The DOI matches its Crossref record; 75 of the 75 references it cites were found in a registry or an index.
The respiratory tract microbiome and lung inflammation: a two-way street.
Open accessAbstract
The lungs are not sterile or free from bacteria; rather, they harbor a distinct microbiome whose composition is driven by different ecological rules than for the gastrointestinal tract. During disease, there is often a shift in community composition towards Gammaproteobacteria, the bacterial class that contains many common lung-associated gram-negative "pathogens." Numerous byproducts of host inflammation are growth factors for these bacteria. The extracellular nutrient supply for bacteria in the lungs, which is severely limited during health, markedly increases due to the presence of mucus and vascular permeability. While Gammaproteobacteria benefit from airway inflammation, they also encode molecular components that promote inflammation, potentially creating a cyclical inflammatory mechanism. In contrast, Prevotella species that are routinely acquired via microaspiration from the oral cavity may participate in immunologic homeostasis of the airways.vAreas of future research include determining for specific lung diseases (1) whether an altered lung microbiome initiates disease pathogenesis, promotes chronic inflammation, or is merely a marker of injury and inflammation, (2) whether the lung microbiome can be manipulated therapeutically to change disease progression, (3) what molecules (metabolites) generated during an inflammatory response promote cross-kingdom signaling, and (4) how the lung "ecosystem" collapses during pneumonia, to be dominated by a single pathogen.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“Prevotella from microaspiration, can also participate in the immune homeostasis of the respiratory tract (Huffnagle et al., 2017).”
From Oral Microbiome and SARS-CoV-2: Beware of Lung Co-infection (2020) · cites this paper as Huffnagle et al., 2017
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Structure, function and diversity of the healthy human microbiome
The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11234 · Cited by 11,726
A Toll-like receptor recognizes bacterial DNA
Hemmi, H., Takeuchi, O., Kawai, T., Kaisho, T., Sato, S., Sanjo, H., Matsumoto, M., Hoshino, K., Wagner, H., Takeda, K., et al. (2000) · Nature · doi:10.1038/35047123 · Cited by 6,491 · cited 1×
“Many Gammaproteobacteria also encode TLR5-binding flagellins, as well as TLR9-binding unmethylated CpG motifs.(50,51) Thus, a feedback loop can develop where bacteria that contain the most immunostimulatory microbe-associated molecular patterns are also the ones that benefit most metabolically from an inflammatory env…”
BackgroundMetabolites produced by commensal bacteria promote peripheral regulatory T-cell generation
Arpaia, N., Campbell, C., Fan, X., Dikiy, S., van der Veeken, J., deRoos, P., Liu, H., Cross, J. R., Pfeffer, K., Coffer, P. J., et al. (2013) · Nature · doi:10.1038/nature12726 · Cited by 4,838
Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species
Atarashi, K., Tanoue, T., Shima, T., Imaoka, A., Kuwahara, T., Momose, Y., Cheng, G., Yamasaki, S., Saito, T., Ohba, Y., et al. (2011) · Science · doi:10.1126/science.1198469 · Cited by 3,752
Dewhirst, F. E., Chen, T., Izard, J., Paster, B. J., Tanner, A. C. R., Yu, W.-H., Lakshmanan, A., & Wade, W. G. (2010) · Journal of Bacteriology · doi:10.1128/jb.00542-10 · Cited by 3,352
Topographical and Temporal Diversity of the Human Skin Microbiome
Grice, E. A., Kong, H. H., Conlan, S., Deming, C. B., Davis, J., Young, A. C., Program, N. C. S., Bouffard, G. G., Blakesley, R. W., Murray, P. R., et al. (2009) · Science · doi:10.1126/science.1171700 · Cited by 2,953
Gut Microbiota Metabolism of Dietary Fiber Influences Allergic Airway Disease and Hematopoiesis
