The importance of repairing stalled replication forks

Cox, Michael M., Goodman, Myron F., Kreuzer, Kenneth N., Sherratt, David J., Sandler, Steven J., Marians, Kenneth J.·2000·Nature

Cited by (999)

Items 101–200 of 999

  1. The Endogenous Mus81-Eme1 Complex Resolves Holliday Junctions by a Nick and Counternick Mechanism
    Pierre-Henri L. Gaillard, Eishi Noguchi, Paul Shanahan, Paul R. Russell · 2003 · Molecular Cell
  2. Happy Hollidays: 40th anniversary of the Holliday junction
    Yilun Liu, Stephen Craig West · 2004 · Nature Reviews Molecular Cell Biology
  3. Crystal structure of a DinB family error-prone DNA polymerase from Sulfolobus solfataricus.
    Laura F. Silvian, Eric A. Toth, Phuong Pham, Myron F. Goodman, Tom E. Ellenberger · 2001 · Nature Structural Biology
  4. Multiple Genetic Pathways for Restarting DNA Replication Forks in Escherichia coli K-12
    Steven J. Sandler · 2000 · Genetics
  5. PriA helicase and SSB interact physically and functionally
    Chris J. Cadman · 2004 · Nucleic Acids Research
  6. Evolution of prokaryotic gene order: genome rearrangements in closely related species
    Suyama, Mikita, Bork, Peer · 2001 · Trends in Genetics
  7. Mechanism of Holliday junction resolution by the human GEN1 protein
    Ulrich Rass, Sarah A. Compton, Joao Matos, Martin R. Singleton, Stephen C.Y. Ip, Miguel G. Blanco, Jack D. Griffith, Stephen C.Y. Ip · 2010 · Genes & Development
  8. The expanding polymerase universe
    Myron F. Goodman, Brigette L. Tippin · 2000 · Nature Reviews Molecular Cell Biology
  9. XRCC3 and Rad51 Modulate Replication Fork Progression on Damaged Vertebrate Chromosomes
    Judith Henry-Mowatt, Dean Andrew Jackson, Jean‐Yves Masson, Penny A Johnson, Paula M. Clements, Fiona E. Benson, Larry H. Thompson, Shunichi Takeda, Stephen Craig West, Keith W. Caldecott · 2003 · Molecular Cell
  10. Protein dynamics of human RPA and RAD51 on ssDNA during assembly and disassembly of the RAD51 filament
    Chu Jian Ma, Bryan Gibb, Youngho Kwon, Patrick Sung, Eric C. Greene · 2016 · Nucleic Acids Research
  11. Transcriptome analysis reveals cyclobutane pyrimidine dimers as a major source of UV‐induced DNA breaks
    George A. Garinis, James R. Mitchell, Michael J. Moorhouse, Katsuhiro Hanada, Harm de Waard, Dimitri Vandeputte, Judith J M Jans, Karl Brand, Marcel Smid, Peter J. van der Spek et al. · 2005 · The EMBO Journal
  12. Structure and mechanism of the RuvB holliday junction branch migration motor
    Christopher D. Putnam, S. Clancy, Hiro Tsuruta, Susana González, James G. Wetmur, John A. Tainer · 2001 · Journal of Molecular Biology
  13. DNA Helicases Required for Homologous Recombination and Repair of Damaged Replication Forks
    Leonard Wu, Ian David Hickson · 2006 · Annual Review of Genetics
  14. Differential Contributions of Mammalian Rad54 Paralogs to Recombination, DNA Damage Repair, and Meiosis
    Joanna Wesoły, Sheba Agarwal, Stefán Sigurðsson, Wendy Bussen, Stephen Van Komen, Jian Qin, Harry VAN STEEG, Jan van Benthem, Evelyne Wassenaar, Willy M. Baarends et al. · 2006 · Molecular and Cellular Biology
  15. RecA protein promotes the regression of stalled replication forks in vitro
    Mara E. Robu, Ross B. Inman, Michael Matthew Cox · 2001 · Proceedings of the National Academy of Sciences
  16. Environmental Stress and Lesion-Bypass DNA Polymerases
    Takehiko Nohmi · 2006 · Annual Review of Microbiology
