The DOI matches its Crossref record; 33 of the 33 references it cites were found in a registry or an index.
mTORC1 in the Paneth cell niche couples intestinal stem-cell function to calorie intake
Open accessAbstract
How adult tissue stem and niche cells respond to the nutritional state of an organism is not well understood. Here we find that Paneth cells, a key constituent of the mammalian intestinal stem-cell (ISC) niche, augment stem-cell function in response to calorie restriction. Calorie restriction acts by reducing mechanistic target of rapamycin complex 1 (mTORC1) signalling in Paneth cells, and the ISC-enhancing effects of calorie restriction can be mimicked by rapamycin. Calorie intake regulates mTORC1 in Paneth cells, but not ISCs, and forced activation of mTORC1 in Paneth cells during calorie restriction abolishes the ISC-augmenting effects of the niche. Finally, increased expression of bone stromal antigen 1 (Bst1) in Paneth cells—an ectoenzyme that produces the paracrine factor cyclic ADP ribose—mediates the effects of calorie restriction and rapamycin on ISC function. Our findings establish that mTORC1 non-cell-autonomously regulates stem-cell self-renewal, and highlight a significant role of the mammalian intestinal niche in coupling stem-cell function to organismal physiology.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The source backs part of the claim, not all of it — or backs it for a different population, condition or comparison.
In the citing paper
“DR increases intestinal and muscle stem functions through cell-extrinsic mechanisms”
From The Hallmarks of Aging (2013) · cites this paper as Yilmaz et al., 2012
Experimental — accuracy not yet measuredThe source backs part of the claim, not all of it — or backs it for a different population, condition or comparison.
In the citing paper
“mTORC1 inhibition with rapamycin, which can postpone aging by improving proteostasis (see section on Loss of Proteostasis) and by affecting energy sensing (see section on Deregulated Nutrient-sensing), may also improve stem cell function in the epidermis, in the hematopoietic system, and in the intestine”
From The Hallmarks of Aging (2013) · cites this paper as Yilmaz et al., 2012
Experimental — accuracy not yet measuredThe cited source says what the claim attributes to it.
In the citing paper
“Rapamycin also increases the self-renewal capacity of mouse intestinal stem cells, via a non-cell autonomous mechanism mediated by inhibition of mTORC1 in the adjacent Paneth cells 96.”
From Targeting the biology of aging with mTOR inhibitors (2023) · cites this paper as [96]
In the citing paper
“mTOR, a potent activator of protein translation and inhibitor of autophagy, has been shown to regulate the self-renewal and differentiation of HSCs and intestinal stem cells79,80.”
From Stem cell aging: mechanisms, regulators and therapeutic opportunities (2014) · cites this paper as [79]
In the citing paper
“CR can also enhance or maintain stem cell function during aging by increasing the expression of brain-derived neurotrophic factor in the brain and reducing the mTOR complex 1 (mTORC1) pathway in intestine79,112.”
From Stem cell aging: mechanisms, regulators and therapeutic opportunities (2014) · cites this paper as [79]
In the citing paper
“CR can also enhance or maintain stem cell function during aging by increasing the expression of brain-derived neurotrophic factor in the brain and reducing the mTOR complex 1 (mTORC1) pathway in intestine79,112.”
From Stem cell aging: mechanisms, regulators and therapeutic opportunities (2014) · cites this paper as [79]
In the citing paper
“Paneth cells, found in close association with intestinal stem cells in humans and mice, are an important source of niche factors, including epidermal growth factor, Wnt3A and Notch ligand79,156, although the effect of aging on their activity is yet to be elucidated.”
