Cited by 1,109Epigenetics and DNA MethylationGenomics and Chromatin DynamicsGenetic Syndromes and Imprinting

The DOI matches its Crossref record; 119 of the 119 references it cites were found in a registry or an index.

Epigenetics and gene expression

Open access

Gibney, E R, Nolan, C M·2010·Heredity

DOI 10.1038/hdy.2010.54

Open this paper in CoChat — free account Open PDF

Abstract

Transcription, translation and subsequent protein modification represent the transfer of genetic information from the archival copy of DNA to the short-lived messenger RNA, usually with subsequent production of protein. Although all cells in an organism contain essentially the same DNA, cell types and functions differ because of qualitative and quantitative differences in their gene expression. Thus, control of gene expression is at the heart of differentiation and development. Epigenetic processes, including DNA methylation, histone modification and various RNA-mediated processes, are thought to influence gene expression chiefly at the level of transcription; however, other steps in the process (for example, translation) may also be regulated epigenetically. The following paper will outline the role epigenetics is believed to have in influencing gene expression.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

Integrity signals

Registry

Crossref · 10.1038/hdy.2010.54

Cites

119 of 119 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

1 retracted

Noncoding RNAs of Trithorax Response Elements Recruit Drosophila Ash1 to Ultrabithorax
Sánchez-Elsner, T., Gou, D., Kremmer, E., & Sauer, F. (2006) · Science · doi:10.1126/science.1117705 · Cited by 236
Retracted
MicroRNAs: Target Recognition and Regulatory Functions
Bartel, D. P. (2009) · Cell · doi:10.1016/j.cell.2009.01.002 · Cited by 20,068
Chromatin modifications and their function
Kouzarides, T. (2007) · Cell · doi:10.1016/j.cell.2007.02.005 · Cited by 10,883
Molecular Biology of the Cell
Alberts, B., Johnson, A., Lewis, J. H., Morgan, D. O., RAFF, M. C., Roberts, K. J., & Walter, P. (2017) · W.W. Norton eBooks · doi:10.1201/9781315735368 · Cited by 7,937
High-Resolution Profiling of Histone Methylations in the Human Genome
Barski, A., Cuddapah, S., Cui, K., Roh, T.-Y., Schones, D. E., Wang, Z., Wei, G., Chepelev, I., & Zhao, K. (2007) · Cell · doi:10.1016/j.cell.2007.05.009 · Cited by 6,845
Origins and Mechanisms of miRNAs and siRNAs
Carthew, R. W., & Sontheimer, E. J. (2009) · Cell · doi:10.1016/j.cell.2009.01.035 · Cited by 5,161
Molecular Biology of the Cell
Alberts, B., Johnson, A. D., Lewis, J. H., RAFF, M. C., Roberts, K. J., & Walter, P. (2007) · W.W. Norton eBooks · doi:10.1201/9780203833445 · Cited by 4,591
Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs
Rinn, J. L., Kertesz, M., Wang, J. K., Squazzo, S. L., Xu, X. H., Brugmann, S. A., Goodnough, L. H., Helms, J. A., Farnham, P., Segal, E., et al. (2007) · Cell · doi:10.1016/j.cell.2007.05.022 · Cited by 4,246
Evolution and Functions of Long Noncoding RNAs
Ponting, C. P., Oliver, P. L., & Reik, W. (2009) · Cell · doi:10.1016/j.cell.2009.02.006 · Cited by 4,208
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
Mikkelsen, T. S., Ku, M., Jaffe, D. B., Issac, B., Lieberman, E., Giannoukos, G., Alvarez, P., Brockman, W., Kim, T.-K., Koche, R. P., et al. (2007) · Nature · doi:10.1038/nature06008 · Cited by 4,129

Show all 119 references

Research works printed but not linked: 2

Allis CD, Jenuwein T, Reinberg D (2007). Overview and concepts. In: Allis CD, Jenuwein T, Reinberg D (eds). Epigenetics. CSHL Press: New York. pp 23–61.
Kouzarides T, Berger SL (2007). Chromatin modifications and their mechanism of action. In: Allis CD, Jenuwein T, Reinberg D (eds). Epigenetics. CSHL Press: New York. pp 191–209.

