Ubiquitin-dependent regulation of COPII coat size and function
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Packaging of proteins from the endoplasmic reticulum into COPII vesicles is essential for secretion. In cells, most COPII vesicles are approximately 60-80 nm in diameter, yet some must increase their size to accommodate 300-400 nm procollagen fibres or chylomicrons. Impaired COPII function results in collagen deposition defects, cranio-lenticulo-sutural dysplasia, or chylomicron retention disease, but mechanisms to enlarge COPII coats have remained elusive. Here, we identified the ubiquitin ligase CUL3-KLHL12 as a regulator of COPII coat formation. CUL3-KLHL12 catalyses the monoubiquitylation of the COPII-component SEC31 and drives the assembly of large COPII coats. As a result, ubiquitylation by CUL3-KLHL12 is essential for collagen export, yet less important for the transport of small cargo. We conclude that monoubiquitylation controls the size and function of a vesicle coat.
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KLHL12 can assemble with specific co-adaptors to monoubiquitylate SEC31 for collagen trafficking.
“it can also assemble with specific co-adaptors to monoubiquitylate the COPII component SEC31 for collagen trafficking 90,91,92”
From Targeted protein degradation: expanding the toolbox (2019) · cites this paper as [92]
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Metastasis: from dissemination to organ-specific colonization
Nguyen, D. X., Bos, P. D., & Massagué, J. (2009) · Nature reviews. Cancer · doi:10.1038/nrc2622 · Cited by 2,637 · see citing works
Systematic and Quantitative Assessment of the Ubiquitin-Modified Proteome
Kim, W., Bennett, E. J., Huttlin, E. L., Guo, A., Li, J., Possemato, A. P., Sowa, M. E., Rad, R., Rush, A. J., Comb, M. J., et al. (2011) · Molecular Cell · doi:10.1016/j.molcel.2011.08.025 · Cited by 1,614 · see citing works
Control of the Embryonic Stem Cell State
Young, R. A. (2011) · Cell · doi:10.1016/j.cell.2011.01.032 · Cited by 1,189 · see citing works
Myocardial Infarction Genetics Consortium (2009) · Nature Genetics · doi:10.1038/ng.327 · Cited by 1,088 · see citing works
Cancer as an overhealing wound: an old hypothesis revisited
Schäfer, M., & Werner, S. (2008) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2455 · Cited by 947 · see citing works
Furukawa, M., & Xiong, Y. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.25.1.162-171.2005 · Cited by 746 · see citing works
Latent Bone Metastasis in Breast Cancer Tied to Src-Dependent Survival Signals
Zhang, X. H.-F., Wang, Q., Gerald, W. L., Hudis, C. A., Norton, L., Smid, M., Foekens, J. A., & Massagué, J. (2009) · Cancer Cell · doi:10.1016/j.ccr.2009.05.017 · Cited by 663 · see citing works
Activation of Phosphoinositide 3-OH Kinase by the α6β4 Integrin Promotes Carcinoma Invasion
Shaw, L. M., Rabinovitz, I., Wang, H. H.-F., Toker, A., & Mercurio, A. M. (1997) · Cell · doi:10.1016/s0092-8674(00)80486-9 · Cited by 613 · see citing works
Stephens, L., Sutherland, A. E., Klimanskaya, I. V., Andrieux, A., Meneses, J., Pedersen, R. A., & Damsky, C. H. (1995) · Genes & Development · doi:10.1101/gad.9.15.1883 · Cited by 596 · see citing works
Integrins: masters and slaves of endocytic transport
Caswell, P. T., Vadrevu, S., & Norman, J. C. (2009) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2799 · Cited by 527 · see citing works
Xu, L., Yue, W., Reboul, J., Vaglio, P., Shin, T.-H., Vidal, M., Elledge, S. J., & Harper, J. W. (2003) · Nature · doi:10.1038/nature01985 · Cited by 497 · see citing works
The BTB protein MEL-26 is a substrate-specific adaptor of the CUL-3 ubiquitin-ligase
Pintard, L., Willis, J. H., Willems, A. R., Johnson, J.-L., Srayko, M., Kurz, T., Luke-Glaser, S., Mains, P. E., Tyers, M., Bowerman, B. A., et al. (2003) · Nature · doi:10.1038/nature01959 · Cited by 431 · see citing works
Cullin-3 targets cyclin E for ubiquitination and controls S phase in mammalian cellsPreprint
Singer, J. D., Gurian-West, M., Clurman, B. E., & Roberts, J. M. (1999) · Genes & Development · doi:10.1101/gad.13.18.2375 · Cited by 404 · see citing works
Global Identification of Modular Cullin-RING Ligase Substrates
Emanuele, M. J., Elia, A. E. H., Xu, Q., Thoma, C. R., Izhar, L., Leng, Y., Guo, A., Chen, Y., Rush, A. J., Hsu, P. W., et al. (2011) · Cell · doi:10.1016/j.cell.2011.09.019 · Cited by 403 · see citing works
TANGO1 Facilitates Cargo Loading at Endoplasmic Reticulum Exit Sites
Saito, K., Chen, M., Bard, F., Chen, S., Zhou, H., Woodley, D. T., Polischuk, R., Schekman, R. W., & Malhotra, V. (2009) · Cell · doi:10.1016/j.cell.2008.12.025 · Cited by 379 · see citing works