Trompette, A., Gollwitzer, E. S., Yadava, K., Sichelstiel, A. K., Sprenger, N., Ngom-Bru, C., Blanchard, C., Junt, T., Nicod, L. P., Harris, N. L., et al. (2014) · Nature Medicine · doi:10.1038/nm.3444 · Cited by 2,862
Zelante, T., Iannitti, R. G., Cunha, C., De Luca, A., Giovannini, G., Pieraccini, G., Zecchi, R., D’Angelo, C., Massi-Benedetti, C., Fallarino, F., et al. (2013) · Immunity · doi:10.1016/j.immuni.2013.08.003 · Cited by 2,614
Disordered Microbial Communities in Asthmatic Airways
Hilty, M., Burke, C. M., Pedro, H., Cárdenas, P., Bush, A., Bossley, C. J., Davies, J. C., Ervine, A., Poulter, L. W., Pachter, L. S., et al. (2010) · PLoS ONE · doi:10.1371/journal.pone.0008578 · Cited by 1,874
Inflammation and wound healing: the role of the macrophage
Koh, T. J., & DiPietro, L. A. (2011) · Expert Reviews in Molecular Medicine · doi:10.1017/s1462399411001943 · Cited by 1,667
Flagged first, then by citations
Cited by
Sorted by citations
Items 201–300 of 540
The Microbiota–Human Health Axis
John, H. T., Thomas, T. C., Chukwuebuka, E. C., Ali, A. B., Anass, R., Tefera, Y. Y., Babu, B., Negruţ, N., Ferician, A. C., & Marian, P. (2025) · Microorganisms · doi:10.3390/microorganisms13040948 · Cited by 27
Maternal Gut Dysbiosis Alters Offspring Microbiota and Social Interactions
Zhang, Z., Xue, C., Ju, M., Guo, J., Wang, M., Yi, S., & Yi, X. (2021) · Microorganisms · doi:10.3390/microorganisms9081742 · Cited by 19
Andrade, B. G. N., Cuadrat, R. R. C., Tonetti, F. R., Kitazawa, H., & Villena, J. (2022) · Bioscience of Microbiota Food and Health · doi:10.12938/bmfh.2022-009 · Cited by 23
Pérez‐Losada, M., Castro‐Nallar, E., Boechat, J. L., Delgado, L., Rama, T. A., Berríos-Farías, V., & Oliveira, M. T. D. S. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1197135 · Cited by 19
Does “all disease begin in the gut”? The gut-organ cross talk in the microbiome
Chaudhary, P. P., Kaur, M., & Myles, I. A. (2024) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-024-13180-9 · Cited by 26
Yang, R., Zhang, Q., Ren, Z., Li, H., & Ma, Q. (2022) · Journal of Immunology Research · doi:10.1155/2022/2177884 · Cited by 19
Schmid‐Hempel, P. (2021) · Oxford University Press eBooks · doi:10.1093/oso/9780198832140.003.0005 · Cited by 19
Wang, Z., Yu, J., Liu, Y., Gong, J., Hu, Z., & Liu, Z. (2025) · Frontiers in Immunology · doi:10.3389/fimmu.2025.1636876 · Cited by 22
Yanuck, S. F., Pizzorno, J. E., Messier, H., & Fitzgerald, K. N. (2020) · PubMed · Cited by 18
Characterization of FFPE-induced bacterial DNA damage and development of a repair method
Bueso, Y. F., Walker, S. P., & Tangney, M. (2020) · Biology Methods and Protocols · doi:10.1093/biomethods/bpaa015 · Cited by 18
Salva, S., Kolling, Y., Ivir, M., Gutiérrez, F., & Alvarez, S. (2021) · Frontiers in Nutrition · doi:10.3389/fnut.2021.704868 · Cited by 20
El‐Saie, A., Fu, C., Grimm, S. L., Robertson, M. J., Hoffman, K. L., Putluri, V., Ambati, C. S. R., Putluri, N., Shivanna, B., Coarfa, C., et al. (2022) · Pediatric Research · doi:10.1038/s41390-022-02002-1 · Cited by 19
Zhang, Q., Tang, H., Yan, C., Han, W., Peng, L., Xu, J., Chen, X., Langford, P. R., Bei, W., Huang, Q., et al. (2022) · Infection and Immunity · doi:10.1128/iai.00239-22 · Cited by 18
The molecular features of chronic lung allograft dysfunction in lung transplant airway mucosa
Halloran, K. M., Mackova, M., Parkes, M., Hirji, A. S., Weinkauf, J. G., Timofte, I., Snell, G. I., Westall, G. P., Lischke, R., Zajacová, A., et al. (2022) · The Journal of Heart and Lung Transplantation · doi:10.1016/j.healun.2022.08.014 · Cited by 18
Chung, Y. W., Cha, J., Han, S., Chen, Y., Guček, M., Cho, H., Nakahira, K., Choi, A. M. K., Ryu, J.-H., & Yoon, J. (2019) · American Journal of Respiratory Cell and Molecular Biology · doi:10.1165/rcmb.2018-0248oc · Cited by 20
Lung microbiome, gut–lung axis and chronic obstructive pulmonary disease
