Structural and Functional Consequences of Three Cancer-Associated Mutations of the Oncogenic Phosphatase SHP2
Open accessAbstract
The proto-oncogene PTPN11 encodes a cytoplasmic protein tyrosine phosphatase, SHP2, which is required for normal development and sustained activation of the Ras-MAPK signaling pathway. Germline mutations in SHP2 cause developmental disorders, and somatic mutations have been identified in childhood and adult cancers and drive leukemia in mice. Despite our knowledge of the PTPN11 variations associated with pathology, the structural and functional consequences of many disease-associated mutants remain poorly understood. Here, we combine X-ray crystallography, small-angle X-ray scattering, and biochemistry to elucidate structural and mechanistic features of three cancer-associated SHP2 variants harboring single point mutations within the N-SH2:PTP interdomain autoinhibitory interface. Our findings directly compare the impact of each mutation on autoinhibition of the phosphatase and advance the development of structure-guided and mutation-specific SHP2 therapies.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
SHP2 contains two SH2 domains (N-SH2 and C-SH2) at N-terminal, a catalytic PTP domain, and two phosphorylable tyrosine residues (Tyr542 and Tyr580) at C-terminal.
“Structurally, SHP2 contains two SH2 domains (N-SH2 and C-SH2) at the N-terminal, a catalytic PTP domain, and two phosphorylable tyrosine residues (Tyr542 and Tyr580) at the C-terminal.”
From Recent advances in targeting the “undruggable” proteins: from drug discovery to clinical trials (2023) · cites this paper as [260]
SHP2 is involved in regulation of multiple signaling pathways, including RAS-MAPK, PI3K-AKT and JAK-STAT.
“As protein tyrosine phosphorylation plays an essential role in multiple intracellular processes, SHP2 is involved in the regulation of multiple signaling pathways, including those involved in cancer cells, such as RAS-MAPK, PI3K-AKT and JAK-STAT pathways.”
From Recent advances in targeting the “undruggable” proteins: from drug discovery to clinical trials (2023) · cites this paper as [260]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Features and development of Coot
Emsley, P., Lohkamp, B., Scott, W. G., & Cowtan, K. D. (2010) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444910007493 · Cited by 27,510 · see citing works
Kabsch, W. (2010) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444909047337 · Cited by 16,463 · see citing works
Svergun, D. I. (1992) · Journal of Applied Crystallography · doi:10.1107/s0021889892001663 · Cited by 3,709 · see citing works
Svergun, D. I., Barberato, C., & Koch, M. (1995) · Journal of Applied Crystallography · doi:10.1107/s0021889895007047 · Cited by 3,388 · see citing works
Discovery and saturation analysis of cancer genes across 21 tumour types
Lawrence, M. S., Stojanov, P., Mermel, C. H., Robinson, J. T., Garraway, L. A., Golub, T. R., Meyerson, M., Gabriel, S. B., Lander, E. S., & Getz, G. (2014) · Nature · doi:10.1038/nature12912 · Cited by 3,096 · cited 2× · see citing works
“associated SHP2 (1-525) mutants were generated using site directed mutagenesis (QuikChange”
MethodPRIMUS: a Windows PC-based system for small-angle scattering data analysis
Konarev, P. V., Волков, В. В., Sokolova, A. V., Koch, M. H. J., & Svergun, D. I. (2003) · Journal of Applied Crystallography · doi:10.1107/s0021889803012779 · Cited by 2,850 · see citing works
New developments in the ATSAS program package for small-angle scattering data analysis
Petoukhov, M. V., Franke, D., Shkumatov, A. V., Tria, G., Kikhney, A., Gajda, M. J., Gorba, C., Mertens, H. D. T., Konarev, P. V., & Svergun, D. I. (2012) · Journal of Applied Crystallography · doi:10.1107/s0021889812007662 · Cited by 1,907 · see citing works