  17. The Disposition of Nascent Strands at Stalled Replication Forks Dictates the Pathway of Replisome Loading during Restart
    Ryan C. Heller, Kenneth J. Marians · 2005 · Molecular Cell
  18. BRCA1 controls homologous recombination at Tus/Ter-stalled mammalian replication forks
    Nicholas A. Willis, Gurushankar Chandramouly, Bin Huang, Amy Kwok, Cindy Follonier, Chu‐Xia Deng, Ralph Scully · 2014 · Nature
  19. Replication Termination inEscherichia coli: Structure and Antihelicase Activity of the Tus-TerComplex
    Cameron Neylon, Andrew V. Kralicek, Thomas Hill, Nicholas E. Dixon · 2005 · Microbiology and Molecular Biology Reviews
  20. Formation of Holliday junctions by regression of nascent DNA in intermediates containing stalled replication forks: RecG stimulates regression even when the DNA is negatively supercoiled
    Peter McGlynn, Robert G. Lloyd, Kenneth J. Marians · 2001 · Proceedings of the National Academy of Sciences
  21. A Major Role of the RecFOR Pathway in DNA Double-Strand-Break Repair through ESDSA in Deinococcus radiodurans
    Esma Bentchikou, Pascale Servant, Geneviève Coste, Suzanne Sommer · 2010 · PLoS Genetics
  22. The Transcription Factor DksA Prevents Conflicts between DNA Replication and Transcription Machinery
    Ashley K. Tehranchi, Matthew D. Blankschien, Yan Zhang, Jennifer A. Halliday, Anjana Srivatsan, Jia Peng, Christophe Herman, Jue D. Wang · 2010 · Cell
  23. p53's double life: transactivation-independent repression of homologous recombination
    Pascale Bertrand, Yannick Saintigny, Bernard S. López · 2004 · Trends in Genetics
  24. The architecture of the human Rad54–DNA complex provides evidence for protein translocation along DNA
    Dejan Ristić, Claire Wyman, Coen C. Paulusma, Roland Kanaar · 2001 · Proceedings of the National Academy of Sciences
  25. ATP Hydrolysis by Mammalian RAD51 Has a Key Role during Homology-directed DNA Repair
    Jeremy M. Stark, Peng Hu, Andrew J. Pierce, Mary Ellen Moynahan, Nathan A. Ellis, Maria Jasin · 2002 · Journal of Biological Chemistry
  26. Fate of DNA replication fork encountering a single DNA lesion during oriC plasmid DNA replication in vitro
    Kumiko Higuchi, Tsutomu Katayama, Shigenori Iwai, Masumi Hidaka, Takashi Horiuchi, Hisaji Maki · 2003 · Genes to Cells
  27. Bacterial populations as perfect gases: genomic integrity and diversification tensions in Helicobacter pylori
    Josephine Kang, Martin J. Blaser · 2006 · Nature Reviews Microbiology
  28. Population Genetics in the Human Microbiome
    Nandita R. Garud, Katherine S. Pollard · 2019 · Trends in Genetics
  29. Genome stability and the processing of damaged replication forks by RecG
    Peter McGlynn, Robert G. Lloyd · 2002 · Trends in Genetics
  30. Fidelity of Escherichia coli DNA Polymerase IV
    Sawami Kobayashi, Michael R. Valentine, Phuong Pham, Mike E. O’Donnell, Myron F. Goodman · 2002 · Journal of Biological Chemistry
  31. The heat-shock response of Listeria monocytogenes comprises genes involved in heat shock, cell division, cell wall synthesis, and the SOS response
    Stijn van der Veen, Torsten Hain, Jeroen A. Wouters, Hamid Hossain, Willem M. de Vos, Tjakko Abee, Trinad Chakraborty, Marjon H. J. Wells-Bennik · 2007 · Microbiology
  32. Computer viruses
    Raluca Gagescu · 2001 · Nature Reviews Molecular Cell Biology
  33. Genome Engineering in Vibrio cholerae: A Feasible Approach to Address Biological Issues