Sorted by citations

Items 901–999 of 999

Bioavailability and Modes of Action of Novel Metal Based Phenanthroline Drugs
O’Leary, T. (2021) · Arrow - TU Dublin (Technological University Dublin) · doi:10.21427/7sw6-vk06
Epigenetics and familial mediterranean fever
Lotfy, R. S., Ali, O. S. M., Zarouk, W. A., El-Bassyouni, H. T., & Eldeen, G. N. (2021) · Azhar International Journal of Pharmaceutical and Medical Sciences/Azhar International Journal of Pharmaceutical and Medical Sciences · doi:10.21608/aijpms.2021.63099.1047
Germ cells: ENCODE’s forgotten cell type
McCarrey, J. R., & Cheng, K. (2021) · Biology of Reproduction · doi:10.1093/biolre/ioab135
“These concepts have emerged from decades of research describing epigenetic mechanisms that impact gene transcription [12].”
Background
Epigenetic insights for wound healing mechanism
Sharma, A. K., Kalonia, A., Shaw, P., & Shukla, S. K. (2021) · Elsevier eBooks · doi:10.1016/b978-0-323-85652-2.00016-6
Multi ’omics integration of the HIV airway epithelium : integration of the microbiome, transcriptome and methylome
Jude, M. S. (2021) · cIRcle (University of British Columbia) · doi:10.14288/1.0402634
Obesity epigenetics and exercise
Foster, S. S. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-820682-9.00015-3
Mature Neurons’ sensitivity to oxidative stress is epigenetically programmed by alternative splicing and mRNA stabilityPreprint
Zhou, Y., Rashad, S., Tominaga, T., & Niizuma, K. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.12.25.472549
Identificação de um novo conjunto de biomarcadores para predição do curso da infecção pelo Mycobacterium tuberculosis
Lima, F. T. (2021) · Digital Library of Theses and Dissertations (Universidade de São Paulo) · doi:10.11606/t.60.2021.tde-26112021-165017
Epigenetic Mechanism of TGF-β1 Promoting Osteogenic Differentiation of Human Bone Marrow Mesenchymal Stem Cells in OsteoarthritisPreprint
He, J., Cao, W., Fang, Q., Azeem, I., & Liu, W. Y. (2021) · Research Square · doi:10.21203/rs.3.rs-732375/v1
References
(2021) · Elsevier eBooks · doi:10.1016/b978-0-12-816983-4.00003-1
Association Analysis Using Set-Based Approaches in the Post-GWAS Era
Yasmeen, S. (2021) · eDiss (Georg-August-Universität Göttingen) · doi:10.53846/goediss-9044
High-dimension to high-dimension screening for detecting genome-wide epigenetic regulators of gene expressionPreprint
Ke, H., Ren, Z., Chen, S., Tseng, G. C., Qi, J., & Ma, T. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.02.21.481160
“Epigenetic alterations are inheritable traits that impact gene activity not involving changes in the DNA sequences (Gibney and Nolan, 2010).”
Background
A Holistic Approach to Understanding Epigenetics, its Mechanisms and Effects in the Biological System
Ganguly, S. (2022) · ACTA SCIENTIFIC MICROBIOLOGY · doi:10.31080/asmi.2022.05.1014
Identification of molecular subtypes of chronic obstructive pulmonary disease by gene expression profilingPreprint
zhangpingan, 张., Gao, N., Li, X., Ji, G., & Wu, J. (2022) · Research Square · doi:10.21203/rs.3.rs-1540944/v1
Adenosina quinase regula a metilação do DNA de genes envolvidos no neurodesenvolvimento
de Sousa, I. L. (2017) · doi:10.47749/t/unicamp.2017.986359
Adverse effects of nicotine on endometrium receptivity markers: and protective effect of caffeic acid phenyl esterPreprint
Namdari, A., Mohammadian, F., Khajeh, F., Kavousipour, S., & Miladpour, B. (2020) · doi:10.21203/rs.3.rs-30590/v1
“DNA methylation, histone modi cation, and diverse RNA-mediated processes are important epigenetic processes that regulate gene expression [55].”
Background
Identification of molecular subtypes of chronic obstructive pulmonary disease by gene expression profilingPreprint
Pingan, 张. Z., Gao, N., Li, X., Ji, G., & Wu, J. (2022) · Research Square · doi:10.21203/rs.3.rs-1540944/v2
DNA Methylation Analysis Identifies Patterns in Progressive Glioma Grades to Predict Patient Survival
Weng, J. Y. (2021) · doi:10.46569/20.500.12680/9w032825c
