The DOI matches its Crossref record; 32 of the 32 references it cites were found in a registry or an index.
Cyclophilin D-dependent mitochondrial permeability transition regulates some necrotic but not apoptotic cell death
Abstract
Mitochondria play an important role in energy production, Ca2+ homeostasis and cell death. In recent years, the role of the mitochondria in apoptotic and necrotic cell death has attracted much attention. In apoptosis and necrosis, the mitochondrial permeability transition (mPT), which leads to disruption of the mitochondrial membranes and mitochondrial dysfunction, is considered to be one of the key events, although its exact role in cell death remains elusive. We therefore created mice lacking cyclophilin D (CypD), a protein considered to be involved in the mPT, to analyse its role in cell death. CypD-deficient mice were developmentally normal and showed no apparent anomalies, but CypD-deficient mitochondria did not undergo the cyclosporin A-sensitive mPT. CypD-deficient cells died normally in response to various apoptotic stimuli, but showed resistance to necrotic cell death induced by reactive oxygen species and Ca2+ overload. In addition, CypD-deficient mice showed a high level of resistance to ischaemia/reperfusion-induced cardiac injury. Our results indicate that the CypD-dependent mPT regulates some forms of necrotic death, but not apoptotic death.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“To date, peptidylprolyl isomerase F (PPIF; best known as cyclophilin D, CYPD) is the only protein whose in vivo requirement for MPT induction has been formally validated with robust genetic tools (although there is consensus around the notion that CYPD does not constitute the pore-forming unit of the PTPC) [376–379].”
From Molecular mechanisms of cell death: recommendations of the nomenclature committee on cell death 2018. (2018) · cites this paper as [377]
In the citing paper
“although there is consensus around the notion that CYPD does not constitute the pore-forming unit of the PTPC) [376–379].”
From Molecular mechanisms of cell death: recommendations of the nomenclature committee on cell death 2018. (2018) · cites this paper as [377]
In the citing paper
“Formation of the pore can occur in response to many stimuli, including Ca2+ overload and oxidant stress, but MPT does not play a role in all forms of apoptosis (46, 125, 309, 438).”
From Redox regulation of mitochondrial function (2012) · cites this paper as [309]
In the citing paper
“Formation of the pore can occur in response to many stimuli, including Ca2+ overload and oxidant stress, but MPT does not play a role in all forms of apoptosis (46, 125, 309, 438).”
From Redox regulation of mitochondrial function (2012) · cites this paper as [309]
In the citing paper
“In addition, in the absence of cyclophilin D, mice are more protected from cardiac damage after ischemia/reperfusion (25, 309);”
From Redox regulation of mitochondrial function (2012) · cites this paper as [309]
Citations
Cites
Proapoptotic BAX and BAK: A Requisite Gateway to Mitochondrial Dysfunction and Death
Wei, M. C., Zong, W.-X., Cheng, E. H.-Y., Lindsten, T., Panoutsakopoulou, V., Ross, A. J., Roth, K. A., MacGregor, G. R., Thompson, C. B., & Korsmeyer, S. J. (2001) · Science · doi:10.1126/science.1059108 · Cited by 3,988
The Pathophysiology of Mitochondrial Cell Death
Green, D. R., & Kroemer, G. (2004) · Science · doi:10.1126/science.1099320 · Cited by 3,487
Cyclophilin and peptidyl-prolyl cis-trans isomerase are probably identical proteins
Fischer, G., Wittmann‐Liebold, B., Lang, K., Kiefhaber, T., & Schmid, F. X. (1989) · Nature · doi:10.1038/337476a0 · Cited by 1,408
The ADP/ATP translocator is not essential for the mitochondrial permeability transition pore
Kokoszka, J. E., Waymire, K. G., Levy, S. E., Sligh, J. E., Cai, J., Jones, D. P., MacGregor, G. R., & Wallace, D. C. (2004) · Nature · doi:10.1038/nature02229 · Cited by 1,086