Gokulan, K., Joshi, M., Khare, S., & Bartter, T. (2021) · Current Opinion in Pulmonary Medicine · doi:10.1097/mcp.0000000000000853 · Cited by 19
Development and establishment of oral microbiota in early life
Kageyama, S., & Takeshita, T. (2024) · Journal of Oral Biosciences · doi:10.1016/j.job.2024.05.001 · Cited by 19
The Role of the Oral Microbiome and Dental Caries in Respiratory Health: A Systematic Review
Zygmunt, Ł., Kiryk, S., Wesołek, K., Kiryk, J., Nawrot-Hadzik, I., Rybak, Z., Sztyler, K., Małyszek, A., Matys, J., & Dobrzyński, M. (2025) · Journal of Clinical Medicine · doi:10.3390/jcm14217670 · Cited by 17
Dissimilarity of Airway and Lung Tissue Microbiota in Smokers Undergoing Surgery for Lung Cancer
Reinhold, L., Möllering, A., Wallis, S., Palade, E., Schäfer, K., Drömann, D., Rupp, J., Graspeuntner, S., & Dalhoff, K. (2020) · Microorganisms · doi:10.3390/microorganisms8060794 · Cited by 17
Host and microbiome features of secondary infections in lethal covid-19
Zacharias, M., Kashofer, K., Wurm, P., Regitnig, P., Schütte, M., Neger, M., Ehmann, S., Marsh, L. M., Kwapiszewska, G., Loibner, M., et al. (2022) · iScience · doi:10.1016/j.isci.2022.104926 · Cited by 17
The association between the respiratory tract microbiome and clinical outcomes in patients with COPD
Yu, S., Zhang, H., Wan, L., Xue, M. F., Zhang, Y., & Gao, X. (2022) · Microbiological Research · doi:10.1016/j.micres.2022.127244 · Cited by 18
Microbial Biomarkers for Lung Cancer: Current Understandings and Limitations
Huang, J., & Huang, J. (2022) · Journal of Clinical Medicine · doi:10.3390/jcm11247298 · Cited by 20
Distinct respiratory microbiota associates with lung cancer clinicopathological characteristics
Zheng, X., Lu, X., & Hu, Y. (2023) · Frontiers in Oncology · doi:10.3389/fonc.2023.847182 · Cited by 19
Commins, N., Sullivan, M. R., McGowen, K., Koch, E. M., Rubin, E. J., & Farhat, M. R. (2023) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2302033120 · Cited by 17
Microbiota Profile of the Nasal Cavity According to Lifestyles in Healthy Adults in Santiago, Chile
Toro‐Ascuy, D., Cárdenas, J. P., Zorondo‐Rodríguez, F., González, D., Silva-Moreno, E., Puebla, C., Nunez-Parra, A., Reyes-Cerpa, S., & Fuenzalida, L. (2023) · Microorganisms · doi:10.3390/microorganisms11071635 · Cited by 18
Otálora-Otálora, B. A., Rivera, J. J. L., Aristizábal-Guzmán, C., Isaza-Ruget, M. A., & Álvarez, C. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms242316638 · Cited by 19
The airway mycobiome and interactions with immunity in health and chronic lung disease
Katsoulis, O., Pitts, O., & Singanayagam, A. (2024) · Oxford Open Immunology · doi:10.1093/oxfimm/iqae009 · Cited by 19
Therapeutic role of gut microbiota in lung injury-related cognitive impairment
Cheng, Y., Hu, G., Deng, L., Zan, Y., & Chen, X. (2025) · Frontiers in Nutrition · doi:10.3389/fnut.2024.1521214 · Cited by 19
Pérez‐Cobas, A. E., Ginévra, C., Rusniok, C., Jarraud, S., & Buchrieser, C. (2020) · mBio · doi:10.1128/mbio.00889-20 · Cited by 20
Jin, A., Zhao, Y., Yuan, Y., Ma, S., Chen, J., Yang, X., Lu, S., & Sun, Q. (2021) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.202100952 · Cited by 15
Sun, Y., Ding, X., Cui, Y., Li, H., Wang, D., Liang, H., Liu, S., Zhang, X., Wang, H., & Sun, T. (2022) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2022.818391 · Cited by 15
Finnicum, C. T., Rahal, Z., Hassane, M., Treekitkarnmongkol, W., Sinjab, A. F., Morris, R., Liu, Y., Tang, E., Viet, S., Petersen, J. L., et al. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms231810930 · Cited by 16
Cheng, C., Wang, Z., Ding, C., Liu, P., Xu, X., Li, Y., Yan, Y., Yin, X., Chen, B., & Gu, B. (2024) · Phenomics · doi:10.1007/s43657-023-00135-9 · Cited by 17
Oladokun, S., & Sharif, S. (2024) · Animal Microbiome · doi:10.1186/s42523-024-00308-5 · Cited by 19
Does Phage Therapy Need a Pan-Phage?