The correlation between promoter methylation status and expression of KLF9 and MYH11 in SchizophreniaPreprint
Davarinejad, O., Foruzandeh, Z., Golmohammadi, F., Alivand, M. R., Rahmati, Y., & Akhavan‐Sigari, R. (2022) · Research Square · doi:10.21203/rs.3.rs-1802640/v1
Associação da metilação de genes e o desenvolvimento de arritmias cardíacas em indivíduos sob tratamento com antidepressivos e antipsicóticos
Nascimento, L. V. (2022) · doi:10.11606/t.9.2022.tde-29072022-154307
TIMP3 Gene Upstream CpG Island Methylation is Associated with BRAF V600E Mutation in Thyroid NeoplasmsPreprint
Zarkesh, M., Arab, N., Heydarzadeh, S., Nozhat, Z., Abooshahab, R., Jahromi, M. S., Fanaei, S. A., & Hedayati, M. (2022) · Research Square · doi:10.21203/rs.3.rs-2028260/v1
TARGETING DNA METHYLATION ON TRANSGENERATIONAL CONSEQUENCES OF PRENATAL STRESS-INDUCED DEPRESSION
Kurnianingsih, N. (2022) · Journal of Psychiatry Psychology and Behavioral Research · doi:10.21776/ub.jppbr.2022.003.02.8
Epigenetic therapy and DNA damage response
Baretti, M., & Azad, N. S. (2022) · Elsevier eBooks · doi:10.1016/b978-0-323-91081-1.00009-1
Crosstalk between Maternal Life and Fetal Epigenome; A Review Article
Mahgoub, S., Abosalem, H., Mahmoud, D., Abdel-Mohsen, D. M., & Abd-eltwab, Z. (2022) · Journal of Advanced Pharmacy Research · doi:10.21608/aprh.2022.144865.1181
Transcriptome-guided optimization of in vitro culture conditions to study microglia in health and disease
Timmerman, R. (2022) · Utrecht University Repository (Utrecht University) · doi:10.33540/1603
Plant Transcriptomics: Data-driven Global Approach to Understand Cellular Processes and Their Regulation in Model and Non-Model Plants
Kitazumi, A., Pabuayon, I. C. M., Cushman, K. R., Yano, K., & Reyes, B. G. D. L. (2022) · CABI eBooks · doi:10.1079/9781789247534.0002 · Cited by 1
Biological Processes of Resilience
Grossman, M. (2022) · Springer eBooks · doi:10.1007/978-3-031-06101-1_4
Molecular markers in ovaries of female pigs with different levels of welfare, in the pre-mating period
da Silva, A. N. (2021) · Digital Library of Theses and Dissertations (Universidade de São Paulo) · doi:10.11606/d.10.2021.tde-18112022-110104
Understanding the Code of Life: Holistic Conceptual Modeling of the Genome
Alberto García, S. (2022) · doi:10.4995/thesis/10251/191432
Investigating the genetics of equine endocrine dysfunction
Cash, C. M. (2023) · Queensland University of Technology · doi:10.5204/thesis.eprints.238537
Impaired ATF3 Signaling Involves SNAP25 in SOD1 Mutant ALS PatientsPreprint
Yazar, V., Kühlwein, J. K., Knehr, A., Grozdanov, V., Ekici, A. B., Ludoplph, A. C., & Danzer, K. M. (2023) · Research Square · doi:10.21203/rs.3.rs-2672952/v1
Histone Arginine Methylation in the Freeze-tolerant Wood Frog, Rana sylvatica
Naranjo, M. (2022) · doi:10.22215/etd/2022-15440
Breast cancer epigenetics: comprehensive investigation of genes and chemical compounds involved in active DNA demethylationPreprint
Linowiecka, K., Guz, J., Dziaman, T., Urbanowska–Domańska, O., Zarakowska, E., Szpila, A., Szpotan, J., Skalska-Bugała, A., Mijewski, P., Siomek, A., et al. (2023) · Research Square · doi:10.21203/rs.3.rs-2778971/v1
Zebrafish as a Biomedical Model to Define Developmental Origins of Chemical Toxicity
Freeman, J. L. (2023) · Springer eBooks · doi:10.1007/978-981-19-7834-0_12
Epigenetic regulation: Histone modifying enzymes as targets for novel therapeutics
Dietrich, N., & Archer, T. (2023) · Elsevier eBooks · doi:10.1016/b978-0-12-824010-6.00067-8
Genetic determinants of 25-hydroxyvitamin D concentrations
Hyppönen, E., Zhou, A., & Vimaleswaran, K. S. (2023) · Elsevier eBooks · doi:10.1016/b978-0-323-91338-6.00010-0
KDM5B as a potential epigenetic regulator of cardiomyocyte regeneration and cell cycle activation.
Hammouri, D. (2023) · doi:10.18297/etd/4148
Caracterização epigenética nos núcleos respiratórios no modelo animal 6-OHDA da doença de Parkinson.
Villela, I. Z. (2023) · Digital Library of Theses and Dissertations (Universidade de São Paulo) · doi:10.11606/d.42.2023.tde-13122023-155346