    Marie‐Eve Val, Ole Skovgaard, Magaly Ducos‐Galand, M. Bland, Didier Mazel · 2012 · PLoS Genetics
  34. Molecular Adaptation Mechanisms Employed by Ethanologenic Bacteria in Response to Lignocellulose-derived Inhibitory Compounds
    Omodele Ibraheem, Bongani Kaiser Ndimba · 2013 · International Journal of Biological Sciences
  35. Forward and Reverse Motion of Single RecBCD Molecules on DNA
    Thomas T. Perkins, Hung‐Wen Li, Ravindra V. Dalal, Jeff Gelles, Steven M. Block · 2004 · Biophysical Journal
  36. Directed Evolution of Ionizing Radiation Resistance in Escherichia coli
    Dennis R. Harris, Steve V. Pollock, Elizabeth A. Wood, Reece Goiffon, Audrey J. Klingele, Eric L. Cabot, Wendy Schackwitz, Joel Martin, Julie M. Eggington, Timothy J. Durfee et al. · 2009 · Journal of Bacteriology
  37. The Escherichia coli Replisome Is Inherently DNA Damage Tolerant
    Joseph T.P. Yeeles, Kenneth J. Marians · 2011 · Science
  38. Phage annealing proteins promote oligonucleotide-directed mutagenesis in Escherichia coli and mouse ES cells
    Youming Zhang, Joep P. P. Muyrers, Jeanette M. J. Rientjes, Adrian Francis Stewart · 2003 · BMC Molecular Biology
  39. MUS81-EME2 Promotes Replication Fork Restart
    Alessandra Pepe, Stephen Craig West · 2014 · Cell Reports
  40. Asymmetry of DNA replication fork progression in Werner's syndrome
    Ana M. Rodríguez-López, Dean Andrew Jackson, Francisco J. Iborra, Lynne S. Cox · 2002 · Aging Cell
  41. Visualization of DNA double‐strand break repair in live bacteria reveals dynamic recruitment of Bacillus subtilis RecF, RecO and RecN proteins to distinct sites on the nucleoids
    Dawit Kidane, Humberto Sánchez, Juan C. Alonso, Peter L. Graumann · 2004 · Molecular Microbiology
  42. Crystal Structure of Archaeal Recombinase RadA
    Yan Wu, Yujiong He, Ignace A. Moya, Xinguo Qian, Yu Luo · 2004 · Molecular Cell
  43. DNA repair: Spot(light)s on chromatin
    Mauro Modesti, Roland Kanaar · 2001 · Current Biology
  44. Historical overview: Searching for replication help in all of the rec places
    Michael Matthew Cox · 2001 · Proceedings of the National Academy of Sciences
  45. Functional relationships of FANCC to homologous recombination, translesion synthesis, and BLM
    Seiki Hirano, Kazuhiko Yamamoto, Masamichi Ishiai, Mitsuyoshi Yamazoe, Masayuki Seki, Nobuko Matsushita, Mioko Ohzeki, Yukiko M Yamashita, Hiroshi Arakawa, Jean-Marie Buerstedde et al. · 2004 · The EMBO Journal
  46. Human Rad51 filaments on double- and single-stranded DNA: correlating regular and irregular forms with recombination function
    D. Ristić · 2005 · Nucleic Acids Research
  47. Engineered proteins detect spontaneous DNA breakage in human and bacterial cells
    Chandan Shee, Ben D. Cox, Franklin Gu, Elizabeth M. Luengas, Mohan Chandra Joshi, Li-Ya Chiu, David R. Magnan, Jennifer A. Halliday, Ryan L. Frisch, Janet L. Gibson et al. · 2013 · eLife
  48. Exploring Rare Conformational Species and Ionic Effects in DNA Holliday Junctions Using Single-molecule Spectroscopy
    Chirlmin Joo, Sean McKinney, David M.J. Lilley, Taekjip Ha · 2004 · Journal of Molecular Biology
  49. Direct Rescue of Stalled DNA Replication Forks via the Combined Action of PriA and RecG Helicase Activities
    Amanda V Gregg, Peter McGlynn, Razieh Pourahmad Jaktaji, Robert G. Lloyd · 2002 · Molecular Cell
