The importance of repairing stalled replication forks

Cited by (998)

Items 801–900 of 998

  1. Examination of the roles of a conserved motif in the PriA helicase in structure-specific DNA unwinding and processivity
    Alexander T. Duckworth, Tricia A. Windgassen, James L. Keck · 2021 · PLoS ONE
  2. Protein Interactions in the T7 DNA Replisome Facilitate DNA Damage Bypass
    Zhenyu Zou, Ze Chen, Qizhen Xue, Ying Xin Xu, Jingyuan Xiong, Ping Yang, Shuai Le, Huidong Zhang · 2018 · ChemBioChem
  3. Insight into the interaction between PriB and DnaT on bacterial DNA replication restart: Significance of the residues on PriB dimer interface and highly acidic region on DnaT
    Saki Fujiyama, Yoshito Abe, Mitsunori Shiroishi, Yohei Ikeda, Tadashi Ueda · 2019 · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
  4. Crystal structure of the C-terminal domain of the primosomal DnaT protein: Insights into a new oligomerization mechanism
    Kuan‐Lin Chen, Yen‐Hua Huang, Jen-Fu liao, Wei‐Chen Lee, Cheng-Yang Huang · 2019 · Biochemical and Biophysical Research Communications
  5. Catalytically inactive T7 DNA polymerase imposes a lethal replication roadblock
    Alfredo J. Hernandez, Seung‐Joo Lee, Seungwoo Chang, Jaehun A. Lee, Joseph J. Loparo, Charles Clifton Richardson · 2020 · Journal of Biological Chemistry
  6. Interaction with single-stranded DNA-binding protein modulates Escherichia coli RadD DNA repair activities
    Miguel A. Osorio Garcia, Elizabeth Anne Wood, James L. Keck, Michael Matthew Cox · 2023 · Journal of Biological Chemistry
  7. Werner Syndrome as a Model of Human Aging
    Raymond J. Monnat · 2006 · Elsevier eBooks
  8. NER enzymes maintain genome integrity and suppress homologous recombination in the absence of exogenously induced DNA damage in Pseudomonas putida
    Julia Sidorenko, Kärt Ukkivi, Maia Kivisaar · 2014 · DNA repair
  9. Biochemical reconstitution of abasic DNA lesion replication in Xenopus extracts
    Shuren Liao, Yoshihiro Matsumoto, Hong Yan · 2007 · Nucleic Acids Research
  10. The Bacillus subtilis PriA Winged Helix Domain Is Critical for Surviving DNA Damage
    Lindsay A. Matthews, Lyle A. Simmons · 2022 · Journal of Bacteriology
  11. Effect of a Defective Clamp Loader Complex of DNA Polymerase III on Growth and SOS Response in Pseudomonas aeruginosa
    Maria Concetta Spinnato, Alessandra Lo Sciuto, Jessica Mercolino, Massimiliano Lucidi, Livia Leoni, Giordano Rampioni, Paolo Visca, Francesco Imperi · 2022 · Microorganisms
  12. Isolation and characterization of drug resistantSalmonella typhifrom sewage water
    Vanka Kanth Swaroop, Aparna Mukherjee, Sumit Sharma, William Jabez Osborne · 2015 · Research Journal of Pharmacy and Technology
  13. The RecA Protein
    Michael Matthew Cox · 2014 · ASM Press eBooks
  14. Knife-edge of design
    JACK COHEN · 2001 · Nature
  15. Escherichia coliNucleoside Diphosphate Kinase Mutants Depend on Translesion DNA Synthesis To Prevent Mutagenesis
    Jared T. Nordman, Andrew Wright · 2011 · Journal of Bacteriology
  16. Functional dissection of the Schizosaccharomyces pombe Holliday junction resolvase Ydc2: in vivo role in mitochondrial DNA maintenance
    Barbara Sigala, Irina R. Tsaneva · 2003 · European Journal of Biochemistry
  17. Fanconi anemia: genetic analysis of a human disease using chicken system
    Minoru Takata, Hiroyuki Kitao, Masamichi Ishiai · 2007 · Cytogenetic and Genome Research
  18. Modulation of butyrate-induced stress responses in Bacteroides by lotus seed resistant starch and its sugar degradation products
    Yijun Jiang, Guangquan Zhang, Jinhan Su, Yi Zhang, Qing Chang, Hongliang Zeng · 2025 · Carbohydrate Polymers