A Distinct Pathway Remodels Mitochondrial Cristae and Mobilizes Cytochrome c during Apoptosis
Scorrano, L., Ashiya, M., Buttle, K., Weiler, S., Oakes, S. A., Mannella, C. A., & Korsmeyer, S. J. (2002) · Developmental Cell · doi:10.1016/s1534-5807(01)00116-2 · Cited by 1,072
The mitochondrion in apoptosis: how Pandora's box opens
Zamzami, N., & Kroemer, G. (2001) · Nature Reviews Molecular Cell Biology · doi:10.1038/35048073 · Cited by 1,055
Narita, M., Shimizu, S., Ito, T., Chittenden, T., Lutz, R. J., Matsuda, H., & Tsujimoto, Y. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.25.14681 · Cited by 942
Self-citationFinucane, D., Bossy‐Wetzel, E., Waterhouse, N. J., Cotter, T. G., & Green, D. R. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.4.2225 · Cited by 714
The permeability transition pore complex: another view
Halestrap, A. P., McStay, G. P., & Clarke, S. J. (2002) · Biochimie · doi:10.1016/s0300-9084(02)01375-5 · Cited by 709
Broekemeier, K. M., Dempsey, M. E., & Pfeiffer, D. R. (1989) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)83116-7 · Cited by 699
Eskes, R., Antonsson, B., Osen-Sand, A., Montessuit, S., Richter, C., Sadoul, R., Mazzei, G., Nichols, A., & Martinou, J.-C. (1998) · The Journal of Cell Biology · doi:10.1083/jcb.143.1.217 · Cited by 651
Role of the Mitochondrial Permeability Transition in Myocardial Disease
Weiss, J. N., Kôrge, P., Honda, H. M., & Ping, P. (2003) · Circulation Research · doi:10.1161/01.res.0000087542.26971.d4 · Cited by 610
Cell death regulation by the Bcl‐2 protein family in the mitochondria
Tsujimoto, Y. (2003) · Journal of Cellular Physiology · doi:10.1002/jcp.10254 · Cited by 498
Self-citationHe, L., & Lemasters, J. J. (2002) · FEBS Letters · doi:10.1016/s0014-5793(01)03314-2 · Cited by 438
Bcl-2 prevents apoptotic mitochondrial dysfunction by regulating proton flux
Shimizu, S., Eguchi, Y., Kamiike, W., Funahashi, Y., Mignon, A., Lacronique, V., Matsuda, H., & Tsujimoto, Y. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.4.1455 · Cited by 410
Self-citationExercise Provides Direct Biphasic Cardioprotection via Manganese Superoxide Dismutase Activation
Yamashita, N., Hoshida, S., Otsu, K., Asahi, M., Kuzuya, T., & Hori, M. (1999) · The Journal of Experimental Medicine · doi:10.1084/jem.189.11.1699 · Cited by 370
Self-citationJavadov, S. A., Clarke, S. J., Das, M., Griffiths, E. J., Lim, K. H. H., & Halestrap, A. P. (2003) · The Journal of Physiology · doi:10.1113/jphysiol.2003.034231 · Cited by 350
Bcl-2 expression prevents activation of the ICE protease cascade.
Shimizu, S., Eguchi, Y., Kamiike, W., Matsuda, H., & Tsujimoto, Y. (1996) · PubMed · Cited by 253
Self-citationPreservation of Mitochondrial Structure and Function after Bid- or Bax-Mediated Cytochrome c Release
von Ahsen, O., Renken, C. W., Perkins, G. A., Kluck, R. M., Bossy‐Wetzel, E., & Newmeyer, D. D. (2000) · The Journal of Cell Biology · doi:10.1083/jcb.150.5.1027 · Cited by 245
Peptidylproline cis/trans isomerases
Gałat, A., & Metcalfe, S. M. (1995) · Progress in Biophysics and Molecular Biology · doi:10.1016/0079-6107(94)00009-x · Cited by 240
Matsumoto, S., Friberg, H., Ferrand-Drake, M., & Wieloch, T. W. (1999) · Journal of Cerebral Blood Flow & Metabolism · doi:10.1097/00004647-199907000-00002 · Cited by 215
Event timing turns punishment to reward
Tanimoto, H., Heisenberg, M., & Gerber, B. (2004) · Nature · doi:10.1038/430983a · Cited by 205
Trollinger, D. R., Cascio, W. E., & Lemasters, J. J. (1997) · Biochemical and Biophysical Research Communications · doi:10.1006/bbrc.1997.7042 · Cited by 199
Li, Y., Johnson, N., Capano, M., Edwards, M., & Crompton, M. (2004) · Biochemical Journal · doi:10.1042/bj20040669 · Cited by 165
The Mitochondrial Permeability Transition Augments Fas-induced Apoptosis in Mouse Hepatocytes
Hatano, E., Bradham, C. A., Stark, A., Iimuro, Y., Lemasters, J. J., & Brenner, D. A. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.275.16.11814 · Cited by 147
Dual role for the ADP/ATP translocator?