Self-citationAngers, S., Thorpe, C. J., Biechele, T. L., Goldenberg, S. J., Zheng, N., MacCoss, M. J., & Moon, R. T. (2006) · Nature Cell Biology · doi:10.1038/ncb1381 · Cited by 364 · see citing works
Transmembrane collagen receptors
Leitinger, B. (2011) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-092910-154013 · Cited by 354 · see citing works
BTB/POZ Domain Proteins Are Putative Substrate Adaptors for Cullin 3 Ubiquitin Ligases
Geyer, R. K., Wee, S., Anderson, S., Yates, J. R., & Wolf, D. A. (2003) · Molecular Cell · doi:10.1016/s1097-2765(03)00341-1 · Cited by 339 · see citing works
Zhu, W., Cowie, A., Wasfy, G. W., Penn, L. Z., Leber, B. F., & Andrews, D. W. (1996) · The EMBO Journal · doi:10.1002/j.1460-2075.1996.tb00788.x · Cited by 327 · see citing works
Boyadjiev, S. A., Fromme, J. C., Ben, J., Chong, S. S., Nauta, C., Hur, D. J., Zhang, G., Hamamoto, S., Schekman, R. W., Ravazzola, M., et al. (2006) · Nature Genetics · doi:10.1038/ng1876 · Cited by 314 · see citing works
Self-citationStructure and Organization of Coat Proteins in the COPII Cage
Fath, S., Mancias, J. D., Bi, X., & Goldberg, J. D. (2007) · Cell · doi:10.1016/j.cell.2007.05.036 · Cited by 304 · see citing works
Identification of a physiological E2 module for the human anaphase-promoting complex
Williamson, A. P., Wickliffe, K. E., Mellone, B. G., Song, L., Karpen, G. H., & Rapé, M. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0907887106 · Cited by 294 · see citing works
Self-citationStructural Basis for Cargo Regulation of COPII Coat Assembly
Stagg, S. M., LaPointe, P., Razvi, A., Gürkan, C., Potter, C. S., Carragher, B. O., & Balch, W. E. (2008) · Cell · doi:10.1016/j.cell.2008.06.024 · Cited by 274 · see citing works
Chen, Y., Yang, Z., Meng, M., Zhao, Y., Dong, N., Yan, H., Liu, L., Ding, M., Peng, H. B., & Shao, F. (2009) · Molecular Cell · doi:10.1016/j.molcel.2009.09.004 · Cited by 270 · see citing works
Sumara, I., Quadroni, M., Frei, C., Olma, M. H., Sumara, G., Ricci, R., & Peter, M. (2007) · Developmental Cell · doi:10.1016/j.devcel.2007.03.019 · Cited by 230 · see citing works
COPII-mediated vesicle formation at a glance
Jensen, D., & Schekman, R. W. (2010) · Journal of Cell Science · doi:10.1242/jcs.069773 · Cited by 229 · see citing works
Self-citationGlobal defects in collagen secretion in a Mia3/TANGO1 knockout mouse
Wilson, D. G., Phamluong, K., Li, L., Sun, M., Cao, T. C., Liu, P. S., Modrusan, Z. D., Sandoval, W. N., Rangell, L. K., Carano, R. A. D., et al. (2011) · The Journal of Cell Biology · doi:10.1083/jcb.201007162 · Cited by 197 · see citing works
The Genetic Basis of a Craniofacial Disease Provides Insight into COPII Coat Assembly
Fromme, J. C., Ravazzola, M., Hamamoto, S., Balwi, M. A. A., Eyaid, W., Boyadjiev, S. A., Cosson, P., Schekman, R. W., & Orci, L. (2007) · Developmental Cell · doi:10.1016/j.devcel.2007.10.005 · Cited by 190 · see citing works
Self-citationSecretory COPII coat component Sec23a is essential for craniofacial chondrocyte maturation
Lang, M. R., Lapierre, L. A., Frotscher, M., Goldenring, J. R., & Knapik, E. W. (2006) · Nature Genetics · doi:10.1038/ng1880 · Cited by 190 · see citing works
Cell-Cell and Cell-Extracellular Matrix Interactions Regulate Embryonic Stem Cell Differentiation
Chen, S. S., Fitzgerald, W., Zimmerberg, J. J., Kleinman, H. K., & Margolis, L. B. (2007) · Stem Cells · doi:10.1634/stemcells.2006-0419 · Cited by 190 · see citing works
Townley, A. K., Feng, Y., Schmidt, K., Carter, D. A., Porter, R., Verkade, P., & Stephens, D. J. (2008) · Journal of Cell Science · doi:10.1242/jcs.031070 · Cited by 174 · see citing works
Saito, K., Yamashiro, K., Ichikawa, Y., Erlmann, P., Kontani, K., Malhotra, V., & Katada, T. (2011) · Molecular Biology of the Cell · doi:10.1091/mbc.e11-02-0143 · Cited by 173 · see citing works
Organisation of human ER-exit sites: requirements for the localisation of Sec16 to transitional ER
Hughes, H., Budnik, A., Schmidt, K., Palmer, K. J., Mantell, J., Noakes, C., Johnson, A., Carter, D. A., Verkade, P., Watson, P., et al. (2009) · Journal of Cell Science · doi:10.1242/jcs.044032 · Cited by 160 · see citing works
Sarmah, S., Barrallo‐Gimeno, A., Melville, D. B., Topczewski, J., Solnica‐Krezel, L., & Knapik, E. W. (2010) · PLoS ONE · doi:10.1371/journal.pone.0010367 · Cited by 141 · see citing works
Stephens, D. J., & Pepperkok, R. (2002) · Journal of Cell Science · doi:10.1242/jcs.115.6.1149 · Cited by 125 · see citing works
COPII-coated vesicles: flexible enough for large cargo?