eLife Assessment: Predicting the effect of CRISPR-Cas9-based epigenome editing
Khalil, A. S. (2023) · eLife · doi:10.7554/elife.92991.1.sa2
Biomedical and public health studies on susceptibility to post-traumatic stress disorder
Jowf, G. I. A. (2023) · Research Publications (Maastricht University) · doi:10.26481/dis.20230906ga
Insights into genetic predisposition of somatic cancers
Sharma, A. R., Suroy, B., Sinha, S., Batra, G., Jain, A. K., Dhir, N., Singh, A. K., Singh, R. S., Prajapat, M., Prakash, A., et al. (2024) · Elsevier eBooks · doi:10.1016/b978-0-323-95116-6.00021-9
Biological Prescience: The Role of Anticipation in Organismal DesignPreprint
Deans, C. (2024) · doi:10.22541/au.170664603.30714038/v1
Genome-wide identification of histone lysine methyltransferases and their implications in the epigenetic regulation of eggshell formation-related genes in a trematode parasite Clonorchis sinensis
Park, M.-J., Sohn, W., & Bae, Y. (2024) · Parasites Hosts and Diseases · doi:10.3347/phd.23116
“The chromosomal events are also implicated in maintaining the integrity and stability of gene expression profiles in the resulting variants [5,6].”
Background
Transcriptional signatures in the rat medial prefrontal cortex associated with vulnerability and resilience across distinct phases of opioid use disorderPreprint
Liu, S. X., Muelken, P., Maxim, Z. L., Ramakrishnan, A., Estill, M. S., LeSage, M. G., Smethells, J. R., Shen, L., Tran, P. V., Harris, A. C., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.02.29.582799
Formation of cognitive processes in children with autism. Part I. Epigenetic mechanisms
Glotov, O. S., Chernov, A. N., Suchko, P. A., Eismont, Y. A., & Mayorova, L. A. (2024) · Rossiyskiy Vestnik Perinatologii i Pediatrii (Russian Bulletin of Perinatology and Pediatrics) · doi:10.21508/1027-4065-2024-69-1-34-44
Research Progress of Epigenetics in Liver Cancer
Fu, S., & Guo, M. (2024) · Journal of Cancer Therapy · doi:10.4236/jct.2024.153008
Additional file 1 of DeepAutoGlioma: a deep learning autoencoder-based multi-omics data integration and classification tools for glioma subtyping
Munquad, S., & Das, A. B. (2023) · Figshare · doi:10.6084/m9.figshare.24571716
i C h IP ‐ SILAC analysis identifies epigenetic regulators of C p G methylation of the p16 INK4A gene
Fujita, T., & Fujii, H. (2024) · FEBS Letters · doi:10.1002/1873-3468.14878
“Gene expression is ﬁnely regulated by epigenetic mechanisms including DNA and/or histone modiﬁcations [e.g., transcriptional silencing by DNA (CpG) methylation and transcriptional activation by H3K4me1 and H3K27ac] [1].”
Background
Comprehensive Analysis of Epigenetic Modifications in Alfalfa Under Cadmium StressPreprint
Li, M., Li, X., Liu, H., He, F., Li, M., Long, R., Wang, X., Kang, J., & Yang, Q. (2024) · SSRN Electronic Journal · doi:10.2139/ssrn.4863224
Development of a rapid mass spectrometric method for the analysis of ten-eleven translocation enzymes
Graves, C., & Islam, K. (2024) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/bs.mie.2024.06.001
Imaging of cells: cell injury, death, and adaptation
Youn, H., Lee, S., Park, P.-G., & Hong, K.-J. (2024) · Elsevier eBooks · doi:10.1016/b978-0-323-95223-1.00021-7
Effects of long-term meditation on the expression of genes related to inflammation and their methylation status: A case-control studyPreprint
Dasanayaka, N. N., Sirisena, N. D., & Samaranayake, N. (2024) · Research Square · doi:10.21203/rs.3.rs-4456071/v1
Epigenetics and Transmissible Diseases
Kamel, M. S., Davidson, J., Munds, R. A., Wang, J., Kaur, S., Kumar, V., & Verma, M. S. (2024) · Elsevier eBooks · doi:10.1016/b978-0-443-28818-0.00013-6
Personalized epigenetics of DNA methylation in cancer
Adamopoulos, P. G., Tsiakanikas, P., & Scorilas, A. (2024) · Elsevier eBooks · doi:10.1016/b978-0-443-23802-4.00028-4
Introduction to microbial genomics
Hashem, A. M., Awad, M., & Abdullah, H. (2024) · Elsevier eBooks · doi:10.1016/b978-0-443-18866-4.00001-8