Halestrap, A. P. (2004) · Nature · doi:10.1038/nature02816 · Cited by 124
Byrne, A. M., Lemasters, J. J., & Nieminen, A. (1999) · Hepatology · doi:10.1002/hep.510290521 · Cited by 120
Хаспеков, Л. Г., Friberg, H., Halestrap, A. P., Викторов, И. В., & Wieloch, T. W. (1999) · European Journal of Neuroscience · doi:10.1046/j.1460-9568.1999.00743.x · Cited by 111
PLA2 activity is required for nuclear shrinkage in caspase-independent cell death
Shinzawa, K., & Tsujimoto, Y. (2003) · The Journal of Cell Biology · doi:10.1083/jcb.200306159 · Cited by 91
Self-citationOn the Involvement of Mitochondrial Intermembrane Junctional Complexes in Apoptosis
Crompton, M. (2003) · Current Medicinal Chemistry · doi:10.2174/0929867033457197 · Cited by 77
BENEFICIAL EFFECTS OF CYCLOSPORINE ON REOXYGENATION INJURY IN HYPOXIC RAT LIVER
Shimizu, S., Kamiike, W., Hatanaka, N., Miyata, M., Inoue, T., Yoshida, Y., Tagawa, K., & Matsuda, H. (1994) · Transplantation · doi:10.1097/00007890-199406150-00005 · Cited by 14
Self-citationBENEFICIAL EFFECTS OF CYCLOSPORINE ON REOXYGENATION INJURY IN HYPOXIC RAT LIVER
Shimizu, S., Kamiike, W., Hatanaka, N., Miyata, M., Inoue, T., Yoshida, Y., Tagawa, K., & Matsuda, H. (1994) · Transplantation · doi:10.1097/00007890-199457110-00005 · Cited by 14
Self-citation
Cited by
Sorted by citations
Galluzzi, L., Vitale, I., Aaronson, S. A., Abrams, J. M., Adam, D., Agostinis, P., Alnemri, E. S., Altucci, L., Amelio, I., Andrews, D. W., et al. (2018) · Cell Death & Differentiation · doi:10.1038/s41418-017-0012-4 · Cited by 6,680
Self-citationMitochondrial Reactive Oxygen Species (ROS) and ROS-Induced ROS Release
Zorov, D. B., Juhaszova, M., & Sollott, S. J. (2014) · Physiological Reviews · doi:10.1152/physrev.00026.2013 · Cited by 5,383
Photodynamic therapy of cancer: An update
Agostinis, P., Berg, K., Cengel, K. A., Foster, T. H., Girotti, A. W., Gollnick, S. O., Hahn, S. M., Hamblin, M. R., Juzeniene, A., Kessel, D., et al. (2011) · CA: A Cancer Journal for Clinicians · doi:10.3322/caac.20114 · Cited by 5,145
Mitochondrial membrane permeabilization in cell death
Kroemer, G., Galluzzi, L., & Brenner, C. (2007) · Physiological Reviews · doi:10.1152/physrev.00013.2006 · Cited by 3,598
Mitochondria and cell death: outer membrane permeabilization and beyond
Tait, S. W. G., & Green, D. R. (2010) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2952 · Cited by 2,593
Metadata
- Authors
- Nakagawa, T., Shimizu, S., Watanabe, T., Yamaguchi, O., Otsu, K., Yamagata, H., Inohara, H., Kubo, T., & Tsujimoto, Y.
- Affiliations
- Laboratory of Molecular Genetics (PL)
- Japan Science and Technology Agency (JP)
- The University of Osaka (JP)
- Corresponding author
- Tsujimoto, Yoshihide
- ORCID
- Venue
- Nature
- Published
- 2005-03
- Volume
- 434
- Issue
- 7033
- Pages
- 652-658
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- OpenAlex
- W2063099262
- Cited by
- 1,635
- References
- 32
- Citations by year
- 2026: 27 · 2025: 40 · 2024: 32 · 2023: 42 · 2022: 47 · 2021: 54 · 2020: 55 · 2019: 58 · 2018: 73 · 2017: 70 · 2016: 77 · 2015: 74 · 2014: 119 · 2013: 81 · 2012: 115
- FWCI
- 41.13
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Mitochondrial Function and Pathology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Cell death mechanisms and regulation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Signaling Pathways in Disease
- Keywords
- cyclophilin D, mitochondrial permeability transition, necrosis, apoptosis, cyclosporine, reactive oxygen species, calcium overload, ischemia-reperfusion injury, cardiac injury, mitochondrial dysfunction
- MeSH terms
- Peptidyl-Prolyl Isomerase F, Animals, Calcium, Cells, Cultured, Enzyme Activation, Fibroblasts, Hydrogen Peroxide, Mitochondria, Liver, Mitochondrial Swelling, Necrosis, Thymus Gland, Myocardial Reperfusion Injury, Myocardial Ischemia, Apoptosis, Reactive Oxygen Species, Mice, Knockout, Caspases, Cyclophilins, Hepatocytes, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review