Cited by 122

The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.

The lipid kinase PI4KIIIβ preserves lysosomal identity

Sridhar, Sunandini, Patel, Bindi, Aphkhazava, David, Macian, Fernando, Santambrogio, Laura, Shields, Dennis, Cuervo, Ana Maria·2013·The EMBO Journal

Abstract

Lipid modifications are essential in cellular sorting and trafficking inside cells. The role of phosphoinositides in trafficking between Golgi and endocytic/lysosomal compartments has been extensively explored and the kinases responsible for these lipid changes have been identified. In contrast, the mechanisms that mediate exit and recycling from lysosomes (Lys), considered for a long time as terminal compartments, are less understood. In this work, we identify a dynamic association of the lipid kinase PI4KIIIβ with Lys and unveil its regulatory function in lysosomal export and retrieval. We have found that absence of PI4KIIIβ leads to abnormal formation of tubular structures from the lysosomal surface and loss of lysosomal constituents through these tubules. We demonstrate that the kinase activity of PI4KIIIβ is necessary to prevent this unwanted lysosomal efflux under normal conditions, and to facilitate proper sorting when recycling of lysosomal material is needed, such as in the physiological context of lysosomal reformation after prolonged starvation.

Overview

Integrity signals

Registry

Crossref · 10.1038/emboj.2012.341

Cites

3 of 3 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Verification

Claims the paper makes

This paper’s full text isn’t openly available, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 35