  19. Duplicate Gene Expression and Possible Mechanisms of Paralog Retention During Bacterial Genome Expansion
    Arkadiy I Garber, Emiko B Sano, Amy L Gallagher, Scott R. Miller · 2024 · Genome Biology and Evolution
  20. Revealing the DNA Unwinding Activity and Mechanism of Fork Reversal by RecG While Exposed to Variants of Stalled Replication-fork at Single-Molecular Resolution
    Debolina Bandyopadhyay, Padmaja Prasad Mishra · 2022 · Journal of Molecular Biology
  21. Purification and Characterization of Escherichia coli DNA Polymerase V
    Katharina Schlacher, Qingfei Jiang, Roger Woodgate, Myron F. Goodman · 2006 · Methods in enzymology on CD-ROM/Methods in enzymology
  22. Structure of a filament of stacked octamers of human DMC1 recombinase
    Liqin Du, Yu Luo · 2013 · Acta Crystallographica Section F Structural Biology and Crystallization Communications
  23. Discontinuous leading-strand synthesis: a stop–start story
    Joseph T.P. Yeeles · 2014 · Biochemical Society Transactions
  24. Stalled replication fork rescue requires a novel DNA helicase
    Piero R. Bianco · 2016 · Methods
  25. Bacteriophage T5 gene D10 encodes a branch-migration protein
    Io Nam Wong, Jon R. Sayers, Cyril M. Sanders · 2016 · Scientific Reports
  26. In vitro site‐specific recombination mediated by the tyrosine recombinase XerA of Thermoplasma acidophilum
    Minji Jo, Yasuto Murayama, Yasuhiro Tsutsui, Hiroshi Iwasaki · 2017 · Genes to Cells
  27. Mutational Analysis of Residues in PriA and PriC Affecting Their Ability To Interact with SSB in Escherichia coli K-12
    A. Klimova, Steven J. Sandler · 2020 · Journal of Bacteriology
  28. Dysregulated DnaB unwinding induces replisome decoupling and daughter strand gaps that are countered by RecA polymerization
    Megan S. Behrmann, Himasha M. Perera, Malisha U. Welikala, Jacquelynn E. Matthews, Lauren J. Butterworth, M. Trakselis · 2024 · Nucleic Acids Research
  29. Mating-type switching in S. pombe
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  30. Effect of Single-Strand Break on Branch Migration and Folding Dynamics of Holliday Junctions
    Dmytro B. Palets, Alexander Y. Lushnikov, Mikhail A. Karymov, Yuri L. Lyubchenko · 2010 · Biophysical Journal
  31. An Hfq-dependent post-transcriptional mechanism fine tunes RecB expression in Escherichia coli
    Irina Kalita, Ira Alexandra Iosub, Lorna McLaren, Louise Goossens, Sander Granneman, Meriem El Karoui · 2024 · eLife
  32. A structural model of the PriB–DnaT complex in Escherichia coli replication restart
    Yoshito Abe, Yohei Ikeda, Saki Fujiyama, R. Manjunatha Kini, Tadashi Ueda · 2020 · FEBS Letters
  33. The Biochemical Mechanism of Fork Regression in Prokaryotes and Eukaryotes—A Single Molecule Comparison
    Piero R. Bianco · 2022 · International Journal of Molecular Sciences
  34. Replication-associated inversions are the dominant form of bacterial chromosome structural variation
    Matthew D’Iorio, Ken Dewar · 2022 · Life Science Alliance
  35. Spontaneous and double-strand break repair-associated quasipalindrome and frameshift mutagenesis in budding yeast: role of mismatch repair
    Neal Sugawara, Mason J. Towne, Susan T. Lovett, James E. Haber · 2024 · Genetics
  36. A Single Residue Determines the Cooperative Binding Property of a Primosomal DNA Replication Protein, PriB, to Single-Stranded DNA
    Yen‐Hua Huang, Hsin-Hsien Lin, Cheng-Yang Huang · 2012 · Bioscience Biotechnology and Biochemistry
  37. The priB Gene of Klebsiella pneumoniae Encodes a 104-Amino Acid Protein That Is Similar in Structure and Function to Escherichia coli PriB