From Stem cell aging: mechanisms, regulators and therapeutic opportunities (2014) · cites this paper as [79]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche
Sato, T., Vries, R. G., Snippert, H. J., van de Wetering, M., Barker, N., Stange, D. E., van Es, J. H., Abo, A., Kujala, P., Peters, P. J., et al. (2009) · Nature · doi:10.1038/nature07935 · Cited by 7,204
Identification of stem cells in small intestine and colon by marker gene Lgr5
Barker, N., van Es, J. H., Kuipers, J., Kujala, P., van den Born, M., Cozijnsen, M., Haegebarth, A., Korving, J., Begthel, H., Peters, P. J., et al. (2007) · Nature · doi:10.1038/nature06196 · Cited by 5,687
Paneth cells constitute the niche for Lgr5 stem cells in intestinal crypts
Sato, T., van Es, J. H., Snippert, H. J., Stange, D. E., Vries, R. G., van den Born, M., Barker, N., Shroyer, N. F., van de Wetering, M., & Clevers, H. (2011) · Nature · doi:10.1038/nature09637 · Cited by 2,510
Prolonged Rapamycin Treatment Inhibits mTORC2 Assembly and Akt/PKB
Sarbassov, D. D., Ali, S. M., Sengupta, S., Sheen, J.-H., Hsu, P. P., Bagley, A. F., Markhard, A. L., & Sabatini, D. M. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.03.029 · Cited by 2,365
Self-citationSnippert, H. J., van der Flier, L. G., Sato, T., van Es, J. H., van den Born, M., Kroon-Veenboer, C., Barker, N., Klein, A. M., van Rheenen, J., Simons, B. D., et al. (2010) · Cell · doi:10.1016/j.cell.2010.09.016 · Cited by 1,951
Bmi1 is expressed in vivo in intestinal stem cells
Sangiorgi, E., & Capecchi, M. R. (2008) · Nature Genetics · doi:10.1038/ng.165 · Cited by 1,245
Pten dependence distinguishes haematopoietic stem cells from leukaemia-initiating cells
Yilmaz, Ö. H., Valdez, R., Theisen, B. K., Guo, W., Ferguson, D. O., Wu, H., & Morrison, S. J. (2006) · Nature · doi:10.1038/nature04703 · Cited by 1,113
Self-citationTranscription Factor Achaete Scute-Like 2 Controls Intestinal Stem Cell Fate
van der Flier, L. G., van Gijn, M. E., Hatzis, P., Kujala, P., Haegebarth, A., Stange, D. E., Begthel, H., van den Born, M., Guryev, V., Oving, I. M., et al. (2009) · Cell · doi:10.1016/j.cell.2009.01.031 · Cited by 752
Interconversion Between Intestinal Stem Cell Populations in Distinct Niches
Takeda, N., Jain, R., LeBoeuf, M. R., Wang, Q., Lu, M. M., & Epstein, J. A. (2011) · Science · doi:10.1126/science.1213214 · Cited by 742
Prominin 1 marks intestinal stem cells that are susceptible to neoplastic transformation
Zhu, L., Gibson, P., Currle, D. S., Tong, Y., Richardson, R. J., Bayazitov, I. T., Poppleton, H., Zakharenko, S. S., Ellison, D. W., & Gilbertson, R. J. (2008) · Nature · doi:10.1038/nature07589 · Cited by 690
Cited by
Sorted by citations
Items 701–751 of 751
From geroprotective tactics to anti-ageing strategy: ways to eliminate ageing per se
Baramiya, M. G., & Mykhalskiy, S. (2023) · Ageing & Longevity · doi:10.47855/jal9020-2023-2-2
SARIKAYA, H., Önder, E., Çil, N., Mete, E., & Mete, G. A. (2023) · Pamukkale Medical Journal · doi:10.31362/patd.1337120
Isotani, R., Igarashi, M., Miura, M., Naruse, K., Kuranami, S., & Yamauchi, T. (2024) · eLife · doi:10.7554/elife.95267.1
Metastasis of colon cancer requires Dickkopf-2 to generate cancer cells with Paneth cell properties
