch4 · Cited by 9
A structural database of chain–chain and domain–domain interfaces of proteins
Sen, N., & Madhusudhan, M. S. (2022) · Protein Science · doi:10.1002/pro.4406 · Cited by 4
Metadata
- Authors
- Henrick, K.
- Venue
- Trends in Biochemical Sciences
- Publisher
- Elsevier BV
- Published
- 1998-09-01
- Volume
- 23
- Issue
- 9
- Pages
- 358-361
- ISSN
- 0968-0004 (ISSN-L)
- OpenAlex
- W1977845138
- Cited by
- 537
- References
- 1
- FWCI
- 4.85
- Type
- journal article
- Language
- en
- Open access
- closed
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Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
