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Retromer

Bonifacino, Juan S, Hurley, James H·2008·Current Opinion in Cell Biology
DOI 10.1016/j.ceb.2008.03.009
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Crossref · 10.1016/j.ceb.2008.03.009

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  • VPS35 regulates retromer assembly, stability, and cargo recognition.

    “A key component of the retromer complex is VPS35, which regulates its assembly, stability, and cargo recognition [6].”

    From Stabilizing the retromer complex rescues synaptic dysfunction and endosomal trafficking deficits in an Alzheimer’s disease mouse model (2025) · cites this paper as [6]

    The Introduction (page unavailable) describes Vps35 binding Vps26 and Vps29, and reports cargo binding to Vps35, supporting its roles in retromer assembly and cargo recognition. It does not establish that Vps35 regulates retromer stability; the discussion of complex stability points instead to possible stabilization by cargo tails. (LLM, conf=0.86)

    Experimental — accuracy not yet measured

  • The retromer contains two subprotein complexes: the cargo-selective subcomplex and membrane deformation subcomplex.

    “The retromer contains two subprotein complexes: the cargo-selective subcomplex and membrane deformation subcomplex (Seaman, 2005; Bonifacino and Hurley, 2008).”

    From VPS35 haploinsufficiency increases Alzheimer’s disease neuropathology (2011) · cites this paper as Bonifacino and Hurley, 2008

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Research works printed but not linked: 81