Fromme, J. C., & Schekman, R. W. (2005) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2005.06.004 · Cited by 103 · see citing works
Self-citationGenetic Analyses of Integrin SignalingPreprint
Wickstrom, S. A., Radovanac, K., & Fassler, R. (2010) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a005116 · Cited by 95 · see citing works
Geddis, A. E., & Prockop, D. J. (1993) · Matrix · doi:10.1016/s0934-8832(11)80045-4 · Cited by 80 · see citing works
Identification of specific autoantigens in Sjögren's syndrome by SEREX
Uchida, K., Akita, Y., Matsuo, K., Fujiwara, S., Nakagawa, A., Kazaoka, Y., Hachiya, H., Naganawa, Y., Oh‐iwa, I., Ohura, K., et al. (2005) · Immunology · doi:10.1111/j.1365-2567.2005.02197.x · Cited by 72 · see citing works
Ohisa, S., Inohaya, K., Takano, Y., & Kudō, A. (2010) · Developmental Biology · doi:10.1016/j.ydbio.2010.03.016 · Cited by 58 · see citing works
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Ubiquitin ligases: structure, function, and regulation
Zheng, N., & Shabek, N. (2017) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-060815-014922 · Cited by 1,499 · see citing works
The increasing complexity of the ubiquitin code
Yau, R., & Rape, M. (2016) · Nature Cell Biology · doi:10.1038/ncb3358 · Cited by 1,054 · see citing works
Targeted protein degradation: expanding the toolbox
Schapira, M., Calabrese, M. F., Bullock, A. N., & Crews, C. M. (2019) · Nature Reviews Drug Discovery · doi:10.1038/s41573-019-0047-y · Cited by 960 · see citing works
Ubiquitylation at the crossroads of development and disease
Rapé, M. (2017) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm.2017.83 · Cited by 608 · see citing works
Organization of the ER–Golgi interface for membrane traffic control
Brandizzí, F., & Barlowe, C. K. (2013) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3588 · Cited by 523 · see citing works
Protein quality control in the secretory pathway
Sun, Z., & Brodsky, J. L. (2019) · The Journal of Cell Biology · doi:10.1083/jcb.201906047 · Cited by 381 · see citing works
Principles of Ubiquitin-Dependent Signaling
Oh, E., Akopian, D., & Rape, M. (2018) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-100617-062802 · Cited by 339 · see citing works
Secretory Protein Biogenesis and Traffic in the Early Secretory Pathway
Barlowe, C. K., & Miller, E. A. (2013) · Genetics · doi:10.1534/genetics.112.142810 · Cited by 321 · see citing works
Building and remodelling Cullin–RING E3 ubiquitin ligases
Lydeard, J. R., Schulman, B. A., & Harper, J. W. (2013) · The EMBO Reports · doi:10.1038/embor.2013.173 · Cited by 327 · see citing works
Structural basis for Cul3 protein assembly with the BTB-Kelch family of E3 ubiquitin ligases
Canning, P., Cooper, C. D. O., Krojer, T., Murray, J. W., Pike, A. C. W., Chaikuad, A., Keates, T., Thangaratnarajah, C., Hojzan, V., Marsden, B. D., et al. (2013) · Journal of Biological Chemistry · doi:10.1074/jbc.m112.437996 · Cited by 284 · see citing works
“After KEAP1, the best characterized protein is KLHL12, which modulates COPII assembly for collagen export (27) and also ubiquitylates both the dopamine D4 receptor (28) and dishevelled (29).”
