The DOI matches its Crossref record; 30 of the 30 references it cites were found in a registry or an index.
Ubiquitin-dependent DNA damage bypass is separable from genome replication
Open accessAbstract
Post-replication repair (PRR) is a pathway that allows cells to bypass or overcome lesions during DNA replication. In eukaryotes, damage bypass is activated by ubiquitylation of the replication clamp PCNA through components of the RAD6 pathway. Whereas monoubiquitylation of PCNA allows mutagenic translesion synthesis by damage-tolerant DNA polymerases, polyubiquitylation is required for an error-free pathway that probably involves a template switch to the undamaged sister chromatid. Both the timing of PRR events during the cell cycle and their location relative to replication forks, as well as the factors required downstream of PCNA ubiquitylation, have remained poorly characterized. Here we demonstrate that the RAD6 pathway normally operates during S phase. However, using an inducible system of DNA damage bypass in budding yeast (Saccharomyces cerevisiae), we show that the process is separable in time and space from genome replication, thus allowing direct visualization and quantification of productive PRR tracts. We found that both during and after S phase ultraviolet-radiation-induced lesions are bypassed predominantly via translesion synthesis, whereas the error-free pathway functions as a backup system. Our approach has revealed the distribution of PRR tracts in a synchronized cell population. It will allow an in-depth mechanistic analysis of how cells manage the processing of lesions to their genomes during and after replication.
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“In these conditions, repair may not be completed and the extension of the ssDNA region may meet two purposes: activating the checkpoint response and channeling the problematic lesion to a different repair pathway (e.g., recombination) [66–68].”
From Mind the gap: keeping UV lesions in check (2011) · cites this paper as [67]
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“In fact, S phase can be completed in the absence of PRR, but the gapped replicated DNA needs to be refilled by PRR in G2 in order to warrant cell survival [66,67].”
From Mind the gap: keeping UV lesions in check (2011) · cites this paper as [67]
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Janke, C., Magiera, M., Rathfelder, N., Taxis, C., Reber, S., Maekawa, H., Moreno-Borchart, A. C., Doenges, G., Schwob, E., Schiebel, E., et al. (2004) · Yeast · doi:10.1002/yea.1142 · Cited by 2,251
RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO
Hoege, C., Pfander, B., Moldovan, G., Pyrowolakis, G., & Jentsch, S. (2002) · Nature · doi:10.1038/nature00991 · Cited by 2,202
EUKARYOTIC TRANSLESION SYNTHESIS DNA POLYMERASES: Specificity of Structure and Function
Prakash, S., Johnson, R. E., & Prakash, L. (2005) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.74.082803.133250 · Cited by 1,020
Jackson, D., & Pombo, A. (1998) · Journal of Cell Biology · doi:10.1083/jcb.140.6.1285 · Cited by 881
Control of spontaneous and damage-induced mutagenesis by SUMO and ubiquitin conjugation
Stelter, P., & Ulrich, H. D. (2003) · Nature · doi:10.1038/nature01965 · Cited by 850
Self-citationInteraction of Human DNA Polymerase η with Monoubiquitinated PCNA
Kannouche, P. L., Wing, J., & Lehmann, A. R. (2004) · Molecular Cell · doi:10.1016/s1097-2765(04)00259-x · Cited by 845
Eukaryotic polymerases ι and ζ act sequentially to bypass DNA lesions
Johnson, R. E., Washington, M. T., Haracska, L., Prakash, S., & Prakash, L. (2000) · Nature · doi:10.1038/35023030 · Cited by 632
Lopes, M., Foiani, M., & Sogo, J. M. (2006) · Molecular Cell · doi:10.1016/j.molcel.2005.11.015 · Cited by 563
Watanabe, K., Tateishi, S., Kawasuji, M., Tsurimoto, T., Inoue, H., & Yamaizumi, M. (2004) · The EMBO Journal · doi:10.1038/sj.emboj.7600383 · Cited by 538
Crosstalk between SUMO and Ubiquitin on PCNA Is Mediated by Recruitment of the Helicase Srs2p
Papouli, E., Chen, S., Davies, A. A., Huttner, D., Krejčí, L., Sung, P., & Ulrich, H. D. (2005) · Molecular Cell · doi:10.1016/j.molcel.2005.06.001 · Cited by 522
Self-citationPostreplication repair of DNA in ultraviolet-irradiated mammalian cells
Lehmann, A. R. (1972) · Journal of Molecular Biology · doi:10.1016/0022-2836(72)90418-4 · Cited by 437
Liang, C., & Stillman, B. (1997) · Genes & Development · doi:10.1101/gad.11.24.3375 · Cited by 358
Prakash, L. (1981) · Molecular and General Genetics MGG · doi:10.1007/bf00352525 · Cited by 291
Bellı́, G. (1998) · Nucleic Acids Research · doi:10.1093/nar/26.4.942 · Cited by 285
Two-polymerase mechanisms dictate error-free and error-prone translesion DNA synthesis in mammals
Shachar, S., Ziv, O., Avkin, S., Adar, S., Wittschieben, J., Reißner, T., Chaney, S., Friedberg, E. C., Wang, Z., Carell, T., et al. (2009) · The EMBO Journal · doi:10.1038/emboj.2008.281 · Cited by 284
Activation of Ubiquitin-Dependent DNA Damage Bypass Is Mediated by Replication Protein A
Davies, A. A., Huttner, D., Daigaku, Y., Chen, S., & Ulrich, H. D. (2008) · Molecular Cell · doi:10.1016/j.molcel.2007.12.016 · Cited by 281
Self-citationEdmunds, C. E., Simpson, L. J., & Sale, J. E. (2008) · Molecular Cell · doi:10.1016/j.molcel.2008.03.024 · Cited by 239
Ubiquitinated proliferating cell nuclear antigen activates translesion DNA polymerases η and REV1
Garg, P., & Burgers, P. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0505949102 · Cited by 236
The RAD6 DNA repair pathway in Saccharomyces cerevisiae: What does it do, and how does it do it?