Bozidis, P., Markou, E., Gouni, A., & Gartzonika, K. (2024) · Pathogens · doi:10.3390/pathogens13060522 · Cited by 16
Agard, M., Ozer, E. A., Morris, A. R., Aillon, R. P., & Hauser, A. R. (2019) · Infection and Immunity · doi:10.1128/iai.00871-18 · Cited by 16
Diagnostic biologique de l’infection à Sars-CoV-2 : stratégies et interprétation des résultats
Hantz, S. (2020) · Revue Francophone des Laboratoires · doi:10.1016/s1773-035x(20)30313-0 · Cited by 16
Costantini, C., Nunzi, E., Spolzino, A., Palmieri, M., Renga, G., Zelante, T., Englmaier, L., Coufalíková, K., Spáčil, Z., Borghi, M., et al. (2021) · Infection and Immunity · doi:10.1128/iai.00105-21 · Cited by 16
The lung microbiome in patients with pneumocystosis
Kehrmann, J., Veckollari, B., Schmidt, D., Schildgen, O., Schildgen, O., Wagner, N., Zeschnigk, M., Klein‐Hitpaß, L., Witzke, O., Buer, J., et al. (2017) · BMC Pulmonary Medicine · doi:10.1186/s12890-017-0512-5 · Cited by 15
Multi-Omics Approaches: The Key to Improving Respiratory Health in People With Cystic Fibrosis?
Lee, A. J., Einarsson, G. G., Gilpin, D. F., & Tunney, M. M. (2020) · Frontiers in Pharmacology · doi:10.3389/fphar.2020.569821 · Cited by 14
Risks of Pneumonia in COPD Patients with New-Onset Atrial Fibrillation
Wang, Y., Lai, C., Wang, C., Wang, H., Yu, C., & Chen, L. (2018) · Journal of Clinical Medicine · doi:10.3390/jcm7090229 · Cited by 14
Wang, H., Hu, J., Wu, J., Ji, P., Shang, A., & Li, D. (2022) · Cancers · doi:10.3390/cancers14215394 · Cited by 14
Lower respiratory tract microbiome composition and community interactions in smokers
Campos, M., Cickovski, T., Fernandez, M., Jaric, M., Wanner, A., Holt, G. E., Donna, E., Mendes, E. S., Silva‐Herzog, E., Schneper, L. M., et al. (2023) · Access Microbiology · doi:10.1099/acmi.0.000497.v3 · Cited by 15
Oral microbiota and respiratory diseases: advances and perspectives
Liu, X., Shi, F., Zeng, J., Bi, J., Mo, C., Chai, Y., Wu, B., & Xu, S. (2025) · Clinical Microbiology Reviews · doi:10.1128/cmr.00150-24 · Cited by 20
Protoblock - A biological standard for formalin fixed samples
Bueso, Y. F., Walker, S. P., Hogan, G. E., Claesson, M. J., & Tangney, M. (2020) · Microbiome · doi:10.1186/s40168-020-00901-1 · Cited by 14
Seixas, S., Kolbe, A. R., Gomes, S. C. V., Sucena, M., Sousa, C., Rodrigues, L. V., Teixeira, G., Pinto, P., de Abreu, T. T., Bárbara, C., et al. (2021) · Scientific Reports · doi:10.1038/s41598-021-94468-y · Cited by 14
Innovative engineering approaches to model host-microbiome interactions in vitro
Azamar, K. M. M., Sudi, S. D., Mohammadalizadeh, Z., Coffin, C., Parker, I., & Porras, A. M. (2025) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2025.115677 · Cited by 13
Koceva, H., Amiratashani, M., Akbarimoghaddam, P., Hoffmann, B., Zhurgenbayeva, G., Gresnigt, M. S., Marcelino, V. R., Eggeling, C., Figge, M. T., Amorim, M. J., et al. (2025) · Open Biology · doi:10.1098/rsob.240231 · Cited by 15
Gut Dysbiosis Has the Potential to Reduce the Sexual Attractiveness of Mouse Female
Yi, X., & Cha, M. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.916766 · Cited by 13