Neural Process Models Can Help Keep Theory at the Forefront of Developmental Neuroscience: Commentary on Marshall, Arsalidou, Rueda, Crone and van Drunen
Spencer, J. P., & Johns, E. (2024) · Human Development · doi:10.1159/000541024
“For instance, we know that genes are differentially expressed as a function of differential experience (Gibney & Nolan, 2010); thus, rather than treating genes as one source of developmental change and associations as a different source, we need to understand how gene expression and associative…”
Activating Transcription Factor 5; A Potential Prognostic Molecular Biomarker for Cervical Cancer (CC)
Qiu, X. (2024) · Obstetrics Gynecology and Reproductive Sciences · doi:10.31579/2578-8965/227
The Progress of Research on the Excavation of Plant Biosynthetic Pathways of Natural Products
蒋, 凯. (2024) · Hans Journal of Agricultural Sciences · doi:10.12677/hjas.2024.148119
Unraveling the Impact of Gene Length on Kinetic Parameters: Implications in Drug Target selectionPreprint
Choudhuri, S., & Ghosh, B. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.08.31.610572
“Gene expression is a complex process inﬂuenced by a multitude of factors, from transcriptional initiation to post-translational modiﬁcations Gibney and Nolan ( 2010 ).”
Background
Epigenetic Regulation of Age-Associated Neuropsychiatric Disorders
Pandey, M., Kumar, A., & Konar, A. (2024) · Healthy ageing and longevity · doi:10.1007/978-3-031-68513-2_23
Shadow Maternal Subjectivities
Laufer, B. (2024) · Psychoanalytic Perspectives · doi:10.1080/1551806x.2024.2375974
“The study of genetics has revealed that gene expression—how it develops and functions—is not only affected by one’s lived experiences but also inherited from one’s progenitors (Gibney & Nolan, 2010, p. 4).”
The Epigenetic Impact of the Human Microbiota on Host Cells
Stein, R. A., Cui, R., Faussete, K. C., & Riber, L. (2024) · Springer eBooks · doi:10.1007/978-981-97-3790-1_5
Foundations of Life: Developmental Psychology of Birth and Postpartum
Alpuğan, Z. (2024) · doi:10.69860/nobel.9786053359234
Long Non-coding RNAs: Potential Diagnostic and Treatment Targets for Non-small Cell Lung Cancer
Li, R., Li, Y., Chen, H., Gao, J., & Liew, F. F. (2024) · Current Cancer Therapy Reviews · doi:10.2174/0115733947339431241001080157
Phyto-Epigenetics: An Approach to Unlock Myriads of Genetic Predisposition
Satyal, S. S., Satyal, S. S., Bhatt, M. D., Nath, M., Gohil, T., & Bhatt, D. (2024) · Springer eBooks · doi:10.1007/978-981-97-4292-9_17
Immunotoxicogenomics: Moving from observation to prediction
Muzaffer, U., Nisar, N., Ali, S. I., Kareem, O., & Paul, V. I. (2024) · Elsevier eBooks · doi:10.1016/b978-0-443-18502-1.00007-9
Epigenetics and miRNAs in Cancer
Jafari, D., Esmaeilzadeh, A., Shahbaz, S. K., Jafarzadeh, L., Mansourabadi, A. H., & Sadr, M. (2023) · Springer eBooks · doi:10.1007/978-3-030-80962-1_31-1
Synthesis, characterization, and evaluation of KDM4B inhibitors to attenuate inflammatory host immune response in periodontitis
Garrabrant, K. A., Furbish, A. B., Turner, J. M., Gomez, I. P., Mills, C. M., Maddi, A., & Peterson, Y. K. (2024) · Medicinal Chemistry Research · doi:10.1007/s00044-024-03362-5
“The gene transcription of PICs is regulated, in part, by these epigenetic enzymes [21], including the ‘ erasers ’ of the lysine-speci ﬁ c demethylase 4 (KDM4) family, which act on speci ﬁ c methylated lysine residues, serving as ‘ switches ’ to regulate gene transcription.”
The methylome of clonal seagrass shoots shows age-associated variation and differentiation of roots from other tissues
Nilsen, A. M. L., Hoarau, G. G., Smolina, I., Coyer, J. A., Boström, C., Kopp, M., & Jueterbock, A. O. (2024) · Biochimica et Biophysica Acta (BBA) - General Subjects · doi:10.1016/j.bbagen.2024.130748
The Effect of EGFR DNA Methylation on the Incident of Endometriosis
Haq, A. N., Ocktariyana, O., Hafy, Z., & Saleh, I. (2024) · SRIWIJAYA JOURNAL OF MEDICINE · doi:10.32539/sjm.v7i2.274