  50. Molecular Design and Functional Organization of the RecA Protein
    Dharia A. McGrew, Kendall L. Knight · 2003 · Critical Reviews in Biochemistry and Molecular Biology
  51. The RecOR proteins modulate RecA protein function at 5′ ends of single‐stranded DNA
    Julie M. Bork, Michael Matthew Cox, Ross B. Inman · 2001 · The EMBO Journal
  52. Single-stranded heteroduplex intermediates in λ Red homologous recombination
    Marcello Maresca, Axel Erler, Jun Fu, Anne Friedrich, Youming Zhang, A. Francis Stewart · 2010 · BMC Molecular Biology
  53. Circles: The replication-recombination-chromosome segregation connection
    François‐Xavier Barre, Britta Søballe, Bénédicte Michel, Mira Aroyo, Malcolm Robertson, David J. Sherratt · 2001 · Proceedings of the National Academy of Sciences
  54. RAD51AP1 Is a Structure-Specific DNA Binding Protein that Stimulates Joint Molecule Formation during RAD51-Mediated Homologous Recombination
    Mauro Modesti, Magda Budzowska, Céline Baldeyron, Jeroen Demmers, Rodolfo Ghirlando, Roland Kanaar · 2007 · Molecular Cell
  55. Enhanced Genomic Instability and Defective Postreplication Repair in RAD18 Knockout Mouse Embryonic Stem Cells
    Satoshi Tateishi, Hitoshi Niwa, Jun‐ichi Miyazaki, Shiho Fujimoto, Hirokazu Inoue, Masaru Yamaizumi · 2003 · Molecular and Cellular Biology
  56. Functional Analysis of the Replication Fork Proteome Identifies BET Proteins as PCNA Regulators
    Sarah R. Wessel, Kareem N. Mohni, Jessica W. Luzwick, Huzefa Dungrawala, David Cortez · 2019 · Cell Reports
  57. Structural basis of Escherichia coli single-stranded DNA-binding protein stimulation of exonuclease I
    Duo Lü, James L. Keck · 2008 · Proceedings of the National Academy of Sciences
  58. Slx1-Slx4 Are Subunits of a Structure-specific Endonuclease That Maintains Ribosomal DNA in Fission Yeast
    Stéphane Coulon, Pierre-Henri L. Gaillard, Charly Chahwan, William Hayes McDonald, John R. Yates, Paul R. Russell · 2003 · Molecular Biology of the Cell
  59. Extensive Loss of Heterozygosity Is Suppressed during Homologous Repair of Chromosomal Breaks
    Jeremy M. Stark, Maria Jasin · 2002 · Molecular and Cellular Biology
  60. Double-strand break repair in bacteria: a view fromBacillus subtilis
    Silvia Ayora, Begoña Carrasco, Paula P. Cárdenas, Carolina Elvira César, Cristina Cañas, Tribhuwan Yadav, Chiara Marchisone, Juan C. Alonso · 2011 · FEMS Microbiology Reviews
  61. Functional Uncoupling of Twin Polymerases
    Peter McInerney, Mike E. O’Donnell · 2004 · Journal of Biological Chemistry
  62. The role of AtMUS81 in DNA repair and its genetic interaction with the helicase AtRecQ4A
    Frank Hartung, Stefanie Suer, T. Bergmann, Holger Puchta · 2006 · Nucleic Acids Research
  63. BRCA1 Is Required for Postreplication Repair after UV-Induced DNA Damage
    Shailja Pathania, Jenna Nguyen, Sarah J. Hill, Ralph Scully, Guillaume Adelmant, Jarrod A. Marto, Jean Feunteun, David M. Livingston · 2011 · Molecular Cell
  64. A RecA Filament Capping Mechanism for RecX Protein
    Julia C. Drees, Shelley L. Lusetti, Sindhu Chitteni‐Pattu, Ross B. Inman, Michael Matthew Cox · 2004 · Molecular Cell
  65. Anticipating chromosomal replication fork arrest: SSB targets repair DNA helicases to active forks
    François Lecointe, Céline Sérèna, Marion Velten, Audrey Costes, Stephen McGovern, Jean‐Christophe Meile, Jeff Errington, Stanislav Dusko Ehrlich, Philippe H. Noirot, Patrice Polard · 2007 · The EMBO Journal