    Linda Berg, Matthew E. Lopper · 2011 · PLoS ONE
  38. Identification of a Small Molecule PriA Helicase Inhibitor
    Bharath Sunchu, Linda Berg, Hayley E. Ward, Matthew E. Lopper · 2012 · Biochemistry
  39. ATPase Activity of Bacillus subtilis RecA Affects the Dynamic Formation of RecA Filaments at DNA Double Strand Breaks
    Rogelio Hernández-Tamayo, Niklas Steube, Thomas Heimerl, Georg K. A. Hochberg, Peter L. Graumann · 2022 · mSphere
  40. Crystal Structure of DNA Replication Protein SsbA Complexed with the Anticancer Drug 5-Fluorouracil
    Hsing-Hui Su, Yen‐Hua Huang, Yi Lien, Po-Chun Yang, Cheng-Yang Huang · 2023 · International Journal of Molecular Sciences
  41. Repair of DNA Double-Strand Breaks and Mismatches in Drosophila
    Carlos C. Flores · 2001 · Humana Press eBooks
  42. Resistance of Gram-Negative Bacilli to Antimicrobials
    Patricia A. Bradford, Charles R. Dean · 2007 · Springer eBooks
  43. Replication forks reverse at high frequency upon replication stress in Physarum polycephalum
    Chrystelle Antoinat Maric, Marianne Bénard · 2014 · Chromosoma
  44. From Strand Exchange to Branch Migration; Bypassing of Non-homologous Sequences by Human Rad51 and Rad54
    Damian E. Urena, Zhaoqing Zhang, Yu‐Cheng Tsai, Yuzhen Wang, Junghuei Chen · 2010 · Journal of Molecular Biology
  45. Roadworks of DNA Damage Bypass during and after Replication
    Yasukazu Daigaku · 2012 · Genes and Environment
  46. Hereditary Breast and Ovarian Cancer Genes
    Ralph Scully, Nadine Puget · 2003 · Humana Press eBooks
  47. Environmental Stress and
    Lesion-Bypass Dna, Takehiko Nohmi · 2006
  48. Global expression analysis of Deinococcus radiodurans' response to ionizing radiation: irrE is a novel regulator of this response
    Ashlee M. Earl · 2003
  49. Crystal structure of RecR from Pseudomonas aeruginosa PAO1
    Shiyou Che, Q. Zhang, M. Bartlam · 2018 · Worldwide Protein Data Bank
  50. Biochemical and Cellular Aspects of Homologous Recombination
    Lieneke R. van Veelen, Joanna Wesoły, Roland Kanaar · 2005 · CRC Press eBooks
  51. An overview of RecQ helicases and related diseases
    Tsz-Ching Yiu, Jiajie Tu, Hoi‐Hung Cheung · 2025 · Aging
  52. Transcription–replication collisions trigger high-fidelity replication reset
    Matthew Brandon Cooke, Kobie T Welch, Laura Deus Ramirez, Katelin M. Hagstrom, Alice X Wen, Jennifer A. Halliday, Susan M. Rosenberg, Christophe Herman · 2025 · Nucleic Acids Research
  53. Single-molecule studies of helicases and translocases in prokaryotic genome-maintenance pathways
    Kelsey S. Whinn, Antoine M. van Oijen, Harshad B. Ghodke · 2021 · DNA repair
  54. Oligomeric state of the N-terminal domain of DnaT for replication restart in Escherichia coli
    Shogo Inoue, Yohei Ikeda, Saki Fujiyama, Tadashi Ueda, Yoshito Abe · 2023 · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
  55. Metal ion activation and DNA recognition by the Deinococcus radiodurans manganese sensor DR2539
    Cristiano Mota, Myles Webster, Melissa Saïdi, U. Kapp, Chloé Zubieta, Gabriele Giachin, José A. Manso, Daniele de Sanctis · 2024 · FEBS Journal
  56. ATP hydrolysis-driven structural transitions within the Saccharomyces cerevisiae Rad51 and Dmc1 nucleoprotein filaments
    Yeonoh Shin, Stefan Y. Kim, Eric C. Greene · 2025 · Journal of Biological Chemistry
  57. Into the life and death: RecA a WISE factor working to integrate survival and evolution in Escherichia coli
    José María Gómez Gómez · 2013 · Advances in Bioscience and Biotechnology
  58. Polymerase trafficking
    Richard T. Pomerantz, Mike E. O’Donnell · 2010 · Transcription