Lawrence, C. W. (1994) · BioEssays · doi:10.1002/bies.950160408 · Cited by 188
Zhang, H., & Lawrence, C. W. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0504586102 · Cited by 185
Waters, L. S., & Walker, G. C. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0510167103 · Cited by 176
Haracska, L., Unk, I., Prakash, L., & Prakash, S. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0510924103 · Cited by 136
Repair of Pyrimidine Dimer Damage Induced in Yeast by Ultraviolet Light
Resnick, M. A., & Setlow, J. K. (1972) · Journal of Bacteriology · doi:10.1128/jb.109.3.979-986.1972 · Cited by 122
A genomic view of eukaryotic DNA replication
MacAlpine, D. M., & Bell, S. P. (2005) · Chromosome Research · doi:10.1007/s10577-005-1508-1 · Cited by 118
Lesion bypass in yeast cells: Pol η participates in a multi‐DNA polymerase process
Bresson, A., & Fuchs, R. P. P. (2002) · The EMBO Journal · doi:10.1093/emboj/cdf363 · Cited by 112
Parker, J. L., Bielen, A. B., Đikić, I., & Ulrich, H. D. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkl1102 · Cited by 108
Self-citationThe formation of pyrimidine dimers in the DNA of fungi and bacteria
Unrau, P., Wheatcroft, R., Cox, B. S., & Olive, T. (1973) · Biochimica et Biophysica Acta (BBA) - Nucleic Acids and Protein Synthesis · doi:10.1016/0005-2787(73)90065-8 · Cited by 86
New vectors for simplified construction of BrdU‐Incorporating strains of Saccharomyces cerevisiae
Viggiani, C. J., & Aparicio, O. M. (2006) · Yeast · doi:10.1002/yea.1406 · Cited by 82
RAD6-RAD18-RAD5-pathway-dependent tolerance to chronic low-dose ultraviolet light
Hishida, T., Kubota, Y., Carr, A. M., & Iwasaki, H. (2009) · Nature · doi:10.1038/nature07580 · Cited by 77
DNA synthesis in UV-irradiated yeast
di Caprio, L., & Cox, B. S. (1981) · Mutation Research · doi:10.1016/0027-5107(81)90139-1 · Cited by 71
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Metadata
- Authors
- Daigaku, Y., Davies, A. A., & Ulrich, H. D.
- Affiliations
- Cancer Research UK (GB)
- Corresponding author
- Ulrich, Helle D.
- Venue
- Nature
- Published
- 2010-05-09
- Volume
- 465
- Issue
- 7300
- Pages
- 951-955
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- PMC
- PMC2888004
- OpenAlex
- W2080574942
- Cited by
- 259
- References
- 30
- Citations by year
- 2026: 8 · 2025: 8 · 2024: 9 · 2023: 4 · 2022: 6 · 2021: 15 · 2020: 15 · 2019: 13 · 2018: 21 · 2017: 16 · 2016: 26 · 2015: 15 · 2014: 18 · 2013: 22 · 2012: 27
- FWCI
- 11.08
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- Funders
- Cancer Research UK (A7123, A10152)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ubiquitin and proteasome pathways
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Keywords
- DNA damage bypass, translesion synthesis, error-free bypass, genome replication, S phase, Saccharomyces cerevisiae, replication fork, DNA polymerase, monoubiquitylation, polyubiquitination, template switching, sister chromatids, cell cycle synchronization
- MeSH terms
- Cell Cycle, Chromatin, DNA Damage, DNA Replication, Saccharomyces cerevisiae, Time Factors, Ultraviolet Rays, Genome, Proliferating Cell Nuclear Antigen, Ubiquitin, Saccharomyces cerevisiae Proteins, Ubiquitin-Conjugating Enzymes
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