The Revolution and Evolution of Shotgun Proteomics for Large-Scale Proteome Analysis

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Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

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Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

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Proteome survey reveals modularity of the yeast cell machinery

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A Model for Random Sampling and Estimation of Relative Protein Abundance in Shotgun Proteomics

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Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS

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Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry

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Direct analysis of protein complexes using mass spectrometry

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A tissue-specific atlas of mouse protein phosphorylation and expression

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Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae

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A probability-based approach for high-throughput protein phosphorylation analysis and site localization

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Absolute Quantification of Proteins by LCMSE

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Highly Selective Enrichment of Phosphorylated Peptides from Peptide Mixtures Using Titanium Dioxide Microcolumns

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Practical implications of some recent studies in electrospray ionization fundamentals

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Large-scale characterization of HeLa cell nuclear phosphoproteins

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A proteomic view of the Plasmodium falciparum life cycle

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Proteomic characterization of the human centrosome by protein correlation profiling

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Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins

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The hMre11/hRad50 Protein Complex and Nijmegen Breakage Syndrome: Linkage of Double-Strand Break Repair to the Cellular DNA Damage Response

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Characterization of Peptides Bound to the Class I MHC Molecule HLA-A2.1 by Mass Spectrometry

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Protein sequencing by tandem mass spectrometry.

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Activity-based protein profiling: The serine hydrolases

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Accurate quantitation of protein expression and site-specific phosphorylation.

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New developments in biochemical mass spectrometry: electrospray ionization.

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Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria.

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Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra

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Isolation of phosphoproteins by immobilized metal (Fe3+) affinity chromatography

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Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii

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Mass spectrometry and the age of the proteome

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Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry

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SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function

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Mapping intact protein isoforms in discovery mode using top-down proteomics

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A Protein Complex Network of Drosophila melanogaster

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Nuclear Membrane Proteins with Potential Disease Links Found by Subtractive Proteomics

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A method for the comprehensive proteomic analysis of membrane proteins

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Shotgun identification of protein modifications from protein complexes and lens tissue

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Direct Analysis and Identification of Proteins in Mixtures by LC/MS/MS and Database Searching at the Low-Femtomole Level

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Global Survey of Organ and Organelle Protein Expression in Mouse: Combined Proteomic and Transcriptomic Profiling

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Value of Using Multiple Proteases for Large-Scale Mass Spectrometry-Based Proteomics

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Global analysis of transcript and protein levels across the Plasmodium falciparum life cyclePreprint

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Analysis of the Human Endogenous Coregulator Complexome

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Metabolic labeling of C. elegans and D. melanogaster for quantitative proteomics

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Analysis of Quantitative Proteomic Data Generated via Multidimensional Protein Identification Technology

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Metabolic Labeling of Mammalian Organisms with Stable Isotopes for Quantitative Proteomic Analysis

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Sample preparation and digestion for proteomic analyses using spin filters

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Mining Genomes: Correlating Tandem Mass Spectra of Modified and Unmodified Peptides to Sequences in Nucleotide Databases

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Correlation of Relative Abundance Ratios Derived from Peptide Ion Chromatograms and Spectrum Counting for Quantitative Proteomic Analysis Using Stable Isotope Labeling

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Extremely long-lived nuclear pore proteins in the rat brain

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A Set of Consensus Mammalian Mediator Subunits Identified by Multidimensional Protein Identification Technology

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Quantitative Mass Spectrometry Identifies Insulin Signaling Targets in C. elegans

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Variations in the Relative Abundance of the Carbon Isotopes

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Quantitative Analysis of Bacterial and Mammalian Proteomes Using a Combination of Cysteine Affinity Tags and 15N-Metabolic Labeling

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High-Efficiency Nanoscale Liquid Chromatography Coupled On-Line with Mass Spectrometry Using Nanoelectrospray Ionization for Proteomics

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Time-of-Flight Mass Spectrometry and Gas-Liquid Partition Chromatography

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Quantitation and Facilitated de Novo Sequencing of Proteins by Isotopic N-Terminal Labeling of Peptides with a Fragmentation-Directing Moiety

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A Correlation Algorithm for the Automated Quantitative Analysis of Shotgun Proteomics Data

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Simultaneous Qualitative and Quantitative Analysis of theEscherichia coli Proteome

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Assigning Function to Yeast Proteins by Integration of Technologies

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Proteomic and phosphoproteomic comparison of human ES and iPS cells

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Tandem mass spectrometry reveals that three photosystem II proteins of spinach chloroplasts contain N-acetyl-O-phosphothreonine at their NH2 termini.

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RNA-Dependent Cysteine Biosynthesis in Archaea

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Identification of post-translational modifications by blind search of mass spectra

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Automated Identification of Amino Acid Sequence Variations in Proteins by HPLC/Microspray Tandem Mass Spectrometry

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Multidimensional LC Separations in Shotgun Proteomics

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High Throughput Proteome-Wide Precision Measurements of Protein Expression Using Mass Spectrometry

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Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards

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Amino acid residue specific stable isotope labeling for quantitative proteomics

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Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry

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Shotgun collision‐induced dissociation of peptides using a time of flight mass analyzer

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Multidimensional Separations for Protein/Peptide Analysis in the Post-Genomic Era

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FAB-MAPPING of recombinant-DNA protein products

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Instant Integrated Ultradeep Quantitative-structural Membrane Proteomics Discovered Post-translational Modification Signatures for Human Cys-loop Receptor Subunit Bias

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