Shin, J. H., Park, J., Lim, J., Jeong, J., Dinesh, R. K., Maher, S. E., Kim, J., Park, S. Y., Hong, J. Y., Wysolmerski, J. J., et al. (2024) · eLife · doi:10.7554/elife.97279.3
Metastasis of colon cancer requires Dickkopf-2 to generate cancer cells with Paneth cell propertiesPreprint
Shin, J. H., Park, J., Lim, J., Jeong, J., Dinesh, R. K., Maher, S. E., Hong, J. Y., Wysolmerski, J. J., Choi, J., & Bothwell, A. L. M. (2024) · eLife · doi:10.7554/elife.97279.1
Agarwal, P., Verma, S. S., & Singh, A. K. (2024) · Advances in biogerontology · doi:10.1016/bs.abger.2024.05.006
Gnoni, M. L. (2024) · Norton Healthcare Medical Journal · doi:10.59541/001c.121441 · Cited by 1
Kurup, K., Chan, M. D., Moore, E., Ranjo‐Bishop, M., Pham, K. D., Stanford, D. R., Freeman, W. M., & Unnikrishnan, A. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.10.01.616110
Isotani, R., Igarashi, M., Miura, M., Naruse, K., Kuranami, S., Katoh, M., Nomura, S., & Yamauchi, T. (2024) · eLife · doi:10.7554/elife.95267.2
Short Term Soft Pellet Diet Changes Intestinal Characteristics in Mice
Miyakawa, K., Huang, J., Tanaka, T., & Sakata, I. (2025) · Journal of Animal Physiology and Animal Nutrition · doi:10.1111/jpn.14117
Sankova, M. V., Nikolenko, V. N., Bolotskaya, A. A., Oganesyan, M. V., Rizaeva, N. A., Sankov, A. V., Zharikova, T. S., Pontes‐Silva, A., Beeraka, N. M., R, H. V. P., et al. (2025) · Current Medicinal Chemistry · doi:10.2174/0109298673357073250526104619
Kumar, A. A., Iqbal, S., Nestaite, E., Pentinmikko, N., Broberg, M. E., Morikka, J., Hietakangas, V., & Katajisto, P. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.08.28.672976
Self-citationAkkaya-Colak, K. B., Keller, A. R., Festing, M. H., Gupta, K., Sledziona, J., Adeniyi, A., West, O., Stevens, P., Pietrzak, M., Knoblaugh, S. E., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.09.17.676943
Regulation of intestinal injury via dietary cysteine
Siracusa, F., & Gagliani, N. (2025) · Trends in Immunology · doi:10.1016/j.it.2025.11.003
Casanova-Maldonado, I., Arancibia, D., Lois, P., Peña‐Villalobos, I., & Palma, V. (2024) · Figshare · doi:10.6084/m9.figshare.26603869
Casanova-Maldonado, I., Arancibia, D., Lois, P., Peña‐Villalobos, I., & Palma, V. (2024) · Figshare · doi:10.6084/m9.figshare.26603866
Maternal Organ Growth: How the Adult Intestine Remodels During Pregnancy and Lactation
Ameku, T. (2025) · Development Growth & Differentiation · doi:10.1111/dgd.70037
la Torre‐Baez, R. D., Vizcarra-Soto, M., Valdez-Palomares, F., Diaz-González, D. M., Hernandez-Gonzalez, A., Silva-Olivares, A., Betanzos, A., Encarnacion‐Garcia, M. R., Escobar, M. L., Torres‐Ramírez, N., et al. (2026) · American Journal Of Pathology · doi:10.1016/j.ajpath.2025.12.011
Nuclear Factor Y controls epithelial growth by regulating mTOR in the Drosophila midgutPreprint
Strutynska, T. R., Deniz, O., & Mattila, J. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.01.30.702747
Zhang, Z., Liu, J., & Liu, Q.-J. (2026) · International Journal of Radiation Biology · doi:10.1080/09553002.2026.2630995
Hechter, D., Kisselev, I., McNicol, I., & Good, S. V. (2026) · Genes & Nutrition · doi:10.1186/s12263-026-00798-9
Lahiri, G., Millan, Y. B., Sankar, S., Mullen, K. F., McDermott, T. H., Saiz, D. R., Farnsworth, F., Torel, M., Blatt, M., Roginski, A. C., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.03.15.711939