Genschik, P., Sumara, I., & Lechner, E. (2013) · The EMBO Journal · doi:10.1038/emboj.2013.173 · Cited by 278 · see citing works
Protein sorting at the ER–Golgi interface
Gómez‐Navarro, N., & Miller, E. A. (2016) · The Journal of Cell Biology · doi:10.1083/jcb.201610031 · Cited by 276 · see citing works
Two Distinct Types of E3 Ligases Work in Unison to Regulate Substrate Ubiquitylation
Scott, D. C., Rhee, D. Y., Duda, D. M., Kelsall, I. R., Olszewski, J. L., Paulo, J. A., de Jong, A., Ovaa, H., Alpi, A. F., Harper, J. W., et al. (2016) · Cell · doi:10.1016/j.cell.2016.07.027 · Cited by 229 · see citing works
Ge, L., Zhang, M., & Schekman, R. W. (2014) · eLife · doi:10.7554/elife.04135 · Cited by 208 · see citing works
Self-citationControl of the negative IREStrans-acting factor KHSRP by ubiquitination
Kung, Y.-A., Hung, C.-T., Chien, K., & Shih, S. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw1042 · Cited by 204 · see citing works
A Cellular Mechanism to Detect and Alleviate Reductive Stress.
Manford, A., Rodríguez-Pérez, F., Shih, K. Y., Shi, Z., Berdan, C. A., Choe, M., Titov, D., Nomura, D., & Rapé, M. (2020) · Cell · doi:10.1016/j.cell.2020.08.034 · Cited by 185 · see citing works
Salivary Exosomes: Emerging Roles in Systemic Disease
Han, Y., Jia, L., Zheng, Y., & Li, W. (2018) · International Journal of Biological Sciences · doi:10.7150/ijbs.25018 · Cited by 193 · see citing works
Cell-fate determination by ubiquitin-dependent regulation of translation
Werner, A., Iwasaki, S., McGourty, C. A., Medina-Ruiz, S., Teerikorpi, N., Fedrigo, I., Ingolia, N. T., & Rape, M. (2015) · Nature · doi:10.1038/nature14978 · Cited by 184 · see citing works
Yuan, W.-C., Lee, Y.-R., Lin, S., Chang, L.-Y., Tan, Y. P., Hung, C., Kuo, J., Liu, C., Lin, M.-Y., Xu, M., et al. (2014) · Molecular Cell · doi:10.1016/j.molcel.2014.03.035 · Cited by 182 · see citing works
A molecular ensemble in the rER for procollagen maturation
Ishikawa, Y., & Bächinger, H. P. (2013) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2013.04.008 · Cited by 176 · see citing works
Raote, I., Bellido, M., Santos, A. J. M., Foresti, O., Zhang, C., Parajo, M. F. G., Campelo, F., & Malhotra, V. (2018) · eLife · doi:10.7554/elife.32723 · Cited by 164 · see citing works
Noncanonical autophagy at ER exit sites regulates procollagen turnover
Omari, S., Makareeva, E., Roberts-Pilgrim, A. M., Mirigian, L. S., Jarník, M., Ott, C. M., Lippincott‐Schwartz, J., & Leikin, S. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1814552115 · Cited by 164 · see citing works
Endoplasmic Reticulum–Associated Degradation and Lipid Homeostasis
Stevenson, J., Huang, E. Y., & Olzmann, J. A. (2016) · Annual Review of Nutrition · doi:10.1146/annurev-nutr-071715-051030 · Cited by 158 · see citing works
The Pathway of Collagen Secretion
Malhotra, V., & Erlmann, P. (2015) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-100913-013002 · Cited by 154 · see citing works
A Rab10-Dependent Mechanism for Polarized Basement Membrane Secretion during Organ Morphogenesis
Lerner, D. W., McCoy, D., Isabella, A. J., Mahowald, A. P., Gerlach, G. F., Chaudhry, T. A., & Horne‐Badovinac, S. (2013) · Developmental Cell · doi:10.1016/j.devcel.2012.12.005 · Cited by 152 · see citing works
Vesicle-mediated export from the ER: COPII coat function and regulation
D’Arcangelo, J. G., Stahmer, K. R., & Miller, E. A. (2013) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2013.02.003 · Cited by 147 · see citing works
COPII — a flexible vesicle formation system
Miller, E. A., & Schekman, R. W. (2013) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2013.04.005 · Cited by 150 · see citing works
Self-citationStructural basis and regulation of the reductive stress response
Manford, A. G., Mena, E. L., Shih, K. Y., Gee, C. L., McMinimy, R., Martínez-González, B., Sherriff, R., Lew, B., Zoltek, M., Rodríguez-Pérez, F., et al. (2021) · Cell · doi:10.1016/j.cell.2021.09.002 · Cited by 152 · see citing works
Contact of cis-Golgi with ER exit sites executes cargo capture and delivery from the ER
Kurokawa, K., Okamoto, M., & Nakano, A. (2014) · Nature Communications · doi:10.1038/ncomms4653 · Cited by 149 · see citing works
Assembly of COPI and COPII Vesicular Coat Proteins on Membranes
Béthune, J., & Wieland, F. (2018) · Annual Review of Biophysics · doi:10.1146/annurev-biophys-070317-033259 · Cited by 149 · see citing works
COPII‐mediated trafficking at the ER/ERGIC interface
Peotter, J. L., Kasberg, W., Pustova, I., & Audhya, A. (2019) · Traffic · doi:10.1111/tra.12654 · Cited by 143 · see citing works
