Mutational robustness can facilitate adaptation
Open accessAbstract
Robustness seems to be the opposite of evolvability. If phenotypes are robust against mutation, we might expect that a population will have difficulty adapting to an environmental change, as several studies have suggested. However, other studies contend that robust organisms are more adaptable. A quantitative understanding of the relationship between robustness and evolvability will help resolve these conflicting reports and will clarify outstanding problems in molecular and experimental evolution, evolutionary developmental biology and protein engineering. Here we demonstrate, using a general population genetics model, that mutational robustness can either impede or facilitate adaptation, depending on the population size, the mutation rate and the structure of the fitness landscape. In particular, neutral diversity in a robust population can accelerate adaptation as long as the number of phenotypes accessible to an individual by mutation is smaller than the total number of phenotypes in the fitness landscape. These results provide a quantitative resolution to a significant ambiguity in evolutionary theory.
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An experimental E. coli culture could evolve the ability to aerobically utilize citrate, or the ability to use the non-natural carbon source 1,2-propanediol; also, a strain deficient in glutathione biosynthesis was able to develop compensatory mutations to restore this function.
“For example, an experimental E. coli culture could evolve the ability to aerobically utilize citrate [37], or the ability to use the non-natural carbon source 1,2-propanediol [71]; also, a strain deficient in glutathione biosynthesis was able to develop compensatory mutations to restore this function [147].”
From Adaptive laboratory evolution—Principles and applications for biotechnology (2013) · cites this paper as [37]
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Cites
Handbook of Mathematical Functions with Formulas, Graphs and Mathematical Tables.
Barton, D. E., Abramovitz, M., & Stegun, I. A. (1965) · Journal of the Royal Statistical Society Series A (General) · doi:10.2307/2343473 · Cited by 3,761 · see citing works
A second course in stochastic processes
Karlin, S., & Taylor, H. E. (1981) · Cited by 2,819 · see citing works
Hsp90 as a capacitor for morphological evolution
Rutherford, S. L., & Lindquist, S. (1998) · Nature · doi:10.1038/24550 · Cited by 2,270 · see citing works
Protein stability promotes evolvability
Bloom, J. D., Labthavikul, S. T., Otey, C. R., & Arnold, F. H. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0510098103 · Cited by 1,221 · see citing works
Robustness and Evolvability in Living Systems
Wagner, A. (2005) · Princeton University Press eBooks · doi:10.1515/9781400849383 · Cited by 975 · see citing works
Blount, Z. D., Borland, C. Z., & Lenski, R. E. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0803151105 · Cited by 840 · see citing works
PERSPECTIVE: EVOLUTION AND DETECTION OF GENETIC ROBUSTNESS
de Visser, J. A. G. M., Hermisson, J., Wagner, G. P., Ancel, L. W., Bagheri, H. C., Blanchard, J. L., Chao, L., Cheverud, J. M., Elena, S. F., Fontana, W., et al. (2003) · Evolution · doi:10.1111/j.0014-3820.2003.tb00377.x · Cited by 695 · see citing works
Self-citationRobustness and evolvability: a paradox resolved
Wagner, A. (2008) · Proceedings of the Royal Society B: Biological Sciences · doi:10.1098/rspb.2007.1137 · Cited by 669 · see citing works
Evolution of digital organisms at high mutation rates leads to survival of the flattest
Wilke, C. O., Wang, J. L., Ofria, C., Lenski, R. E., & Adami, C. (2001) · Nature · doi:10.1038/35085569 · Cited by 636 · see citing works
Robustness and evolvability in living systems
(2006) · Choice Reviews Online · doi:10.5860/choice.43-4658 · Cited by 580 · see citing works
Neutral evolution of mutational robustness
van Nimwegen, E., Crutchfield, J. P., & Huynen, M. A. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.17.9716 · Cited by 568 · see citing works
Epochal Evolution Shapes the Phylodynamics of Interpandemic Influenza A (H3N2) in Humans
Koelle, K., Cobey, S. E., Grenfell, B. T., & Pascual, M. (2006) · Science · doi:10.1126/science.1132745 · Cited by 530 · see citing works
Diffusion processes in one dimension
Feller, W. (1954) · Transactions of the American Mathematical Society · doi:10.1090/s0002-9947-1954-0063607-6 · Cited by 526 · see citing works
Evolutionary capacitance as a general feature of complex gene networks
Bergman, A., & Siegal, M. L. (2003) · Nature · doi:10.1038/nature01765 · Cited by 520 · see citing works
Plasticity, evolvability, and modularity in RNA
Ancel, L. W., & Fontana, W. (2000) · Journal of Experimental Zoology · doi:10.1002/1097-010x(20001015)288:3 · Cited by 471 · see citing works
Continuity in evolution: on the nature of transitions.