  66. Mechanisms of Dealing with DNA Damage-Induced Replication Problems
    Magda Budzowska, Roland Kanaar · 2008 · Cell Biochemistry and Biophysics
  67. Homologous Recombination Near and Far from DNA Breaks: Alternative Roles and Contrasting Views
    Gerald R. Smith · 2001 · Annual Review of Genetics
  68. Double-strand breaks and tumorigenesis
    Andrew J. Pierce, Jeremy M. Stark, Felipe D. Araujo, Mary Ellen Moynahan, Marianne Berwick, Maria Jasin · 2001 · Trends in Cell Biology
  69. Genetic recombination and the cell cycle: what we have learned from chromosome dimers
    Christian Lesterlin, François‐Xavier Barre, François Cornet · 2004 · Molecular Microbiology
  70. Restraining the V(D)J recombinase
    David B. Roth · 2003 · Nature reviews. Immunology
  71. RuvABC‐dependent double‐strand breaks in dnaBts mutants require RecA
    Marie Seigneur, Stanislav Dusko Ehrlich, Bénédicte Michel · 2000 · Molecular Microbiology
  72. RAD51 localization and activation following DNA damage
    Madalena Tarsounas, Adelina A. Davies, Stephen Craig West · 2004 · Philosophical Transactions of the Royal Society B Biological Sciences
  73. Hybridization assay of hepatitis B virus by QCM peptide nucleic acid biosensor
    Chunyan Yao, Tangyou Zhu, Jin Ping Tang, Rong Wu, Qinghai Chen, Ming Chen, Bo Zhang, Junfu Huang, Weiling Fu · 2007 · Biosensors and Bioelectronics
  74. The SOS response of Listeria monocytogenes is involved in stress resistance and mutagenesis
    Stijn van der Veen, Saskia van Schalkwijk, Douwe Molenaar B, Willem M. de Vos, Tjakko Abee, Marjon H. J. Wells-Bennik · 2009 · Microbiology
  75. Efficiency and Accuracy of SOS-induced DNA Polymerases Replicating Benzo[a]pyrene-7,8-diol 9,10-Epoxide A and G Adducts
    Xuan Shen, Jane M. Sayer, Heiko Kroth, Ingrid Pontén, Mike E. O’Donnell, Roger Woodgate, Donald M. Jerina, Myron F. Goodman · 2002 · Journal of Biological Chemistry
  76. Lessons from 50 years of SOS DNA-damage-induced mutagenesis
    Katharina Schlacher, Myron F. Goodman · 2007 · Nature Reviews Molecular Cell Biology
  77. The nonmutagenic repair of broken replication forks via recombination
    Cox, Michael M · 2002 · Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis
  78. Adaptive value of sex in microbial pathogens
    Richard E. Michod, Harris Bernstein, Aurora M. Nedelcu · 2008 · Infection Genetics and Evolution
  79. Structural mechanisms of PriA-mediated DNA replication restart
    Basudeb Bhattacharyya, Nicholas P. George, Tiffany M. Thurmes, Ruobo Zhou, Niketa M. Jani, Sarah R. Wessel, Steven J. Sandler, Taekjip Ha, James L. Keck · 2013 · Proceedings of the National Academy of Sciences
  80. PriA Mediates DNA Replication Pathway Choice at Recombination Intermediates
    Liewei Xu, Kenneth J. Marians · 2003 · Molecular Cell
  81. RecA filament sliding on DNA facilitates homology search
    Kaushik Ragunathan, Cheng Liu, Taekjip Ha · 2012 · eLife
  82. Both RadA and RadB Are Involved in Homologous Recombination inPyrococcus furiosus
    Kayoko Komori, Tomoko Miyata, Jocelyne DiRuggiero, Rhonda Holley‐Shanks, Ikuko Hayashi, Isaac Cann, Kota Mayanagi, Hideo Shinagawa, Yoshizumi Ishino · 2000 · Journal of Biological Chemistry
  83. B Cell Signaling and Tumorigenesis
    Hassan Jumaa, Rudolf W. Hendriks, Michael G. Reth · 2004 · Annual Review of Immunology
  84. Untangling intracellular DNA topology