An Integrated Neuromuscular Training Intervention Applied in Primary School Induces Epigenetic Modifications in Disease‐Related Genes: A Genome‐Wide DNA Methylation Study
Vasileva, F., Font-Lladó, R., López-Ros, V., Barretina, J., Noguera-Castells, A., Esteller, M., López-Bermejo, A., & Prats-Puig, A. (2025) · Scandinavian Journal of Medicine & Science in Sports · doi:10.1111/sms.70012 · Cited by 2
The Applications of CRISPR Systems in Cancer Detection
Li, X. (2025) · Theoretical and Natural Science · doi:10.54254/2753-8818/2024.ka20160
CRISPR: fundamental principles and implications for anaesthesia
Perez, A. R., Mavrothalassitis, O., Chen, J. S., Hellman, J., & Gropper, M. A. (2025) · British Journal of Anaesthesia · doi:10.1016/j.bja.2024.11.040
“55 CRISPR activation (CRISPRa) and CRISPR inhibition (CRISPRi) are methods that augment or inhibit transcription at a genetic locus, respectively.”
Role of DNA Methylation in Cervical Cancer
Kandettu, A., Tharayil, J. S., & Chakrabarty, S. (2025) · Springer eBooks · doi:10.1007/978-981-96-3985-4_5
Monitoring treatment response with cancer biomarkers
Kaur, P., & Vyas, M. (2025) · Elsevier eBooks · doi:10.1016/b978-0-443-29279-8.00012-0
Transforming beef quality through healthy breeding: a strategy to reduce carcinogenic compounds and enhance human health: a review
Abebe, B. K., Guo, J., Jilo, D. D., Wang, J., Yu, S., Liu, H., Cheng, G., & Zan, L. (2025) · Mammalian Genome · doi:10.1007/s00335-025-10129-9
“Epigenomics provides a crucial perspective by elucidating how gene expression related to carcinogen formation can be influenced by epigenetic modifications, such as DNA methylation and histone alterations (Gibney and Nolan 2010; Chen et al. 2023; Cavalli and Heard 2019).”
Tetraspanins: Transcriptional and Post-Transcriptional Regulation and Involvement in Human Health and Diseases
Gupta, S., & Kumar, A. R. (2025) · DNA and cell biology reports. · doi:10.1089/dcbr.2025.0019
Predicting the effect of CRISPR-Cas9-based epigenome editingPreprint
Batra, S. S., Cabrera, A., Spence, J. P., Goell, J., Anand, S. S., Hilton, I. B., & Song, Y. S. (2025) · eLife · doi:10.7554/elife.92991.3
Longitudinal Analysis of Estrogen Receptor Gene Methylation, Estradiol, and Depressive Symptoms During the Perinatal Period
Zorzini, G., Johann, A., Đukić, J., Gardini, E., & Ehlert, U. (2025) · Molecular Neurobiology · doi:10.1007/s12035-025-05556-3
Molecular frontiers in hemodialysis: unraveling the role of membranes in gene expression, epigenetics, and inflammatory pathways
Syeda, H., Doan, V., SHOKER, A. S., & Abdelrasoul, A. (2025) · International Urology and Nephrology · doi:10.1007/s11255-025-04613-z
“Epigenetic changes can alter gene expression, leading to inflammation [348–350].”
Age-Related Epigenetic Dysregulation in Cancer Development: From Mechanisms to Therapeutic Targets
Feung, W. (2025) · American journal of student research. · doi:10.70251/hyjr2348.33155162
Systems Biology and Integrative Omics Decoding Xenobiotic Metabolism in Environmental Carcinogenesis
El-Sayed, W. M., Hassan, Y. M., Gwidah, H. A., Shalaby, A., Mahmoud, M. S., Waly, M. M., Mohamed, A. S., Hassan, Y. M., & Abdelgilil, M. E. (2025) · IGI Global eBooks · doi:10.4018/979-8-3373-2165-3.ch003
Information, representation, and cognition
Ramos, R. T., & Piqueira, J. R. C. (2025) · New Ideas in Psychology · doi:10.1016/j.newideapsych.2025.101177
snATAC-Express infers Gene Expression from Prioritized Chromatin Accessibility Peaks using Machine LearningPreprint
Brown, M. A., Ferrari, A., Dodd, A., Fang, S., Kolachala, V. L., Kugathasan, S., Wolfinger, R. D., & Gibson, G. C. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.07.25.666784
Gene Cloning and Expression Analysis
Bisai, K., Roy, A., Pati, M. K., & Behera, B. K. (2025) · Springer eBooks · doi:10.1007/978-981-95-0285-1_15
An overview of epigenetics methods
Tollefsbol, T. O. (2025) · Elsevier eBooks · doi:10.1016/b978-0-443-26759-8.00024-2