  1. Andrews NW (2000) Regulated secretion of conventional lysosomes. Trends Cell Biol 10: 316–321 · DOI
  2. Aniento F, Emans N, Griffiths G, Gruenberg J (1993) Cytoplasmic dynein‐dependent vesicular transport from early to late endosomes. J Cell Biol 123: 1373–1387 · DOI
  3. Balla A, Balla T (2006) Phosphatidylinositol 4‐kinases: old enzymes with emerging functions. Trends Cell Biol 16: 351–361 · DOI
  4. Bandyopadhyay U, Sridhar S, Kaushik S, Kiffin R, Cuervo AM (2010) Identification of regulators of chaperone‐nediated autophagy. Mol Cell 39: 535–547 · DOI
  5. Blagoveshchenskaya A, Cheong FY, Rohde HM, Glover G, Knodler A, Nicolson T, Boehmelt G, Mayinger P (2008) Integration of Golgi trafficking and growth factor signaling by the lipid phosphatase SAC1. J Cell Biol 180: 803–812 · DOI
  6. Boes M, Cerny J, Massol R, Op den Brouw M, Kirchhausen T, Chen J, Ploegh HL (2002) T‐cell engagement of dendritic cells rapidly rearranges MHC class II transport. Nature 418: 983–988 · DOI
  7. Bonifacino JS, Hurley JH (2008) Retromer. Curr Opin Cell Biol 20: 427–436 · DOI · Paper page
  8. Bright NA, Gratian MJ, Luzio JP (2005) Endocytic delivery to lysosomes mediated by concurrent fusion and kissing events in living cells. Curr Biol 15: 360–365 · DOI
  9. Carlton JG, Cullen PJ (2005) Coincidence detection in phosphoinositide signaling. Trends Cell Biol 15: 540–547 · DOI
  10. Chow A, Toomre D, Garrett W, Mellman I (2002) Dendritic cell maturation triggers retrograde MHC class II transport from lysosomes to the plasma membrane. Nature 418: 988–994 · DOI · Paper page
  11. Cuervo AM, Dice JF, Knecht E (1997) A population of rat liver lysosomes responsible for the selective uptake and degradation of cytosolic proteins. J Biol Chem 272: 5606–5615 · DOI
  12. Cullen PJ, Carlton JG (2012) Phosphoinositides in the mammalian endo‐lysosomal network. Subcell Biochem 59: 65–110 · DOI
  13. D'Angelo G, Vicinanza M, Wilson C, De Matteis MA (2012) Phosphoinositides in Golgi complex function. Subcell Biochem 59: 255–270 · DOI
  14. de Barry J, Janoshazi A, Dupont JL, Procksch O, Chasserot‐Golaz S, Jeromin A, Vitale N (2006) Functional implication of neuronal calcium sensor‐1 and phosphoinositol 4‐kinase‐beta interaction in regulated exocytosis of PC12 cells. J Biol Chem 281: 18098–18111 · DOI
  15. Faulhammer F, Kanjilal‐Kolar S, Knodler A, Lo J, Lee Y, Konrad G, Mayinger P (2007) Growth control of Golgi phosphoinositides by reciprocal localization of sac1 lipid phosphatase and pik1 4‐kinase. Traffic 8: 1554–1567 · DOI
  16. Godi A, Di Campli A, Konstantakopoulos A, Di Tullio G, Alessi DR, Kular GS, Daniele T, Marra P, Lucocq JM, De Matteis MA (2004) FAPPs control Golgi‐to‐cell‐surface membrane traffic by binding to ARF and PtdIns(4)P. Nat Cell Biol 6: 393–404 · DOI
  17. Godi A, Pertile P, Meyers R, Marra P, Di Tullio G, Iurisci C, Luini A, Corda D, De Matteis MA (1999a) ARF mediates recruitment of PtdIns‐4‐OH kinase‐beta and stimulates synthesis of PtdIns(4,5)P2 on the Golgi complex. Mol Biol Cell 1: 280–287
  18. Godi A, Pertile P, Meyers R, Marra P, Di Tullio G, Iurisci C, Luini A, Corda D, De Matteis MA (1999b) ARF mediates recruitment of PtdIns‐4‐OH kinase‐beta and stimulates synthesis of PtdIns(4,5)P2 on the Golgi complex. Nat Cell Biol 1: 280–287 · DOI
  19. Jovic M, Kean MJ, Szentpetery Z, Polevoy G, Gingras AC, Brill JA, Balla T (2012) Two phosphatidylinositol 4‐kinases control lysosomal delivery of the Gaucher disease enzyme, beta‐glucocerebrosidase. Mol Biol Cell 23: 1533–1545 · DOI
  20. Koga H, Kaushik S, Cuervo AM (2010) Inhibitory effect of intracellular lipid load on macroautophagy. Autophagy 6: 825–827 · DOI
  21. Lange Y, Ye J, Steck TL (2012) Activation mobilizes the cholesterol in the late endosomes‐lysosomes of Niemann Pick type C cells. PLoS ONE 7: e30051 · DOI
  22. Marzella L, Ahlberg J, Glaumann H (1982) Isolation of autophagic vacuoles from rat liver: morphological and biochemical characterization. J Cell Biol 93: 144–154 · DOI
  23. Miller SE, Collins BM, McCoy AJ, Robinson MS, Owen DJ (2007) A SNARE‐adaptor interaction is a new mode of cargo recognition in clathrin‐coated vesicles. Nature 450: 570–574 · DOI
  24. Minogue S, Waugh MG (2012) The Phosphatidylinositol 4‐Kinases: Don't Call it a Comeback. Subcell Biochem 58: 1–24 · DOI
  25. Polevoy G, Wei HC, Wong R, Szentpetery Z, Kim YJ, Goldbach P, Steinbach SK, Balla T, Brill JA (2009) Dual roles for the Drosophila PI 4‐kinase four wheel drive in localizing Rab11 during cytokinesis. J Cell Biol 187: 847–858 · DOI
  26. Rodriguez‐Navarro JA, Kaushik S, Koga H, Dall'Armi C, Shui G, Wenk MR, Di Paolo G, Cuervo AM (2012) Inhibitory effect of dietary lipids on chaperone‐mediated autophagy. Proc Natl Acad Sci USA 109: E705–E714 · DOI
  27. Rong Y, Liu M, Ma L, Du W, Zhang H, Tian Y, Cao Z, Li Y, Ren H, Zhang C, Li L, Chen S, Xi J, Yu L (2012) Clathrin and phosphatidylinositol‐4,5‐bisphosphate regulate autophagic lysosome reformation. Nat Cell Biol 14: 924–934 · DOI · Paper page
  28. Saftig P, Klumperman J (2009) Lysosome biogenesis and lysosomal membrane proteins: trafficking meets function. Nat Rev Mol Cell Biol 10: 623–635 · DOI · Paper page
  29. Saksena S, Sun J, Chu T, Emr SD (2007) ESCRTing proteins in the endocytic pathway. Trends Biochem Sci 32: 561–573 · DOI
  30. Salazar G, Zlatic S, Craige B, Peden AA, Pohl J, Faundez V (2009) Hermansky‐Pudlak syndrome protein complexes associate with phosphatidylinositol 4‐kinase type II alpha in neuronal and non‐neuronal cells. J Biol Chem 284: 1790–1802 · DOI
  31. Storrie B, Madden E (1990) Isolation of subcellular organelles. Methods Enzymol 182: 203–225 · DOI · Paper page
  32. Sweeney DA, Siddhanta A, Shields D (2002) Fragmentation and re‐assembly of the Golgi apparatus in vitro. A requirement for phosphatidic acid and phosphatidylinositol 4,5‐bisphosphate synthesis. J Biol Chem 277: 3030–3039 · DOI
  33. Szentpetery Z, Varnai P, Balla T (2010) Acute manipulation of Golgi phosphoinositides to assess their importance in cellular trafficking and signaling. Proc Natl Acad Sci USA 107: 8225–8230 · DOI
  34. Wieffer M, Haucke V, Krauss M (2012) Regulation of phosphoinositide‐metabolizing enzymes by clathrin coat proteins. Methods Cell Biol 108: 209–225 · DOI
  35. Yang N, Ma P, Lang J, Zhang Y, Deng J, Ju X, Zhang G, Jiang C (2012) Phosphatidylinositol 4‐kinase IIIbeta is required for severe acute respiratory syndrome coronavirus spike‐mediated cell entry. J Biol Chem 287: 8457–8467 · DOI

Cited by

Sorted by citations

Metadata

Authors
Sridhar, S., Patel, B., Aphkhazava, D., Macian, F., Santambrogio, L., Shields, D., & Cuervo, A. M.
Venue
The EMBO Journal
Published
2012-12-21
Volume
32
Issue
3
Pages
324-339
ISSN
  • 0261-4189
  • 1460-2075
Cited by
122
References
3
Language
en

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review