  59. Characterization of Streptococcus pneumoniae PriA helicase and its ATPase and unwinding activities in DNA replication restart
    Min-Guan Lin, Yi-Ching Li, Chwan‐Deng Hsiao · 2020 · Biochemical Journal
  60. Helicases that interact with replication forks: new candidates from archaea
    Edward L. Bolt · 2005 · Biochemical Society Transactions
  61. Damage Signals Triggering the Escherichia coli SOS Response
    Mark D. Sutton · 2005 · CRC Press eBooks
  62. Beneficial and detrimental genes in the cellular response to replication arrest
    Luciane Schons Fonseca, Milena D. Lazova, Janet L. Smith, Mary E. Anderson, Alan D. Grossman · 2022 · PLoS Genetics
  63. Breast cancer gene-1 ( BRCA1 ) potentiates maladaptive repair after kidney injury
    Amrendra K. Ajay, Akinwande A. Akinfolarin, Cody C. Gifford, Venkata S. Sabbisetti, Joseph Vincent Bonventre · 2024 · The Journal of Experimental Medicine
  64. Single-Molecule Förster Resonance Energy Transfer Methods for Real-Time Investigation of the Holliday Junction Resolution by GEN1
    Mohamed A. Sobhy, Amer Bralić, Vlad‐Stefan Raducanu, Muhammad Tehseen, Yujing Ouyang, Masateru Takahashi, Fahad Rashid, Manal S. Zaher, Samir M. Hamdan · 2019 · Journal of Visualized Experiments
  65. TT-pocket/HIRAN: binding to 3′-terminus of DNA for recognition and processing of stalled replication forks
    Hisao Masai · 2022 · The Journal of Biochemistry
  66. Listeria and -Omics Approaches for Understanding its Biology
    Janet R. Donaldson, Kamil Hercík, Aswathy N. Rai, Sweetha Reddy, Mark L. Lawrence, Bindu Nanduri, Mariola J. Edelmann · 2015 · Elsevier eBooks
  67. Gisela Mosig
    Nancy G. Nossal, Jeffrey L. Franklin, Elizabeth Martin Kutter, John W. Drake · 2004 · Genetics
  68. Richard B. Setlow, a commentary on seminal contributions and scientific controversies
    James E. Cleaver · 2001 · Environmental and Molecular Mutagenesis
  69. Abnormal kinetics of induction of UV-stimulated recombination in human DNA repair disorders
    P. J. Abrahams, Ada Houweling, Ron Schouten, Alex J. van der Eb, Carrol Terleth · 2003 · DNA repair
  70. Fork restart protein, PriA, binds around oriC after depletion of nucleotide precursors: Replication fork arrest near the replication origin
    Taku Tanaka, Yasumasa Nishito, Hisao Masai · 2016 · Biochemical and Biophysical Research Communications
  71. Using Yeast Tools to Dissect the Action of Anticancer Drugs: Mechanisms of Enzyme Inhibition and Cell Killing by Agents Targeting DNA Topoisomerases
    Anna T. Rogojina, Zhengsheng Li, Karin C. Nitiss, John L. Nitiss · 2007 · Springer eBooks
  72. Resolution of Multimeric Forms of Circular Plasmids and Chromosomes
    Estelle Crozat, Florian Fournès, François Cornet, Bernard Hallet, Philippe Rousseau · 2015 · ASM Press eBooks
  73. Dr. Jekyll and Mr. Hyde: How the MutSLH Repair System Kills the Cell
    Martin Marinus · 2014 · ASM Press eBooks
  74. Rescuing Replication from Barriers: Mechanistic Insights from Single-Molecule Studies
    Bo Sun · 2019 · Molecular and Cellular Biology
  75. Rec FOR Protein
    Steven J. Sandler · 2001 · Encyclopedia of Life Sciences
  76. Excision Repair and Bypass
    Bernard S. Strauss · 2014 · ASM Press eBooks
  77. Mechanistic coupling of enzymatic activities at the replisome
    Malisha U. Welikala, Lauren J. Butterworth, Rashini Beragama-Arachchi, M. Trakselis · 2025 · Journal of Biological Chemistry
  78. RPA–ssDNA co-phase separation facilitates RAD51 enrichment during homologous recombination
    Yanan Li, Y ZHAO, Yuehua Chen, Teng Wang, Lulu Bi, Yanling Bao, Le Chen, Xia Zhang, Bingkai Cheng, Meng Hu et al. · 2026 · Nucleic Acids Research