Epigenetic Modifications and Synthetic Biology Approaches for Crop Improvement
Guerfel, M., Essemine, J., & Ahlawat, Y. K. (2025) · Springer eBooks · doi:10.1007/978-981-95-0309-4_15
SCREAM: Single-cell Clustering using Representation Autoencoder of MultiomicsPreprint
Chrysinas, P., Venkatesan, S., Patel, P. G., & Gunawan, R. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.10.03.680290
“Transcriptomics captures gene expression by quantifying mRNA abundance in individual cells, while epigenomics measures DNA methylation states and chromatin accessibility, which are often associated with active transcription (16).”
Epigenetics and miRNAs in Cancer
Jafari, D., Esmaeilzadeh, A., Shahbaz, S. K., Jafarzadeh, L., Mansourabadi, A. H., & Sadr, M. (2025) · Springer eBooks · doi:10.1007/978-3-032-00749-0_31
Assessment of the relationship between genome information and sociality across mammal speciesPreprint
Salas, I., & Abades, S. R. (2025) · Research Square · doi:10.21203/rs.3.rs-5806422/v1
Host miRNAs regulate Escherichia coli O157 mucosal colonization through host-mucosa-attached microbiota interactions in calves
Pan, Z., Chen, Y., Zhou, M., McAllister, T. A., McNeilly, T. N., & Guan, L. L. (2025) · Microbiome · doi:10.1186/s40168-025-02184-w
“In addition to miRNA-regulated host gene expressions, host gene expressions can be regulated by other mechanisms such as alternative splicing, and epigenetics [63, 64].”
Dual roles of DNA methylation in gene expression and chromatin structure in a stick insectPreprint
Planidin, N. P., de Carvalho, C. F., Gompert, Z., & Nosil, P. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.10.30.682900
“One way that DNA methylation regulates gene expression is through its effects on chromatin: the complex of DNA, RNA and proteins that determines the physical structure of eukaryotic genomes 31 (Fig.”
Small Molecules from Microalgae as an Emerging Sustainable Alternative for Disease Management
Treviño-Almaguer, D., Espinosa-Rodríguez, B. A., Balderas-Renterı́a, I., & Llerena, J. L. G. (2025) · Springer eBooks · doi:10.1007/978-3-032-03675-9_7
The Role of Nuclear and Mitochondrial DNA in Myalgic Encephalomyelitis: Molecular Insights into Susceptibility and Dysfunction
Elremaly, W., Elbakry, M., Vahdani, Y., Franco, A., & Moreau, A. (2025) · DNA · doi:10.3390/dna5040053
“Epigenetics encompasses heritable and reversible changes in gene expression that do not alter the underlying DNA sequence [81] (Table 3).”
Exploring the Role of Histone Lysine Methyl Transferases in Pancreatic Cancer: A Review of Therapeutics and Clinical Implications
Navaneethan, A., Ajay, M., Makesh, K. Y., Munuswamy‐Ramanujam, G., Boga, R. B., Gnanasampanthapandian, D., & Palaniyandi, K. (2025) · Journal of Endocrinology & Reproduction · doi:10.18311/jer/2024/49088
Differences in chromatin accessibility and gene expression associated with growth performance in Pacific whiteleg shrimp, Litopenaeus vannamei
Ma, B., Liu, Y., Zhang, X., Yin, J., Wang, Y., Zhang, L., Chen, T., Wu, Y., Hu, C., & Luo, P. (2025) · Genomics · doi:10.1016/j.ygeno.2025.111170
Evolution of robust cell differentiation under epigenetic feedback
Plugers, D., & Kaneko, K. (2025) · Physical Review Research · doi:10.1103/9vhh-qjj1
“Furthermore, we have performed evolutionary runs for M ∈ [10 , 20 , 80] where we reconfirmed the presence of the three types discussed in this work.”
Association between DNA methylation at birth and cognitive outcomes from early childhood to adolescence: A systematic review
Islam, M. R., Hanif, A., Wong, Y. T., Silk, T. J., & Craig, J. M. (2025) · Neuroscience & Biobehavioral Reviews · doi:10.1016/j.neubiorev.2025.106526
Additional file 1 of Lifestyle weight-loss intervention may attenuate methylation aging: the CENTRAL MRI randomized controlled trial
Meir, A. Y., Keller, M., Bernhart, S. H., Rinott, E., Tsaban, G., Zelicha, H., Kaplan, A., Schwarzfuchs, D., Shelef, I., Gepner, Y., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14168350