The structure of the COPII transport-vesicle coat assembled on membranes
Zanetti, G., Prinz, S., Daum, S., Meister, A., Schekman, R. W., Bacia, K., & Briggs, J. A. G. (2013) · eLife · doi:10.7554/elife.00951 · Cited by 131 · see citing works
Self-citationLord, C. L., Ferro‐Novick, S., & Miller, E. A. (2013) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a013367 · Cited by 131 · see citing works
KLHL40 deficiency destabilizes thin filament proteins and promotes nemaline myopathy
Garg, A., O’Rourke, J., Long, C., Doering, J., Ravenscroft, G., Bezprozvannaya, S., Nelson, B. R., Beetz, N., Li, L., Chen, S., et al. (2014) · Journal of Clinical Investigation · doi:10.1172/jci74994 · Cited by 127 · see citing works
Regulation of the CUL3 Ubiquitin Ligase by a Calcium-Dependent Co-adaptor
McGourty, C. A., Akopian, D., Walsh, C., Gorur, A., Werner, A., Schekman, R., Bautista, D., & Rape, M. (2016) · Cell · doi:10.1016/j.cell.2016.09.026 · Cited by 126 · see citing works
Self-citationSelective mRNA translation during eIF2 phosphorylation induces expression of IBTKα
Baird, T. D., Palam, L. R., Fusakio, M. E., Willy, J. A., Davis, C. M., McClintick, J. N., Anthony, T. G., & Wek, R. C. (2014) · Molecular Biology of the Cell · doi:10.1091/mbc.e14-02-0704 · Cited by 122 · see citing works
Rogers, M. A., Maldonado, N., Hutcheson, J. D., Goettsch, C., Goto, S., Yamada, I., Faits, T., Sesaki, H., Aikawa, M., & Aikawa, E. R. (2017) · Circulation Research · doi:10.1161/circresaha.116.310293 · Cited by 122 · see citing works
Collagen Biosynthesis, Processing, and Maturation in Lung Ageing
Onursal, C., Dick, E., Angelidis, I., Schiller, H. B., & Staab-Weijnitz, C. A. (2021) · Frontiers in Medicine · doi:10.3389/fmed.2021.593874 · Cited by 122 · see citing works
Differential role of TIMP2 and TIMP3 in cardiac hypertrophy, fibrosis, and diastolic dysfunction
Dong, F., Takawale, A. R., Basu, R., Patel, V. B., Lee, J., Kandalam, V., Wang, X., Oudit, G. Y., & Kassiri, Z. (2014) · Cardiovascular Research · doi:10.1093/cvr/cvu072 · Cited by 120 · see citing works
SEC24A deficiency lowers plasma cholesterol through reduced PCSK9 secretion
Chen, X., Wang, H., Pahuja, K. B., Zhang, P., Meng, Z., Ma, D., Bai, Y., Liu, H.-H., Adams, E., Baines, A. C., et al. (2013) · eLife · doi:10.7554/elife.00444 · Cited by 118 · see citing works
Self-citationSoo, K. Y., Halloran, M. A., Sundaramoorthy, V., Parakh, S., Toth, R. P., Southam, K. A., McLean, C., Lock, P., King, A. E., Farg, M. A., et al. (2015) · Acta Neuropathologica · doi:10.1007/s00401-015-1468-2 · Cited by 117 · see citing works
Ishikawa, Y., Ito, S., Nagata, K., Sakai, L. Y., & Bächinger, H. P. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1609571113 · Cited by 119 · see citing works
Ubiquitylation-dependent localization of PLK1 in mitosis
Beck, J., Maerki, S., Posch, M., Metzger, T., Persaud, A. K., Scheel, H., Hofmann, K., Rotin, D., Pedrioli, P. G. A., Swedlow, J. R., et al. (2013) · Nature Cell Biology · doi:10.1038/ncb2695 · Cited by 119 · see citing works
TFG clusters COPII‐coated transport carriers and promotes early secretory pathway organization
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Santos, A. J. M., Nogueira, C., Bellido, M., & Malhotra, V. (2016) · The Journal of Cell Biology · doi:10.1083/jcb.201603072 · Cited by 111 · see citing works
TANGO1 recruits ERGIC membranes to the endoplasmic reticulum for procollagen export
Santos, A. J. M., Raote, I., Scarpa, M., Brouwers, N., & Malhotra, V. (2015) · eLife · doi:10.7554/elife.10982 · Cited by 114 · see citing works
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Fenech, E. J., Lari, F., Charles, P. D., Fischer, R., Laétitia-Thézénas, M., Bagola, K., Paton, A. W., Paton, J. C., Gyrd‐Hansen, M., Kessler, B. M., et al. (2020) · eLife · doi:10.7554/elife.57306 · Cited by 104 · see citing works
Concentration of Sec12 at ER exit sites via interaction with cTAGE5 is required for collagen export
Saito, K., Yamashiro, K., Shimazu, N., Tanabe, T., Kontani, K., & Katada, T. (2014) · The Journal of Cell Biology · doi:10.1083/jcb.201312062 · Cited by 107 · see citing works
Regulation of endocytic clathrin dynamics by cargo ubiquitination
Henry, A. G., Hislop, J. N., Grove, J., Thorn, K., Marsh, M., & von Zastrow, M. (2012) · Developmental Cell · doi:10.1016/j.devcel.2012.08.003 · Cited by 100 · see citing works
COPII-coated membranes function as transport carriers of intracellular procollagen I
Gorur, A., Yuan, L., Kenny, S. J., Baba, S., Xu, K., & Schekman, R. W. (2017) · The Journal of Cell Biology · doi:10.1083/jcb.201702135 · Cited by 99 · see citing works