Fontana, W., & Schuster, P. (1998) · Science · doi:10.1126/science.280.5368.1451 · Cited by 456 · see citing works
The plausibility of life: resolving Darwin's dilemma
(2006) · Choice Reviews Online · doi:10.5860/choice.43-4010 · Cited by 438 · see citing works
Kirschner, M. W., & Gerhart, J. C. (2017) · Yale University Press eBooks · doi:10.12987/9780300128673 · Cited by 408 · see citing works
Innovation and robustness in complex regulatory gene networks
Ciliberti, S., Martin, O., & Wagner, A. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0705396104 · Cited by 362 · see citing works
Evolvability and hierarchy in rewired bacterial gene networks
Isalan, M., Lemerle, C., Michalodimitrakis, K., Horn, C., Beltrao, P., Raineri, E., Garriga-Canut, M., & Serrano, L. (2008) · Nature · doi:10.1038/nature06847 · Cited by 307 · see citing works
Robustness and evolvability in genetic regulatory networks
Aldana, M., Balleza, E., Kauffman, S. A., & Resendiz, O. (2006) · Journal of Theoretical Biology · doi:10.1016/j.jtbi.2006.10.027 · Cited by 270 · see citing works
Redundancy, antiredundancy, and the robustness of genomes
Krakauer, D. C., & Plotkin, J. B. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.032668599 · Cited by 254 · see citing works
Self-citationCarter, A. J. R., Hermisson, J., & Hansen, T. F. (2005) · Theoretical Population Biology · doi:10.1016/j.tpb.2005.05.002 · Cited by 225 · see citing works
Balancing Robustness and Evolvability
Lenski, R. E., Barrick, J. E., & Ofria, C. (2006) · PLoS Biology · doi:10.1371/journal.pbio.0040428 · Cited by 211 · see citing works
Sloppiness, robustness, and evolvability in systems biology
Daniels, B. C., Chen, Y.-J., Sethna, J. P., Gutenkunst, R. N., & Myers, C. R. (2008) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2008.06.008 · Cited by 192 · see citing works
Facilitated Variation: How Evolution Learns from Past Environments To Generalize to New Environments
Parter, M., Kashtan, N., & Alon, U. (2008) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1000206 · Cited by 171 · see citing works
The Ascent of the Abundant: How Mutational Networks Constrain Evolution
Cowperthwaite, M. C., Economo, E. P., Harcombe, W. R., Miller, E. L., & Ancel, L. W. (2008) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1000110 · Cited by 122 · see citing works
Robustness promotes evolvability of thermotolerance in an RNA virus
McBride, R. C., Ogbunugafor, C. B., & Turner, P. E. (2008) · BMC Evolutionary Biology · doi:10.1186/1471-2148-8-231 · Cited by 105 · see citing works
EVOLUTION AND DETECTION OF GENETIC ROBUSTNESS
de Visser, J. A. G. M., Hermisson, J., Ancel, L. W., Bagheri, H. C., Blanchard, J. L., Chao, L., Cheverud, J. M., Elena, S. F., Gibson, G. C., Hansen, T. F., et al. (2003) · Cited by 98 · see citing works
Evolution of Genetic Potential
Ancel, L. W., Ancel, F. D., & Lachmann, M. (2005) · PLoS Computational Biology · doi:10.1371/journal.pcbi.0010032 · Cited by 85 · see citing works
The effect of genetic robustness on evolvability in digital organisms
Elena, S. F., & Sanjuán, R. (2008) · BMC Evolutionary Biology · doi:10.1186/1471-2148-8-284 · Cited by 57 · see citing works
Influenza Escapes Immunity Along Neutral Networks
van Nimwegen, E. (2006) · Science · doi:10.1126/science.1137300 · Cited by 55 · see citing works
Synonymous Genes Explore Different Evolutionary Landscapes
Cambray, G., & Mazel, D. (2008) · PLoS Genetics · doi:10.1371/journal.pgen.1000256 · Cited by 38 · see citing works