  1. Seaman, 2005, Recycle your receptors with retromer, Trends Cell Biol, 15, 68, 10.1016/j.tcb.2004.12.004 · DOI · Paper page
  2. Bonifacino, 2006, Retrograde transport from endosomes to the trans-Golgi network, Nat Rev Mol Cell Biol, 7, 568, 10.1038/nrm1985 · DOI
  3. Verges, 2007, Retromer and sorting nexins in development, Front Biosci, 12, 3825, 10.2741/2355 · DOI
  4. Horazdovsky, 1997, A sorting nexin-1 homologue, Vps5p, forms a complex with Vps17p and is required for recycling the vacuolar protein-sorting receptor, Mol Biol Cell, 8, 1529, 10.1091/mbc.8.8.1529 · DOI
  5. Seaman, 1998, A membrane coat complex essential for endosome-to-Golgi retrograde transport in yeast, J Cell Biol, 142, 665, 10.1083/jcb.142.3.665 · DOI · Paper page
  6. Arighi, 2004, Role of the mammalian retromer in sorting of the cation-independent mannose 6-phosphate receptor, J Cell Biol, 165, 123, 10.1083/jcb.200312055 · DOI · Paper page
  7. Carlton, 2004, Sorting nexin-1 mediates tubular endosome-to-TGN transport through coincidence sensing of high- curvature membranes and 3-phosphoinositides, Curr Biol, 14, 1791, 10.1016/j.cub.2004.09.077 · DOI · Paper page
  8. Seaman, 2004, Cargo-selective endosomal sorting for retrieval to the Golgi requires retromer, J Cell Biol, 165, 111, 10.1083/jcb.200312034 · DOI · Paper page
  9. Griffin, 2005, Genetic evidence for a mammalian retromer complex containing sorting nexins 1 and 2, Proc Natl Acad Sci U S A, 102, 15173, 10.1073/pnas.0409558102 · DOI
  10. Rojas, 2007, Interchangeable but essential functions of SNX1 and SNX2 in the association of retromer with endosomes and the trafficking of mannose 6-phosphate receptors, Mol Cell Biol, 27, 1112, 10.1128/MCB.00156-06 · DOI
  11. Utskarpen, 2007, SNX1 and SNX2 mediate retrograde transport of Shiga toxin, Biochem Biophys Res Commun, 358, 566, 10.1016/j.bbrc.2007.04.159 · DOI
  12. Liu, 2006, Inhibitory regulation of EGF receptor degradation by sorting nexin 5, Biochem Biophys Res Commun, 342, 537, 10.1016/j.bbrc.2006.01.179 · DOI
  13. Wassmer, 2007, A loss-of-function screen reveals SNX5 and SNX6 as potential components of the mammalian retromer, J Cell Sci, 120, 45, 10.1242/jcs.03302 · DOI
  14. Cozier, 2002, The phox homology (PX) domain-dependent, 3-phosphoinositide-mediated association of sorting nexin-1 with an early sorting endosomal compartment is required for its ability to regulate epidermal growth factor receptor degradation, J Biol Chem, 277, 48730, 10.1074/jbc.M206986200 · DOI · Paper page
  15. Zhong, 2002, Endosomal localization and function of sorting nexin 1, Proc Natl Acad Sci U S A, 99, 6767, 10.1073/pnas.092142699 · DOI
  16. Merino-Trigo, 2004, Sorting nexin 5 is localized to a subdomain of the early endosomes and is recruited to the plasma membrane following EGF stimulation, J Cell Sci, 117, 6413, 10.1242/jcs.01561 · DOI
  17. Worby, 2002, Sorting out the cellular functions of sorting nexins, Nat Rev Mol Cell Biol, 3, 919, 10.1038/nrm974 · DOI · Paper page
  18. Carlton, 2005, Sorting nexins, Curr Biol, 15, R819, 10.1016/j.cub.2005.10.012 · DOI · Paper page
  19. Zhong, 2005, Determinants of the endosomal localization of sorting nexin 1, Mol Biol Cell, 16, 2049, 10.1091/mbc.e04-06-0504 · DOI
  20. Carlton, 2005, Sorting nexin-2 is associated with tubular elements of the early endosome, but is not essential for retromer-mediated endosome-to-TGN transport, J Cell Sci, 118, 4527, 10.1242/jcs.02568 · DOI
  21. Gullapalli, 2004, A role for sorting nexin 2 in epidermal growth factor receptor down-regulation: evidence for distinct functions of sorting nexin 1 and 2 in protein trafficking, Mol Biol Cell, 15, 2143, 10.1091/mbc.e03-09-0711 · DOI
  22. Gallop, 2005, BAR domains and membrane curvature: bringing your curves to the BAR, Biochem Soc Symp, 223
  23. Itoh, 2006, BAR, F-BAR (EFC) and ENTH/ANTH domains in the regulation of membrane-cytosol interfaces and membrane curvature, Biochim Biophys Acta, 1761, 897, 10.1016/j.bbalip.2006.06.015 · DOI · Paper page
  24. Pylypenko, 2007, The PX-BAR membrane-remodeling unit of sorting nexin 9, EMBO J, 26, 4788, 10.1038/sj.emboj.7601889 · DOI
  25. Kerr, 2005, A novel mammalian retromer component, Vps26B, Traffic, 6, 991, 10.1111/j.1600-0854.2005.00328.x · DOI · Paper page
  26. Shi, 2006, The retromer subunit Vps26 has an arrestin fold and binds Vps35 through its C-terminal domain, Nat Struct Mol Biol, 13, 540, 10.1038/nsmb1103 · DOI
  27. Collins, 2007, Structure of Vps26B and mapping of its interaction with the retromer protein complex, Traffic
  28. Hierro, 2007, Functional architecture of the retromer cargo-recognition complex, Nature, 449, 1063, 10.1038/nature06216 · DOI · Paper page