Self-citationRetrograde Traffic from the Golgi to the Endoplasmic ReticulumPreprint
Spang, A. (2013) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a013391 · Cited by 98 · see citing works
Cab45 is required for Ca2+-dependent secretory cargo sorting at the trans-Golgi network
von Blume, J., Alleaume, A.-M., Kienzle, C., Carreras‐Sureda, A., Valverde, M. A., & Malhotra, V. (2012) · The Journal of Cell Biology · doi:10.1083/jcb.201207180 · Cited by 96 · see citing works
Tango1 spatially organizes ER exit sites to control ER export
Liu, M., Feng, Z. J., Ke, H., Liu, Y., Sun, T., Dai, J., Cui, W., & Pastor-Pareja, J. C. (2017) · The Journal of Cell Biology · doi:10.1083/jcb.201611088 · Cited by 92 · see citing works
Hanna, M. G., Block, S., Frankel, E. B., Hou, F., Johnson, A. J., Yuan, L., Knight, G. T., Moresco, J. J., Yates, J. R., Ashton, R. S., et al. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1709120114 · Cited by 91 · see citing works
Self-citationGenau, H. M., Huber, J., Baschieri, F., Akutsu, M., Dötsch, V., Farhan, H., Rogov, V. V., & Behrends, C. (2015) · Molecular Cell · doi:10.1016/j.molcel.2014.12.040 · Cited by 91 · see citing works
Anti‐kelch‐like 12 and anti‐hexokinase 1: novel autoantibodies in primary biliary cirrhosis
Norman, G. L., Yang, C., Ostendorff, H. P., Shums, Z., Lim, M. J., Wang, J., Awad, A., Hirschfield, G. M., Milkiewicz, P., Bloch, D. B., et al. (2015) · Liver International · doi:10.1111/liv.12690 · Cited by 87 · see citing works
The Back and Forth of Cargo Exit from the Endoplasmic Reticulum
Geva, Y., & Schuldiner, M. (2014) · Current Biology · doi:10.1016/j.cub.2013.12.008 · Cited by 89 · see citing works
Kelch-like proteins: Physiological functions and relationships with diseases
Shi, X., Xiang, S., Cao, J., Zhu, H., Yang, B., He, Q., & Ying, M. (2019) · Pharmacological Research · doi:10.1016/j.phrs.2019.104404 · Cited by 88 · see citing works
COMP-assisted collagen secretion - a novel intracellular function required for fibrosis
Schulz, J.-N., Nüchel, J., Niehoff, A., Bloch, W., Schönborn, K., Hayashi, S., Kamper, M., Brinckmann, J., Plomann, M., Paulsson, M., et al. (2016) · Journal of Cell Science · doi:10.1242/jcs.180216 · Cited by 88 · see citing works
Dimerization quality control ensures neuronal development and survival
Mena, E. L., Kjolby, R. A. S., Saxton, R. A., Werner, A. A., Lew, B. G., Boyle, J. M., Harland, R. M., & Rapé, M. (2018) · Science · doi:10.1126/science.aap8236 · Cited by 83 · see citing works
Collagen transport and related pathways in Osteogenesis Imperfecta
Claeys, L., Storoni, S., Eekhoff, E. M. W., Elting, M. W., Wisse, L. E., Pals, G., Bravenboer, N., Maugeri, A., & Micha, D. (2021) · Human Genetics · doi:10.1007/s00439-021-02302-2 · Cited by 85 · see citing works
Nogueira, C., Erlmann, P., Villeneuve, J., Santos, A. J. M., Martínez‐Alonso, E., Martínez‐Menárguez, J. A., & Malhotra, V. (2014) · eLife · doi:10.7554/elife.02784 · Cited by 85 · see citing works
Fighting the Fiber: Targeting Collagen in Lung Fibrosis
Staab-Weijnitz, C. A. (2021) · American Journal of Respiratory Cell and Molecular Biology · doi:10.1165/rcmb.2021-0342tr · Cited by 83 · see citing works
VLDL Biogenesis and Secretion: It Takes a Village
Zwol, W. H.-V., van de Sluis, B., Ginsberg, H. N., & Kuivenhoven, J. A. (2024) · Circulation Research · doi:10.1161/circresaha.123.323284 · Cited by 83 · see citing works
Tunnels for Protein Export from the Endoplasmic Reticulum
Raote, I., & Malhotra, V. (2021) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-080120-022017 · Cited by 82 · see citing works
Functional analysis of Cullin 3 E3 ligases in tumorigenesis
Cheng, J., Guo, J., Wang, Z. P., North, B. J., Tao, K., Dai, X., & Wei, W. (2017) · Biochimica et Biophysica Acta (BBA) - Reviews on Cancer · doi:10.1016/j.bbcan.2017.11.001 · Cited by 80 · see citing works
ER-to-Golgi Transport: A Sizeable Problem
McCaughey, J., & Stephens, D. J. (2019) · Trends in Cell Biology · doi:10.1016/j.tcb.2019.08.007 · Cited by 77 · see citing works
Cullin 3-Based Ubiquitin Ligases as Master Regulators of Mammalian Cell Differentiation
Dubiel, W., Dubiel, D., Wolf, D. A., & Naumann, M. (2017) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2017.11.010 · Cited by 73 · see citing works
Crystal Structure of KLHL3 in Complex with Cullin3
Ji, A. X., & Privé, G. G. (2013) · PLoS ONE · doi:10.1371/journal.pone.0060445 · Cited by 76 · see citing works
Exiting the ER: what we know and what we don't.