Selection for mutational robustness in finite populations
Forster, R., Adami, C., & Wilke, C. O. (2006) · Journal of Theoretical Biology · doi:10.1016/j.jtbi.2006.06.020 · Cited by 37 · see citing works
Cycles, permutations and the structure of the yule process with immigration
Joyce, P., & Tavaré, S. (1987) · Stochastic Processes and their Applications · doi:10.1016/0304-4149(87)90209-2 · Cited by 36 · see citing works
New structural variation in evolutionary searches of RNA neutral networks
Sumedha, Martin, O. C., & Wagner, A. (2007) · Biosystems · doi:10.1016/j.biosystems.2006.11.007 · Cited by 34 · see citing works
Wilds, R., Kauffman, S. A., & Glass, L. (2008) · Chaos An Interdisciplinary Journal of Nonlinear Science · doi:10.1063/1.2962223 · Cited by 8 · see citing works
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Regulation of Homologous Recombination in Eukaryotes
Heyer, W.-D., Ehmsen, K. T., & Liu, J. (2010) · Annual Review of Genetics · doi:10.1146/annurev-genet-051710-150955 · Cited by 1,066 · see citing works
Adaptive laboratory evolution—Principles and applications for biotechnology
Dragosits, M., & Mattanovich, D. (2013) · Microbial Cell Factories · doi:10.1186/1475-2859-12-64 · Cited by 827 · see citing works
Moal, I. H., & Fernández-Recio, J. (2012) · Bioinformatics · doi:10.1093/bioinformatics/bts489 · Cited by 281 · see citing works
Protein Homeostasis and the Phenotypic Manifestation of Genetic Diversity: Principles and Mechanisms
Jarosz, D. F., Taipale, M., & Lindquist, S. (2010) · Annual Review of Genetics · doi:10.1146/annurev.genet.40.110405.090412 · Cited by 179 · see citing works
Manrubia, S., Cuesta, J. A., Aguirre, J., Ahnert, S. E., Altenberg, L., Cano, A. V., Catalán, P., Diaz-Uriarte, R., Elena, S. F., García-Martín, J. A., et al. (2021) · Physics of Life Reviews · doi:10.1016/j.plrev.2021.03.004 · Cited by 88 · see citing works
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Mozhayskiy, V., & Tagkopoulos, I. (2013) · Integr. Biol. · doi:10.1039/c2ib20095c · Cited by 24 · see citing works
- Authors
- Draghi, J. A., Parsons, T. L., Wagner, G. P., & Plotkin, J. B.
- Affiliations
- University of Pennsylvania (US)
- Yale University (US)
- Corresponding author
- Plotkin, Joshua B.
- Venue
- Nature
- Published
- 2010-01
- Volume
- 463
- Issue
- 7279
- Pages
- 353-355
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- PMC
- PMC3071712
- OpenAlex
- W2012457691
- Cited by
- 336
- References
- 37
- Citations by year
- 2026: 7 · 2025: 11 · 2024: 12 · 2023: 6 · 2022: 12 · 2021: 16 · 2020: 12 · 2019: 15 · 2018: 30 · 2017: 21 · 2016: 24 · 2015: 32 · 2014: 37 · 2013: 16 · 2012: 32
- FWCI
- 18.19
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- Funders
- National Institute of Allergy and Infectious Diseases (U54AI057168)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
- Social Sciences › Arts and Humanities › History and Philosophy of Science › Philosophy and History of Science
- Social Sciences › Cultural Studies › Language and cultural evolution
- Keywords
- mutational robustness, evolvability, adaptation, fitness landscape, population size, mutation rate, population genetic models, environmental change
- MeSH terms
- Adaptation, Physiological, Biological Evolution, Genetics, Population, Genotype, Models, Genetic, Mutation, Phenotype, Population Density, Time Factors, Genetic Variation, Mutagenesis, Genetic Fitness
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