  79. Local Mutagenic Impact of Insertions of LTR Retrotransposons on the Mouse Genome
    Érick Desmarais, Khalid Belkhir, John Carlos Garza, François Bonhomme · 2006 · Journal of Molecular Evolution
  80. Sliding to the rescue of damaged DNA
    Bryan Gibb, Eric C. Greene · 2012 · eLife
  81. Use of an unnatural amino acid to map helicase/DNA interfaces via photoactivated crosslinking
    Alexander T. Duckworth, James L. Keck · 2022 · Methods in enzymology on CD-ROM/Methods in enzymology
  82. Robust linear DNA degradation supports replication–initiation-defective mutants in Escherichia coli
    T. V. Pritha Rao, Andrei Kuzminov · 2022 · G3 Genes Genomes Genetics
  83. Lineage-specific amino acids define functional attributes of the protomer-protomer interfaces for the Rad51 and Dmc1 recombinases
    Petassi, Mike, Shin, Yeonoh, Jessop, Aidan M., Morse, Katherine, Kim, Stefan Y., Kuppa, Sahiti, Matei, Razvan, Raina, Vivek B., Greene, Eric C. · 2026 · Journal of Biological Chemistry
  84. ATP-Binding Cassette Properties of Recombination Mediator Protein RecF
    Sergey Korolev · 2011 · InTech eBooks
  85. A Recombination Puzzle Solved: Role for New DNA Repair Systems in Helicobacter pylori Diversity/Persistence
    Ge Wang, Robert J. · 2011 · InTech eBooks
  86. The function of recombinations occurring in the process of DNA replication in Escherichia coli
    Vitaly V. Sukhodolets · 2006 · Russian Journal of Genetics
  87. Enzymatic control of homologous recombination and hyperrecombination in Escherichia coli
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  88. The tyrosine recombinase MrpA and its target sequence: a mutational analysis of the recombination site mrpS resulting in a new left element/right element (LE/RE) deletion system
    Lydia Warth, Josef Altenbuchner · 2013 · Archives of Microbiology
  89. Dimeric structure of the N-terminal domain of PriB protein fromThermoanaerobacter tengcongensissolvedab initio
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    Felipe Cortés‐Ledesma, Félix Prado, Andrés Aguilera · 2007 · Topics in current genetics
  91. Protein interactions in T7 DNA replisome inhibit the bypass of abasic site by DNA polymerase
    Zhenyu Zou, Tingting Liang, Zhongyan Xu, Jiayu Xie, Shuming Zhang, Weina Chen, Siqi Wan, Yihui Ling, Huidong Zhang · 2019 · Mutagenesis
  92. Post-Replication Repair
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  93. Preface: Chromosomal Instability and Breast Cancer Pathogenesis
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  94. Zur Funktion des MPH1-Gens von Saccharomyces cerevisiae bei der rekombinativen Umgehung von replikationsarretierenden DNA-Schäden
    Kirsten Anke Schürer · 2004
  95. The Identification of BRCA1 and BRCA2 Mutation Carriers Using Functional Genomic Assays
    Claire S. Michel · 2009 · QSpace (Queen's University Library)
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  97. DNA Metabolism in Mycobacterium tuberculosis: Implications for Drug Resistance and Strain Variability
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  98. Rosa26-GFP Direct Repeat (RaDR-GFP) Mice Reveal Tissue- and Age-Dependence of Homologous Recombination in Mammals In Vivo
    Michelle R. Sukup-Jackson, Orsolya Kiraly (5659234), Jennifer E. Kay, Li Na, Elizabeth A. Rowland, Kelly E. Winther, Danielle N. Chow, Takafumi Kimoto, Tetsuya Matsuguchi, Vidya S. Jonnalagadda et al. · 2016 · Figshare
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  100. Visualization of the complete preprimosome reveals the structural mechanisms governing DNA replication restart
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