Venditti, R., Wilson, C., & Matteis, M. D. D. (2014) · Trends in Cell Biology · doi:10.1016/j.tcb.2013.08.005 · Cited by 72 · see citing works
Understanding Cullin-RING E3 Biology through Proteomics-based Substrate Identification
Harper, J. W., & Tan, M.-K. M. (2012) · Molecular & Cellular Proteomics · doi:10.1074/mcp.r112.021154 · Cited by 71 · see citing works
Protein monoubiquitylation: targets and diverse functions
Nakagawa, T., & Nakayama, K. (2015) · Genes to Cells · doi:10.1111/gtc.12250 · Cited by 69 · see citing works
Thompson, J. W., Nagel, J., Sjouke Hoving, B., Gerrits, B., Bauer, A., Thomas, J. R., Kirschner, M. W., Schirle, M., & Luchansky, S. J. (2014) · Journal of Biological Chemistry · doi:10.1074/jbc.m114.573352 · Cited by 66 · see citing works
Saito, K., Maeda, M., & Katada, T. (2017) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2017.00075 · Cited by 66 · see citing works
TFG Promotes Organization of Transitional ER and Efficient Collagen Secretion
McCaughey, J., Miller, V. J., Stevenson, N. L., Brown, A. K., Budnik, A., Heesom, K. J., Alibhai, D., & Stephens, D. J. (2016) · Cell Reports · doi:10.1016/j.celrep.2016.04.062 · Cited by 65 · see citing works
Silencing of Mammalian Sar1 Isoforms Reveals COPII ‐Independent Protein Sorting and Transport
Cutrona, M. B., Beznoussenko, G. V., Fusella, A., Martella, O., Moral, P., & Aa, M. (2013) · Traffic · doi:10.1111/tra.12060 · Cited by 63 · see citing works
Structure of the complete, membrane-assembled COPII coat reveals a complex interaction network
Hutchings, J., Stancheva, V. G., Brown, N. R., Cheung, A. C. M., Miller, E. A., & Zanetti, G. (2021) · Nature Communications · doi:10.1038/s41467-021-22110-6 · Cited by 64 · see citing works
The role of ubiquitination in health and disease
Liao, Y., Zhang, W., Liu, Y., Zhu, C., & Zou, Z. (2024) · MedComm · doi:10.1002/mco2.736 · Cited by 67 · see citing works
MicroRNA-based discovery of barriers to dedifferentiation of fibroblasts to pluripotent stem cells
Judson, R. L., Greve, T., Parchem, R. J., & Blelloch, R. H. (2013) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.2665 · Cited by 62 · see citing works
Ishikawa, T., Toyama, T., Nakamura, Y., Tamada, K., Shimizu, H., Ninagawa, S., Okada, T., Kamei, Y., Ishikawa‐Fujiwara, T., Todo, T., et al. (2017) · The Journal of Cell Biology · doi:10.1083/jcb.201609100 · Cited by 62 · see citing works
Control of chylomicron export from the intestine
Mansbach, C. M., & Siddiqi, S. A. (2016) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00228.2015 · Cited by 61 · see citing works
A pseudoatomic model of the COPII cage obtained from cryo-electron microscopy and mass spectrometry
Noble, A. J., Zhang, Q., O’Donnell, J., Hariri, H. H., Bhattacharya, N., Marshall, A. G., & Stagg, S. M. (2012) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.2467 · Cited by 61 · see citing works
COPII-dependent ER export in animal cells: adaptation and control for diverse cargo
McCaughey, J., & Stephens, D. J. (2018) · Histochemistry and Cell Biology · doi:10.1007/s00418-018-1689-2 · Cited by 61 · see citing works
Characterizing Ubiquitination Sites by Peptide-based Immunoaffinity Enrichment
Bustos, D. J., Bakalarski, C. E., Yang, Y., Peng, J., & Kirkpatrick, D. S. (2012) · Molecular & Cellular Proteomics · doi:10.1074/mcp.r112.019117 · Cited by 60 · see citing works
CK2 Phosphorylates Sec31 and Regulates ER-To-Golgi Trafficking
Koreishi, M., Yu, S. S. B., Oda, M., Honjo, Y., & Satoh, A. (2013) · PLoS ONE · doi:10.1371/journal.pone.0054382 · Cited by 60 · see citing works
Maeda, M., Saito, K., & Katada, T. (2016) · Molecular Biology of the Cell · doi:10.1091/mbc.e16-03-0196 · Cited by 60 · see citing works
Structural basis for dimerization quality control