Mutations in PTPN11, encoding the protein tyrosine phosphatase SHP-2, cause Noonan syndrome
Tartaglia, M., Mehler, E. L., Goldberg, R. B., Zampino, G., Brunner, H. G., Kremer, H., van der Burgt, I., Crosby, A. H., Ion, A., Jeffery, S., et al. (2001) · Nature Genetics · doi:10.1038/ng772 · Cited by 1,736 · see citing works
The ‘Shp'ing news: SH2 domain-containing tyrosine phosphatases in cell signaling
Neel, B. G., Gu, H., & Pao, L. (2003) · Trends in Biochemical Sciences · doi:10.1016/s0968-0004(03)00091-4 · Cited by 1,249 · see citing works
Tartaglia, M., Niemeyer, C. M., Fragale, A., Song, X., Buechner, J., Jung, A., Hählen, K., Hasle, H., Licht, J. D., & Gelb, B. D. (2003) · Nature Genetics · doi:10.1038/ng1156 · Cited by 1,033 · see citing works
Crystal Structure of the Tyrosine Phosphatase SHP-2
Hof, P., Pluskey, S., Dhe‐Paganon, S., Eck, M. J., & Shoelson, S. E. (1998) · Cell · doi:10.1016/s0092-8674(00)80938-1 · Cited by 996 · see citing works
A Grb2-associated docking protein in EGF- and insulin-receptor signalling
Holgado-Madruga, M., Emlet, D. R., Moscatello, D. K., Godwin, A. K., & Wong, A. J. (1996) · Nature · doi:10.1038/379560a0 · Cited by 677 · see citing works
Bentires-Alj, M., Paez, J. G., David, F. S., Keilhack, H., Halmos, B., Naoki, K., Maris, J. M., Richardson, A., Bardelli, A., Sugarbaker, D. J., et al. (2004) · Cancer Research · doi:10.1158/0008-5472.can-04-1923 · Cited by 509 · see citing works
Araki, T., Mohi, G., Ismat, F. A., Bronson, R. T., Williams, I. R., Kutok, J. L., Yang, W., Pao, L. I., Gilliland, D. G., Epstein, J. A., et al. (2004) · Nature Medicine · doi:10.1038/nm1084 · Cited by 415 · see citing works
The insulin receptor substrate 1 associates with the SH2-containing phosphotyrosine phosphatase Syp
Kuhné, M. R., Pawson, T. J., Lienhard, G. E., & Feng, G. (1993) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)50220-4 · Cited by 380 · see citing works
Noguchi, T., Matozaki, T., Horita, K., Fujioka, Y., & Kasuga, M. (1994) · Molecular and Cellular Biology · doi:10.1128/mcb.14.10.6674 · Cited by 376 · see citing works
Hadari, Y., Kouhara, H., Lax, I., & Schlessinger, J. (1998) · Molecular and Cellular Biology · doi:10.1128/mcb.18.7.3966 · Cited by 333 · see citing works
Diverse Biochemical Properties of Shp2 Mutants
Keilhack, H., David, F. S., McGregor, M. J., Cantley, L. C., & Neel, B. G. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m504699200 · Cited by 299 · see citing works
Potent Stimulation of SH-PTP2 Phosphatase Activity by Simultaneous Occupancy of Both SH2 Domains
Pluskey, S., Wandless, T. J., Walsh, C. T., & Shoelson, S. E. (1995) · Journal of Biological Chemistry · doi:10.1074/jbc.270.7.2897 · Cited by 285 · see citing works
Mohi, G., Williams, I. R., Dearolf, C. R., Chan, G., Kutok, J. L., Cohen, S. L., Morgan, K. J., Boulton, C. L., Shigematsu, H., Keilhack, H., et al. (2005) · Cancer Cell · doi:10.1016/j.ccr.2005.01.010 · Cited by 274 · see citing works
Sugimoto, S., Wandless, T. J., Shoelson, S. E., Neel, B. G., & Walsh, C. T. (1994) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)36874-6 · Cited by 213 · see citing works
Kazlauskas, A., Feng, G., Pawson, T. J., & Valius, M. (1993) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.90.15.6939 · Cited by 207 · see citing works
Impact and progress in small and wide angle X-ray scattering (SAXS and WAXS)
Graewert, M. A., & Svergun, D. I. (2013) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2013.06.007 · Cited by 190 · see citing works
Gee, K. R., Sun, W., Bhalgat, M. K., et al. (1999) · Analytical Biochemistry · doi:10.1006/abio.1999.4202 · Cited by 180 · see citing works