  29. Wang, 2005, Crystal structure of human vacuolar protein sorting protein 29 reveals a phosphodiesterase/nuclease-like fold and two protein–protein interaction sites, J Biol Chem, 280, 22962, 10.1074/jbc.M500464200 · DOI
  30. Collins, 2005, Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer assembly, Nat Struct Mol Biol, 12, 594, 10.1038/nsmb954 · DOI
  31. Heldwein, 2004, Crystal structure of the clathrin adaptor protein 1 core, Proc Natl Acad Sci U S A, 101, 14108, 10.1073/pnas.0406102101 · DOI
  32. Collins, 2002, Molecular architecture and functional model of the endocytic AP2 complex, Cell, 109, 523, 10.1016/S0092-8674(02)00735-3 · DOI · Paper page
  33. ter Haar, 1998, Atomic structure of clathrin: a beta propeller terminal domain joins an alpha zigzag linker, Cell, 95, 563, 10.1016/S0092-8674(00)81623-2 · DOI
  34. Ybe, 1999, Clathrin self-assembly is mediated by a tandemly repeated superhelix, Nature, 399, 371, 10.1038/20708 · DOI
  35. Gokool, 2007, Identification of a conserved motif required for Vps35p/Vps26p interaction and assembly of the retromer complex, Biochem J, 408, 287, 10.1042/BJ20070555 · DOI
  36. Restrepo, 2007, Structural features of vps35p involved in interaction with other subunits of the retromer complex, Traffic, 8, 1841, 10.1111/j.1600-0854.2007.00659.x · DOI
  37. Zhao, 2007, Dominant-negative behavior of mammalian Vps35 in yeast requires a conserved PRLYL motif involved in retromer assembly, Traffic, 8, 1829, 10.1111/j.1600-0854.2007.00658.x · DOI
  38. Nothwehr, 1999, Distinct domains within Vps35p mediate the retrieval of two different cargo proteins from the yeast prevacuolar/endosomal compartment, Mol Biol Cell, 10, 875, 10.1091/mbc.10.4.875 · DOI
  39. Nothwehr, 2000, Sorting of yeast membrane proteins into an endosome-to-Golgi pathway involves direct interaction of their cytosolic domains with Vps35p, J Cell Biol, 151, 297, 10.1083/jcb.151.2.297 · DOI
  40. Seaman, 2002, Identification of the functional domains of yeast sorting nexins Vps5p and Vps17p, Mol Biol Cell, 13, 2826, 10.1091/mbc.02-05-0064 · DOI · Paper page
  41. Haft, 2000, Human orthologs of yeast vacuolar protein sorting proteins Vps26, 29, and 35: assembly into multimeric complexes, Mol Biol Cell, 11, 4105, 10.1091/mbc.11.12.4105 · DOI · Paper page
  42. Frost, 2008, Structural basis of membrane invagination by F-BAR domains, Cell, 132, 807, 10.1016/j.cell.2007.12.041 · DOI
  43. Nakada-Tsukui, 2005, A retromerlike complex is a novel Rab7 effector that is involved in the transport of the virulence factor cysteine protease in the enteric protozoan parasite Entamoeba histolytica, Mol Biol Cell, 16, 5294, 10.1091/mbc.e05-04-0283 · DOI
  44. Peden, 2004, Localization of the AP-3 adaptor complex defines a novel endosomal exit site for lysosomal membrane proteins, J Cell Biol, 164, 1065, 10.1083/jcb.200311064 · DOI
  45. Mari, 2007, SNX1 defines an early endosomal recycling exit for sortilin and mannose 6-phosphate receptors, Traffic
  46. Cooper, 1996, Vps10p cycles between the late-Golgi and prevacuolar compartments in its function as the sorting receptor for multiple yeast vacuolar hydrolases, J Cell Biol, 133, 529, 10.1083/jcb.133.3.529 · DOI
  47. Nothwehr, 1993, Membrane protein retention in the yeast Golgi apparatus: dipeptidyl aminopeptidase A is retained by a cytoplasmic signal containing aromatic residues, J Cell Biol, 121, 1197, 10.1083/jcb.121.6.1197 · DOI
  48. Seaman, 2007, Identification of a novel conserved sorting motif required for retromer-mediated endosome-to-TGN retrieval, J Cell Sci, 120, 2378, 10.1242/jcs.009654 · DOI
  49. Nielsen, 2007, Sorting by the cytoplasmic domain of the amyloid precursor protein binding receptor SorLA, Mol Cell Biol, 27, 6842, 10.1128/MCB.00815-07 · DOI · Paper page
  50. Bonifacino, 2003, Signals for sorting of transmembrane proteins to endosomes and lysosomes, Annu Rev Biochem, 72, 395, 10.1146/annurev.biochem.72.121801.161800 · DOI · Paper page
  51. Strochlic, 2007, Grd19/Snx3p functions as a cargo-specific adapter for retromer-dependent endocytic recycling, J Cell Biol, 177, 115, 10.1083/jcb.200609161 · DOI · Paper page
  52. Gokool, 2007, EHD1 interacts with retromer to stabilize SNX1 tubules and facilitate endosome-to-Golgi retrieval, Traffic, 8, 1873, 10.1111/j.1600-0854.2007.00652.x · DOI · Paper page
  53. Caplan, 2002, A tubular EHD1-containing compartment involved in the recycling of major histocompatibility complex class I molecules to the plasma membrane, EMBO J, 21, 2557, 10.1093/emboj/21.11.2557 · DOI · Paper page
  54. Daumke, 2007, Architectural and mechanistic insights into an EHD ATPase involved in membrane remodeling, Nature, 449, 923, 10.1038/nature06173 · DOI · Paper page
  55. Lin, 2001, Rme-1 regulates the distribution and function of the endocytic recycling compartment in mammalian cells, Nat Cell Biol, 3, 567, 10.1038/35078543 · DOI · Paper page