The role of the host-microbiome and metabolomics in sarcoidosis
Kim, J., Lee, S., Moodley, Y. P., Yagnik, L., Birnie, D. H., & Dwivedi, G. (2023) · American Journal of Physiology-Cell Physiology · doi:10.1152/ajpcell.00316.2023 · Cited by 13
Donor IL-17 receptor A regulates LPS-potentiated acute and chronic murine lung allograft rejection
Watanabe, T., Juvet, S., Berra, G., Havlín, J., Zhong, W., Boonstra, K. M., Daigneault, T., Horie, M., Konoeda, C., Teskey, G., et al. (2023) · JCI Insight · doi:10.1172/jci.insight.158002 · Cited by 13
Microbes as Master Immunomodulators: Immunopathology, Cancer and Personalized Immunotherapies
Lérias, J. R., Paraschoudi, G., de Sousa, E., Martins, J. D., Condeço, C., Figueiredo, N., Carvalho, C. T., Dodoo, E., Castillo-Martín, M., Antonio Lopez-beltran, B., et al. (2020) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2019.00362 · Cited by 14
Microbiota: A Missing Link in The Pathogenesis of Chronic Lung Inflammatory Diseases
Magryś, A. (2021) · Polish Journal of Microbiology · doi:10.33073/pjm-2021-013 · Cited by 13
Yan, C., Chen, Y., Tian, Y., Hu, S., Wang, H., Zhang, X., Chu, Q., Huang, S., & Sun, W. (2025) · Cellular Oncology · doi:10.1007/s13402-025-01103-3 · Cited by 14
Lu, S., Zhou, Y., Hu, Y., Wang, J., Li, H., Lin, Y., Wang, D., Xian, J., Zhao, S., Ma, J., et al. (2023) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2023.1161763 · Cited by 12
Bacteria and fungi of the lung: allies or enemies?
Garaci, E., Pariano, M., Nunzi, E., Costantini, C., Bellet, M. M., Antognelli, C., Russo, M. A., & Romani, L. R. (2024) · Frontiers in Pharmacology · doi:10.3389/fphar.2024.1497173 · Cited by 12
Arneitz, C., Windhaber, J., Castellani, C., Kienesberger, B., Klymiuk, I., Fasching, G., Till, H., & Singer, G. (2020) · Pediatric Research · doi:10.1038/s41390-020-01222-7 · Cited by 12
An optimized approach for processing of frozen lung and lavage samples for microbiome studies
Wiscovitch-Russo, R. A., Singh, H., Oldfield, L. M., Fedulov, A. V., & González-Juarbe, N. (2022) · PLoS ONE · doi:10.1371/journal.pone.0265891 · Cited by 15
Inhalation delivery of nucleic acid gene therapies in preclinical drug development
Ruzycki, C. A., Montoya, D., Irshad, H., Cox, J. M., Zhou, Y., McDonald, J. D., & Kuehl, P. J. (2023) · Expert Opinion on Drug Delivery · doi:10.1080/17425247.2023.2261369 · Cited by 13
Targeting respiratory microbiomes in COPD and bronchiectasis
Aogáin, M. M., Tiew, P. Y., Jaggi, T. K., Narayana, J. K., Singh, S., Hansbro, P. M., Segal, L. N., & Chotirmall, S. H. (2024) · Expert Review of Respiratory Medicine · doi:10.1080/17476348.2024.2355155 · Cited by 11
The contribution of respiratory microbiome analysis to a treatable traits model of care
Taylor, S., O’Farrell, H. E., Simpson, J. L., Yang, I. A., & Rogers, G. B. (2018) · Respirology · doi:10.1111/resp.13411 · Cited by 11
Emerging cellular and molecular interactions between the lung microbiota and lung diseases
Li, X., & Meng, X. (2021) · Critical Reviews in Microbiology · doi:10.1080/1040841x.2021.1992345 · Cited by 11
He, Y., Li, J., Yu, W., Zheng, Y., Yang, D., Xu, Y., Zhao, L., Ma, X., Gong, P., & Gao, Z. (2022) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2022.943317 · Cited by 11