Regulation of the Mitogen-activated Protein Kinase Signaling Pathway by SHP2
Cunnick, J. M., Meng, S., Ren, Y., Desponts, C., Wang, H., Djeu, J. Y., & Wu, J. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m110547200 · Cited by 162 · see citing works
Functional analysis of leukemia-associated PTPN11 mutations in primary hematopoietic cells
Schubbert, S., Lieuw, K. H., Rowe, S. L., Lee, C. M., Li, X., Loh, M. L., Clapp, D. W., & Shannon, K. (2005) · Blood · doi:10.1182/blood-2004-11-4207 · Cited by 148 · see citing works
Overexpression of Shp2 tyrosine phosphatase is implicated in leukemogenesis in adult human leukemia
Xu, R., Yu, Y., Zheng, S. S., Zhao, X., Dong, Q., He, Z., Liang, Y., Lu, Q., Fang, Y., Gan, X., et al. (2005) · Blood · doi:10.1182/blood-2004-10-4057 · Cited by 121 · see citing works
Self-citationLoh, M. L., Reynolds, M. G., Vattikuti, S., Gerbing, R. B., Alonzo, T. A., Carlson, E. J., Cheng, J. W., Lee, C. M., Lange, B. J., & Meshinchi, S. (2004) · Leukemia · doi:10.1038/sj.leu.2403492 · Cited by 120 · see citing works
Noguchi, T., Matozaki, T., Horita, K., et al. (1994) · Molecular and Cellular Biology · doi:10.1128/mcb.14.10.6674-6682.1994 · Cited by 114 · see citing works
Molecular Basis of Gain-of-Function LEOPARD Syndrome-Associated SHP2 Mutations
Yu, Z.-H., Zhang, R.-Y., Walls, C. D., Chen, L., Zhang, S., Wu, L., Liu, S., & Zhang, Z.-Y. (2014) · Biochemistry · doi:10.1021/bi5002695 · Cited by 87 · see citing works
Qiu, W., Wang, X., Romanov, V., Hutchinson, A., Lin, A., Ruzanov, M., Battaile, K. P., PAI, E. F., Neel, B. G., & Chirgadze, N. Y. (2014) · BMC Structural Biology · doi:10.1186/1472-6807-14-10 · Cited by 85 · see citing works
Yoshida, N., Omoto, Y., Inoue, A., Eguchi, H., Kobayashi, Y., Kurosumi, M., Saji, S., Suemasu, K., Okazaki, T., Nakachi, K., et al. (2004) · Cancer Science · doi:10.1111/j.1349-7006.2004.tb03239.x · Cited by 78 · see citing works
PTPN11, RAS and FLT3 mutations in childhood acute lymphoblastic leukemia
Yamamoto, T., Isomura, M., Xu, Y., Liang, J. B., Yagasaki, H., Kamachi, Y., Kudo, K., Kiyoi, H., Naoe, T., & Kojma, S. (2006) · Leukemia Research · doi:10.1016/j.leukres.2006.02.004 · Cited by 70 · see citing works
Wang, J., Zuo, X., Yu, P., et al. (2009) · Journal of Molecular Biology · doi:10.1016/j.jmb.2009.08.001 · Cited by 70 · see citing works
Hirai, M., Arai, S., Iwase, H., et al. (1998) · The Journal of Physical Chemistry B · doi:10.1021/jp9713367 · Cited by 45 · see citing works
Darian, E., Guvench, O., Yu, B., et al. (2011) · Proteins Structure Function and Bioinformatics · doi:10.1002/prot.22984 · Cited by 37 · see citing works
High resolution pair-distance distribution function P(r) of protein solutions
Hong, X., & Hao, Q. (2009) · Applied Physics Letters · doi:10.1063/1.3089360 · Cited by 14 · see citing works
Flagged first, then by citations
Research works printed but not linked: 1
- [23]Bricogne G Blanc E Brandl M Flensburg C Keller P Paciorek W Roversi P Sharff A Smart OS Vonrhein C Womack TO BUSTER version x.y.z 2011 Global Phasing Ltd. Cambridge, United Kingdom
Cited by
Sorted by citations
Recent advances in targeting the “undruggable” proteins: from drug discovery to clinical trials
Xie, X., Yu, T., Li, X., Zhang, N., Foster, L. J., Peng, C., Huang, W., & He, G. (2023) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-023-01589-z · Cited by 396 · see citing works
Identification of TNO155, an Allosteric SHP2 Inhibitor for the Treatment of Cancer
LaMarche, M. J., Acker, M., Argintaru, A., Bauer, D., Boisclair, J., Chan, H., Chen, C. H.-T., Chen, Y.-N., Chen, Z., Deng, Z., et al. (2020) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.0c01170 · Cited by 231 · see citing works