Authors: Gibney, E. R., & Nolan, C. M.
Affiliations: University College Dublin (IE)
Corresponding author: Nolan, C M
ORCID: Gibney, E R
Nolan, C M
Venue: Heredity
Publisher: Springer Science and Business Media LLC
Published: 2010-05-12
Volume: 105
Issue: 1
Pages: 4-13
ISSN: 0018-067X (ISSN-L)
1365-2540
DOI: 10.1038/hdy.2010.54
OpenAlex: W1974450480
Cited by: 1,109
References: 119
Citations by year: 2026: 68 · 2025: 148 · 2024: 175 · 2023: 147 · 2022: 115 · 2021: 102 · 2020: 70 · 2019: 33 · 2018: 42 · 2017: 28 · 2016: 32 · 2015: 22 · 2014: 29 · 2013: 32 · 2012: 31
FWCI: 2.72
Type: journal article
Language: en
Open access: bronze
doi.org
Licence: www.springer.com/tdm (tdm)
www.springer.com/tdm (vor)
Locations: Heredity (publishedVersion)
PubMed (publishedVersion)
Funders: Science Foundation Ireland (RFP06)
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Syndromes and Imprinting
Keywords: epigenetics, gene expression regulation, transcriptional regulation, DNA methylation, histone modifications, RNA-mediated gene regulation, cell differentiation, development (biology), translational regulation, protein modification
MeSH terms: Animals, Cell Differentiation, Humans, DNA Modification Methylases, Gene Expression, Cell Lineage, Heredity, Epigenesis, Genetic

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

Epigenetics and gene expression

Abstract

Overview

Integrity signals

Verification

Claims the paper makes

Claims other papers make about this one

Self-check

Citations

Cites

Cited by

Related

Metadata

Record

About these checks