  56. Shimada, 2006, AtVPS29, a putative component of a retromer complex, is required for the efficient sorting of seed storage proteins, Plant Cell Physiol, 47, 1187, 10.1093/pcp/pcj103 · DOI
  57. Fuji, 2007, Arabidopsis vacuolar sorting mutants (green fluorescent seed) can be identified efficiently by secretion of vacuole-targeted green fluorescent protein in their seeds, Plant Cell, 19, 597, 10.1105/tpc.106.045997 · DOI
  58. Belenkaya, 2007, The retromer complex influences Wnt secretion by recycling Wntless from endosomes to the trans-Golgi network, Dev Cell
  59. Pan, 2008, C. elegans AP-2 and retromer control Wnt signaling by regulating MIG-14/Wntless, Dev Cell, 14, 132, 10.1016/j.devcel.2007.12.001 · DOI
  60. Yang, 2008, Wnt signaling requires retromer-dependent recycling of MIG-14/Wntless in Wnt-producing cells, Dev Cell, 14, 140, 10.1016/j.devcel.2007.12.004 · DOI
  61. Prasad, 2006, Wnt signaling establishes anteroposterior neuronal polarity and requires retromer in C. elegans, Development, 133, 1757, 10.1242/dev.02357 · DOI
  62. Coudreuse, 2006, Wnt gradient formation requires retromer function in Wnt-producing cells, Science, 312, 921, 10.1126/science.1124856 · DOI
  63. George, 2007, The vacuolar-ATPase inhibitor bafilomycin and mutant VPS35 inhibit canonical Wnt signaling, Neurobiol Dis, 26, 125, 10.1016/j.nbd.2006.12.004 · DOI
  64. Franch-Marro, 2008, Wingless secretion requires endosome-to-Golgi retrieval of Wntless/Evi/Sprinter by the retromer complex, Nat Cell Biol, 10, 170, 10.1038/ncb1678 · DOI
  65. Port, 2008, Wingless secretion promotes and requiresretromer-dependent cycling of Wntless, Nat Cell Biol, 10.1038/ncb1687 · DOI
  66. Hettema, 2003, Retromer and the sorting nexins Snx4/41/42 mediate distinct retrieval pathways from yeast endosomes, EMBO J, 22, 548, 10.1093/emboj/cdg062 · DOI
  67. Jaillais, 2006, AtSNX1 defines an endosome for auxin-carrier trafficking in Arabidopsis, Nature, 443, 106, 10.1038/nature05046 · DOI
  68. Jaillais, 2007, The retromer protein VPS29 links cell polarity and organ initiation in plants, Cell, 130, 1057, 10.1016/j.cell.2007.08.040 · DOI
  69. Bujny, 2007, The retromer component sorting nexin-1 is required for efficient retrograde transport of Shiga toxin from early endosome to the trans Golgi network, J Cell Sci, 120, 2010, 10.1242/jcs.003111 · DOI
  70. Popoff, 2007, The retromer complex and clathrin define an early endosomal retrograde exit site, J Cell Sci, 120, 2022, 10.1242/jcs.003020 · DOI
  71. Small, 2005, Model-guided microarray implicates the retromer complex in Alzheimer's disease, Ann Neurol, 58, 909, 10.1002/ana.20667 · DOI · Paper page
  72. Scherzer, 2004, Loss of apolipoprotein E receptor LR11 in Alzheimer disease, Arch Neurol, 61, 1200, 10.1001/archneur.61.8.1200 · DOI · Paper page
  73. Andersen, 2005, Neuronal sorting protein-related receptor sorLA/LR11 regulates processing of the amyloid precursor protein, Proc Natl Acad Sci U S A, 102, 13461, 10.1073/pnas.0503689102 · DOI · Paper page
  74. Offe, 2006, The lipoprotein receptor LR11 regulates amyloid beta production and amyloid precursor protein traffic in endosomal compartments, J Neurosci, 26, 1596, 10.1523/JNEUROSCI.4946-05.2006 · DOI · Paper page
  75. Verges, 2004, The mammalian retromer regulates transcytosis of the polymeric immunoglobulin receptor, Nat Cell Biol, 6, 763, 10.1038/ncb1153 · DOI
  76. Verges, 1999, A tubular endosomal fraction from rat liver: biochemical evidence of receptor sorting by default, Proc Natl Acad Sci U S A, 96, 10146, 10.1073/pnas.96.18.10146 · DOI
  77. Saksena, 2007, ESCRTing proteins in the endocytic pathway, Trends Biochem Sci, 32, 561, 10.1016/j.tibs.2007.09.010 · DOI
  78. Hurley, 2008, ESCRT complexes and the biogenesis of multivesicular bodies, Curr Opin Cell Biol, 20, 4, 10.1016/j.ceb.2007.12.002 · DOI
  79. Edeling, 2006, Life of a clathrin coat: insights from clathrin and AP structures, Nat Rev Mol Cell Biol, 7, 32, 10.1038/nrm1786 · DOI
  80. Verges, 2007, Phosphoinositide 3-kinase regulates the role of retromer in transcytosis of the polymeric immunoglobulin receptor, Exp Cell Res, 313, 707, 10.1016/j.yexcr.2006.11.010 · DOI
  81. Korolchuk, 2007, Drosophila Vps35 function is necessary for normal endocytic trafficking and actin cytoskeleton organisation, J Cell Sci, 120, 4367, 10.1242/jcs.012336 · DOI · Paper page

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Metadata

Authors
Bonifacino, J. S., & Hurley, J. H.
Venue
Current Opinion in Cell Biology
Publisher
Elsevier BV
Published
2008-08
Volume
20
Issue
4
Pages
427-436
ISSN
0955-0674
DOI
10.1016/j.ceb.2008.03.009
Cited by
449
References
1
Language
en
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