Mena, E. L., Jevtić, P., Greber, B. J., Gee, C. L., Lew, B. G., Akopian, D., Nogales, E., Kuriyan, J., & Rapé, M. (2020) · Nature · doi:10.1038/s41586-020-2636-7 · Cited by 60 · see citing works
Tiwari, S., Siddiqi, S., & Siddiqi, S. A. (2013) · Journal of Biological Chemistry · doi:10.1074/jbc.m112.434258 · Cited by 57 · see citing works
CRL3s: The BTB-CUL3-RING E3 Ubiquitin Ligases
Wang, P., Song, J., & Ye, D. (2020) · Advances in experimental medicine and biology · doi:10.1007/978-981-15-1025-0_13 · Cited by 53 · see citing works
Compound heterozygous variants in NBAS as a cause of atypical osteogenesis imperfecta
Balasubramanian, M., Hurst, J. A., Brown, S., Bishop, N. J., Arundel, P., DeVile, C. J., Pollitt, R. C., Crooks, L., Longman, D., Cáceres, J. F., et al. (2016) · Bone · doi:10.1016/j.bone.2016.10.023 · Cited by 56 · see citing works
Advances in characterizing ubiquitylation sites by mass spectrometry
Sylvestersen, K. B., Young, C., & Nielsen, M. L. (2013) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2012.12.009 · Cited by 55 · see citing works
Yuan, L., Kenny, S. J., Hemmati, J., Xu, K., & Schekman, R. W. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1814810115 · Cited by 55 · see citing works
Self-citationRegulation of stem cell function by protein ubiquitylation
Strikoudis, A., Guillamot, M., & Aifantis, I. (2014) · EMBO Reports · doi:10.1002/embr.201338373 · Cited by 53 · see citing works
Ubiquitin-Dependent Regulation of Stem Cell Biology
Werner, A. A., Manford, A. G., & Rapé, M. (2017) · Trends in Cell Biology · doi:10.1016/j.tcb.2017.04.002 · Cited by 50 · see citing works
Ünlü, G., Levic, D. S., Melville, D. B., & Knapik, E. W. (2013) · The International Journal of Biochemistry & Cell Biology · doi:10.1016/j.biocel.2013.11.005 · Cited by 51 · see citing works
Kikuma, K., Li, X., Perry, S., Li, Q., Goel, P., Chen, C., Kim, D., Stavropoulos, N., & Dickman, D. K. (2019) · Nature Communications · doi:10.1038/s41467-019-10992-6 · Cited by 53 · see citing works
Biological Scaling Problems and Solutions in AmphibiansPreprint
Levy, D. L., & Heald, R. (2015) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a019166 · Cited by 52 · see citing works
- Authors
- Jin, L., Pahuja, K. B., Wickliffe, K. E., Gorur, A., Baumgärtel, C., Schekman, R., & Rape, M.
- Affiliations
- University of California, Berkeley (US)
- Howard Hughes Medical Institute (US)
- Venue
- Nature
- Published
- 2012-02
- Volume
- 482
- Issue
- 7386
- Pages
- 495-500
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- PMC
- PMC3292188
- OpenAlex
- W2050561023
- Cited by
- 330
- References
- 40
- Citations by year
- 2026: 12 · 2025: 18 · 2024: 14 · 2023: 17 · 2022: 26 · 2021: 21 · 2020: 25 · 2019: 15 · 2018: 25 · 2017: 25 · 2016: 27 · 2015: 26 · 2014: 25 · 2013: 42 · 2012: 11
- FWCI
- 15.75
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- eScholarship (California Digital Library) (submittedVersion)
- Funders
- Foundation for the National Institutes of Health
- Howard Hughes Medical Institute
- National Institutes of Health (1dp2od003088-01)
- National Institute of General Medical Sciences (R01GM083064)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular transport and secretion
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ubiquitin and proteasome pathways
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Endoplasmic Reticulum Stress and Disease
- Keywords
- COPII vesicles, monoubiquitylation, Sec31, ubiquitin ligase, chylomicron retention disease, ER-Golgi transport, protein secretion
- MeSH terms
- Animals, Cell Line, Collagen, HeLa Cells, Humans, Microfilament Proteins, Protein Transport, COP-Coated Vesicles, Ubiquitin, Vesicular Transport Proteins, Cullin Proteins, Cell Shape, Adaptor Proteins, Signal Transducing, Mice, Embryonic Stem Cells, Ubiquitination
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