    Olivier Espéli, Kenneth J. Marians · 2004 · Molecular Microbiology
  85. FtsK functions in the processing of a Holliday junction intermediate during bacterial chromosome segregation
    François‐Xavier Barre, Mira Aroyo, Sean D. Colloms, Annett Helfrich, François Cornet, David J. Sherratt · 2000 · Genes & Development
  86. Ring‐shaped architecture of RecR: implications for its role in homologous recombinational DNA repair
    Byung Il Lee, Kyoung Hoon Kim, Soo-Jeong Park, Soo Hyun Eom, Hyun Kyu Song, Se Won Suh · 2004 · The EMBO Journal
  87. Independence of replisomes in Escherichia coli chromosomal replication
    Adam M. Breier, Heinz‐Ulrich G. Weier, Nicholas R. Cozzarelli · 2005 · Proceedings of the National Academy of Sciences
  88. Hyperinitiation of DNA replication in Escherichia coli leads to replication fork collapse and inviability
    Lyle A. Simmons, Adam M. Breier, Nicholas R. Cozzarelli, Jon M. Kaguni · 2004 · Molecular Microbiology
  89. Adaptive Mutation in Escherichia coli
    Patricia L. Foster · 2000 · Cold Spring Harbor Symposia on Quantitative Biology
  90. Genome-wide coorientation of replication and transcription reduces adverse effects on replication in Bacillus subtilis
    Jue D. Wang, Melanie Barker Berkmen, Alan D. Grossman · 2007 · Proceedings of the National Academy of Sciences
  91. Mice expressing an error-prone DNA polymerase in mitochondria display elevated replication pausing and chromosomal breakage at fragile sites of mitochondrial DNA
    Laura J. Bailey, Tricia J. Cluett, Aurelio Reyes, Tomas A. Prolla, Joanna Poulton, Christiaan Leeuwenburgh, Ian James Holt · 2009 · Nucleic Acids Research
  92. Participation of recombination proteins in rescue of arrested replication forks in UV-irradiated Escherichia coli need not involve recombination
    Justin Courcelle, Philip C. Hanawalt · 2001 · Proceedings of the National Academy of Sciences
  93. swi1 - and swi3 -dependent and independent replication fork arrest at the ribosomal DNA of Schizosaccharomyces pombe
    Gregor Krings, Deepak Bastia · 2004 · Proceedings of the National Academy of Sciences
  94. Replication restart in UV‐irradiated Escherichia coli involving pols II, III, V, PriA, RecA and RecFOR proteins
    Savithri Rangarajan, Roger Woodgate, Myron F. Goodman · 2002 · Molecular Microbiology
  95. DnaB, DnaD and DnaI proteins are components of the Bacillus subtilis replication restart primosome
    Claude Bruand, Michaël Farache, Stephen McGovern, Stanislav Dusko Ehrlich, Patrice Polard · 2001 · Molecular Microbiology
  96. A transcriptional response to replication status mediated by the conserved bacterial replication protein DnaA
    Alexi I. Goranov, Luba Katz, Adam M. Breier, Christopher B. Burge, Alan D. Grossman · 2005 · Proceedings of the National Academy of Sciences
  97. Minding the gap: The underground functions of BRCA1 and BRCA2 at stalled replication forks
    Ganesh Nagaraju, Ralph Scully · 2007 · DNA repair
  98. Archaeal Hel308 helicase targets replication forks in vivo and in vitro and unwinds lagging strands
    Colin P. Guy · 2005 · Nucleic Acids Research
  99. Structure and Function of RecQ DNA Helicases
    Richard J. Bennett, James L. Keck · 2004 · Critical Reviews in Biochemistry and Molecular Biology
  100. DNA Repair in Mammalian Cells
    Christophe Kunz, Yusuke Saito, Primo Schär · 2009 · Cellular and Molecular Life Sciences