Zhu, L., Hao, Y., Li, W., Shi, B., Dong, H., & Gao, P. (2022) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2022.992352 · Cited by 11
Systems biology in inflammatory bowel diseases: on the way to precision medicine
Dovrolis, N. (2019) · Annals of Gastroenterology · doi:10.20524/aog.2019.0373 · Cited by 11
The forgotten oral microbial transplantation for improving the outcomes of COVID-19
AbdelMassih, A. F., Gadalla, M., Hussein, E., ElAhmady, M., Zahra, N., Eid, M. A., Hussein, M., Hassan, A. A., Abouzeid, A., Hassan, A., et al. (2021) · New Microbes and New Infections · doi:10.1016/j.nmni.2021.100923 · Cited by 10
Goeteyn, E., Taylor, S., Dicker, A., Bollé, L., Wauters, M., Joossens, M., Braeckel, E. V., Simpson, J. L., Burr, L. D., Chalmers, J. D., et al. (2024) · Respiratory Research · doi:10.1186/s12931-024-02983-z · Cited by 10
Pierro, F. D., RUSSO, P. L., Danza, M., Basile, I., SOARDO, S., CAPOCASALE, G., PAPARONE, S. B., PALETTA, V., LANZA, C., SCHIAVONE, E., et al. (2021) · Minerva Pediatrics · doi:10.23736/s2724-5276.20.05925-3 · Cited by 10
Butyrate as a Potential Driver of a Dysbiotic Shift of the Tongue Microbiota
Chen, B.-J., Takeshita, T., Tajikara, T., Asakawa, M., Kageyama, S., Shibata, Y., Ayukawa, Y., Yano, Y., & Yamashita, Y. (2022) · mSphere · doi:10.1128/msphere.00490-22 · Cited by 10
Yadav, B., Bhattacharya, S. S., Rosen, L., Nagpal, R., Yadav, H., & Yadav, J. S. (2024) · Nanomaterials · doi:10.3390/nano14030314 · Cited by 10
Pulvirenti, F., Giufrè, M., Pentimalli, T. M., Camilli, R., Milito, C., Villa, A., Sculco, E., Cerquetti, M., Pantosti, A., & Quinti, I. (2024) · Frontiers in Immunology · doi:10.3389/fimmu.2024.1371118 · Cited by 10
Raghavan, S., & Kim, K.-S. (2024) · International Journal of Antimicrobial Agents · doi:10.1016/j.ijantimicag.2024.107308 · Cited by 10
The potential of bacteriophage therapy in the treatment of paediatric respiratory infections
Jones, J. D., Varghese, D., Pabary, R., & Langley, R. J. (2022) · Paediatric Respiratory Reviews · doi:10.1016/j.prrv.2022.02.001 · Cited by 13
The Influence of Premature Birth on the Development of Pulmonary Diseases: Focus on the Microbiome
Wolska, M., Wypych, T. P., & Rodríguez-Viso, P. (2024) · Metabolites · doi:10.3390/metabo14070382 · Cited by 10
The Upper Respiratory Tract Microbiome Network Impacted by SARS-CoV-2
Li, W., & Ma, Z. S. (2022) · Microbial Ecology · doi:10.1007/s00248-022-02148-9 · Cited by 9
Man, M. A., Ungur, R. A., Motoc, N. Ş., Pop, L., Berindan‐Neagoe, I., & Ruta, V. M. (2023) · Diagnostics · doi:10.3390/diagnostics13193157 · Cited by 10
The Microbiome as Part of the Contemporary View of Tuberculosis Disease
Barbosa-Amezcua, M., Galeana-Cadena, D., Alvarado-Peña, N., & Silva‐Herzog, E. (2022) · Pathogens · doi:10.3390/pathogens11050584 · Cited by 12
Covert dysphagia and recurrent pneumonia related to antipsychotic treatment
Stewart, J. T. (2018) · Journal of Psychiatry and Neuroscience · doi:10.1503/jpn.170147 · Cited by 9
COVID-19 and the Microbiome: The Gut-Lung Connection