Self-citationLaRochelle, J. R., Fodor, M., Vemulapalli, V., Mohseni, M., Wang, P., Stams, T., LaMarche, M. J., Chopra, R., Acker, M. G., & Blacklow, S. C. (2018) · Nature Communications · doi:10.1038/s41467-018-06823-9 · Cited by 167 · see citing works
Self-citationMechanism of activating mutations and allosteric drug inhibition of the phosphatase SHP2
Pádua, R. A. P., Sun, Y., Marko, I., Pitsawong, W., Stiller, J. B., Otten, R., & Kern, D. (2018) · Nature Communications · doi:10.1038/s41467-018-06814-w · Cited by 133 · see citing works
Kerr, D. L., Haderk, F., & Bivona, T. G. (2021) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2020.11.007 · Cited by 124 · see citing works
A comprehensive review of SHP2 and its role in cancer
Asmamaw, M. D., Shi, X.-J., Zhang, L.-R., & Liu, H.-M. (2022) · Cellular Oncology · doi:10.1007/s13402-022-00698-1 · Cited by 119 · see citing works
6-Amino-3-methylpyrimidinones as Potent, Selective, and Orally Efficacious SHP2 Inhibitors
Sarver, P., Acker, M., Bagdanoff, J. T., Chen, Z., Chen, Y.-N., Chan, H., Firestone, B., Fodor, M., Fortanet, J., Hao, H., et al. (2019) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.8b01726 · Cited by 87 · see citing works
Self-citationTargeted Degradation of the Oncogenic Phosphatase SHP2
Vemulapalli, V., Donovan, K. A., Seegar, T. C. M., Rogers, J. M., Bae, M., Lumpkin, R. J., Cao, R., Henke, M. T., Ray, S. S., Fischer, E. S., et al. (2021) · Biochemistry · doi:10.1021/acs.biochem.1c00377 · Cited by 43 · see citing works
Self-citationRehman, A. U., Rafiq, H., Rahman, M. U., Li, J., Liu, H., Luo, S., Arshad, T., Wadood, A., & Chen, H.-F. (2019) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.9b00353 · Cited by 40 · see citing works
- Authors
- LaRochelle, J. R., Fodor, M., Xu, X., Durzynska, I., Fan, L., Stams, T., Chan, H. M., LaMarche, M. J., Chopra, R., Wang, P., Fortin, P. D., Acker, M. G., & Blacklow, S. C.
- Affiliations
- Harvard University (US)
- Frederick National Laboratory for Cancer Research (US)
- Novartis Institutes for BioMedical Research (CH)
- Corresponding author
- Blacklow, Stephen C.
- ORCID
- Venue
- Biochemistry
- Publisher
- American Chemical Society (ACS)
- Published
- 2016-04-11
- Volume
- 55
- Issue
- 15
- Pages
- 2269-2277
- ISSN
- 0006-2960 (ISSN-L)
- 1520-4995
- PMC
- PMC4900891
- OpenAlex
- W2317996983
- Cited by
- 70
- References
- 38
- Citations by year
- 2026: 5 · 2025: 9 · 2024: 4 · 2023: 8 · 2022: 9 · 2021: 11 · 2020: 6 · 2019: 6 · 2018: 7 · 2017: 5
- FWCI
- 3.29
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Biochemistry (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) (submittedVersion)
- The Novartis Repository (Novartis) (submittedVersion)
- Funders
- Novartis
- American Cancer Society (128126)
- National Institute of General Medical Sciences (P50 GM107618-01A1)
- William Lawrence and Blanche Hughes Foundation
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Tyrosine Phosphatases
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
- Physical Sciences › Materials Science › Materials Chemistry › Enzyme Structure and Function
- Keywords
- SHP2, PTPN11, cancer-associated mutations, protein tyrosine phosphatase, autoinhibition, RAS/MAPK pathway, structure-based drug design, leukemia, germline mutations, somatic mutations
- MeSH terms
- Proto-Oncogene Mas, Cell Transformation, Neoplastic, Enzyme Activation, Humans, Leukemia, Ligands, Models, Molecular, Neoplasms, Oncogenes, Structure-Activity Relationship, Point Mutation, Protein Structure, Tertiary, Crystallography, X-Ray, Amino Acid Substitution, Scattering, Small Angle, Protein Tyrosine Phosphatase, Non-Receptor Type 11
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review