Aan, F. J., Glibetić, N., Montoya‐Uribe, V., & Matter, M. L. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-819265-8.00048-6 · Cited by 10
Probiotics in milk replacer affect the microbiome of the lung in neonatal dairy calves
McDaneld, T. G., Eicher, S. D., Dickey, A. M., Kritchevsky, J. E., Bryan, K. A., & Chitko-McKown, C. G. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1298570 · Cited by 9
Lung microbiome: new insights into bronchiectasis’ outcome
Azoicai, A. N., Lupu, A., Alexoae, M. M., Stârcea, I. M., Mocanu, A., Lupu, V. V., Mitrofan, E. C., Nedelcu, A. H., Ţepordei, R. T., Munteanu, D., et al. (2024) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2024.1405399 · Cited by 7
Towards airway microbiome engineering for improving respiratory health
Hern, K. E., & Prindle, A. B. (2025) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2025.115662 · Cited by 8
Transitions in lung microbiota landscape associate with distinct patterns of pneumonia progression
Sumner, J. T., Huttelmaier, S., Pickens, C. I., Moghadam, A. A., Abdala‐Valencia, H., Shen, J., Peltekian, A., Misharin, A. V., Wolfe, A. R., Szabo, A. L., et al. (2025) · Cell Host & Microbe · doi:10.1016/j.chom.2025.11.011 · Cited by 9
Interplay between bacteria and pulmonary immune system in respiratory infections
Li, J., Yang, L., Qin, X., Zhao, M., & Wang, S. (2026) · hLife · doi:10.1016/j.hlife.2025.09.006 · Cited by 8
Nunzi, E., Renga, G., Palmieri, M., Pieraccini, G., Pariano, M., Stincardini, C., D’Onofrio, F., Santarelli, I., Bellet, M. M., Bartoli, A., et al. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22168474 · Cited by 7
Subgingival microbial diversity and respiratory decline: A cross‐sectional study
Winning, L., Moran, G. P., McClory, M., Karim, I. A. E., Lundy, F. T., Patterson, C., Linden, D. A., Cullen, K. M., Kee, F., & Linden, G. J. (2023) · Journal Of Clinical Periodontology · doi:10.1111/jcpe.13819 · Cited by 7
Diversity of B Cell Populations and Ig Repertoire in Human Lungs
Aihara, F., Wang, Y., Belkina, A. C., Fearns, R., Mizgerd, J. P., Feng, F., & Kepler, T. B. (2023) · The Journal of Immunology · doi:10.4049/jimmunol.2200340 · Cited by 8
Lung Microbiome as a Treatable Trait in Chronic Respiratory Disorders
Scialò, F., Vitale, M., D’Agnano, V., Mariniello, D. F., Perrotta, F., Castaldo, A., Campbell, S. F. M., Pastore, L., Cazzola, M., & Bianco, A. (2023) · Lung · doi:10.1007/s00408-023-00645-3 · Cited by 8
Xepapadaki, P. V., Megremis, S., Rovina, N., Wardzyńska, A., Pasioti, M., Kritikou, M., Papadopoulos, N. G., Kaltsas, G., Lebessi, E., Doudoulakakis, A., et al. (2024) · Pulmonary Therapy · doi:10.1007/s41030-024-00261-3 · Cited by 9
Fan, S., Xue, B., & Ma, J. (2024) · Medicine · doi:10.1097/md.0000000000039013 · Cited by 8
Comparison of targeted metagenomics and IS-Pro methods for analysing the lung microbiome
Mahomed, T. G., Peters, R. P. H., Pretorius, G., Mahomed, A. G., Ueckermann, V., Kock, M. M., & Ehlers, M. M. (2021) · BMC Microbiology · doi:10.1186/s12866-021-02288-x · Cited by 8
The Metabolic Potential of the Human Lung Microbiome
Semmler, F., Belisário‐Ferrari, M. R., Kulosa, M., & Kaysser, L. (2024) · Microorganisms · doi:10.3390/microorganisms12071448 · Cited by 7
A Perspective on Lung Cancer and Lung Microbiome: Insight on Immunity
Emadi, R., Saki, S., Yousefi, P., & Tabibzadeh, A. (2025) · Immunity Inflammation and Disease · doi:10.1002/iid3.70145 · Cited by 8
Li, G., Sun, H., Ye, Y., Chen, L., Zhang, W., Yu, S., Li, Q., & Fan, L. (2025) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2025.1469440 · Cited by 7
Tranberg, A., Klarin, B., Johansson, J., & Påhlman, L. I. (2020) · MicrobiologyOpen · doi:10.1002/mbo3.1151 · Cited by 8
Oral seeding and niche-adaptation of middle ear biofilms in health
Lee, J., Jacob, K. M., Kashefi, K., & Reguera, G. (2021) · Biofilm · doi:10.1016/j.bioflm.2020.100041 · Cited by 8
The Effects of Immunosuppression on the Lung Microbiome and Metabolites in Rats
Dong, H., Tan, R., Chen, Z., Wang, L., Song, Y., Jin, M., Yin, J., Li, H., Lǐ, J., & Yang, D. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.817159 · Cited by 7
Yi, X., Yang, J., Huang, Y., Han, X., Li, H., Cen, L., Lin, Z., Pan, C., Wang, Z., & Guan, W. (2023) · Respiratory Research · doi:10.1186/s12931-023-02562-8 · Cited by 7
Microecology research: a new target for the prevention of asthma
Shi, H., Lan, Y.-H., Hu, Z.-C., Yan, Z.-N., Liu, Z., Kadier, X., Ma, L., Yu, J., & Liu, J. (2020) · Chinese Medical Journal · doi:10.1097/cm9.0000000000001127 · Cited by 9
Guo, J. G., Kong, Q., Liu, C., Kang, T., & Qin, C. (2021) · PubMed · doi:10.3967/bes2021.035 · Cited by 7
Metadata
- Authors
- Huffnagle, G. B., Dickson, R. P., & Lukacs, N. W.
- Affiliations
- University of Michigan (US)
- Corresponding author
- Huffnagle, G.B.
- Venue
- Mucosal Immunology
- Publisher
- Elsevier BV
- Published
- 2017-03
- Volume
- 10
- Issue
- 2
- Pages
- 299-306
- ISSN
- 1933-0219 (ISSN-L)
- PMC
- PMC5765541
- OpenAlex
- W2561758149
- Cited by
- 535
- References
- 75
- Citations by year
- 2026: 42 · 2025: 60 · 2024: 73 · 2023: 60 · 2022: 84 · 2021: 94 · 2020: 61 · 2019: 21 · 2018: 26 · 2017: 12
- FWCI
- 1.78
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Mucosal Immunology (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- University of Michigan (UL1TR000433)
- National Institutes of Health (UL1TR000433)
- National Heart, Lung, and Blood Institute (U01HL098961, ROI-HL114447, R01HL114858, K23HL130641, R01HL114447, T32HL007749)
- National Institute of Allergy and Infectious Diseases (AI-036302, R01AI036302)
- National Center for Advancing Translational Sciences
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Dentistry › Periodontics › Oral microbiology and periodontitis research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Bacterial biofilms and quorum sensing
- Keywords
- airway microbiome, lung inflammation, Gammaproteobacteria, Gram-negative pathogens, Prevotella, mucus, vascular permeability, host-microbe interactions, chronic inflammation, pneumonia, microaspiration
- MeSH terms
- Animals, Capillary Permeability, Homeostasis, Humans, Lung Diseases, Pneumonia, Respiratory System, Prevotella, Gammaproteobacteria, Host-Pathogen Interactions, Microbiota, Dysbiosis
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review