O-GlcNAcylation regulates PPAR-driven metabolic programming in intestinal stem cellsPreprint
McDermott, T. H., Saiz, D. R., Millan, Y. B., Ho, N. A., Torel, M., Uher, E., Aboagye, C. I., Farnsworth, F., Lahiri, G., Thiriveedi, V., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.03.13.711696
Rôles de SOX9 dans l’auto-renouvellement et la différenciation de l’épithélium intestinal
Soualhi, S. (2014) · theses.fr (ABES) · doi:10.70675/e3d7e0c0z8f92z49e6z8bddz19969fbc94f0
Metabolic characterisation of skeletal muscle stem cells in distinct physiological states
Pala, F. (2017) · theses.fr (ABES) · doi:10.70675/ba751aadz6065z4221zbe6ez3b3e7cb993cc
Impact of microbiota on intestinal stem cells survival after irradiation
Lévy, A. (2018) · theses.fr (ABES) · doi:10.70675/b6ab24a4zf5fdz489ezb1b1za2f33c2c0847
Rôles de l’autophagie dans l'homéostasie des cellules souches intestinales
Trentesaux, C. (2018) · theses.fr (ABES) · doi:10.70675/6bad110bz19b1z4cd6z81d0z74d0fb1e27f3
La signalisation insuline comme garant de la fonction barrière intestinale
Gueddouri, D. (2021) · theses.fr (ABES) · doi:10.70675/8371f5a7zb0c3z4f82z83e9z236d0eedb3f1
How Somatic Mutations cause Aging without Causing AgingPreprint
Wolf, A. M. (2026) · SSRN Electronic Journal · doi:10.2139/ssrn.6431458
Hammoudi, N. (2021) · theses.fr (ABES) · doi:10.70675/4595a58dzcce7z43f2zbd07z10eb7653d7c5
Lu, M.-F., Qi, X.-Y., Cheng, J.-W., Wang, M., Liu, S.-Y., Zhang, Y., Jiang, X.-J., Yang, Y., Su, Q. Y., He, P. F., et al. (2026) · Autoimmunity Reviews · doi:10.1016/j.autrev.2026.104071
Iba, T., Wakabayashi, T., Ito, R., Sugawara, A., Fujimura, S., Sawane, M., Yoshioka, K., Matsui, A., Morishige, J., Nagata, N., et al. (2026) · Stem Cell Reports · doi:10.1016/j.stemcr.2026.102931
Caloric restriction rejuvenates aged adult stem cells: From mechanisms to interventions
Chai, Y., Liu, X., Bi, J., Zeng, J., Yao, M., Shi, F., & Xu, S. (2026) · Ageing Research Reviews · doi:10.1016/j.arr.2026.103204
From mice to humans—divergent strategies for intestinal homeostasis and regeneration
Ishikawa, K., Sugimoto, S., & Sato, T. (2026) · FEBS Letters · doi:10.1002/1873-3468.70387 · Cited by 2
Sullivan, J., Conway, J., Hopkin, S. J., Chimen, M., & Duggal, N. A. (2026) · Aging Cell · doi:10.1111/acel.70605
Rag GTPases and mTORC1 regulate intestinal stem cell activity in response to nutrient availability
Fan, W., Ge, C., Niu, C., Liu, S., Wang, P., Li, H., Yang, C., Lu, Y., & Wei, Y. (2026) · The Journal of Cell Biology · doi:10.1083/jcb.202510172
Golgi organization regulates stem cell function in the small intestine
Belevich, I. N., Porcile, L., Sola-Carvajal, A., Grommisch, D., Annusver, K., Heinz, P., Das, S., Webb, A., Andersson, S., Pentinmikko, N., et al. (2026) · Nature Communications · doi:10.1038/s41467-026-75679-1 · Cited by 4
Self-citationNutrient-sensing pathways in adult stem cells: Orchestrating homeostasis, aging, and disease
Xiao, T., Xie, Z., Yao, L., Zhao, K., Zeng, Y. A., & Hu, C. (2026) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2026.103690
Akkaya-Colak, K. B., Keller, A. R., Festing, M. H., Gupta, K., Sledziona, J., Adeniyi, A., West, O., Stevens, P., Pietrzak, M., Knoblaugh, S. E., et al. (2026) · Cell Reports · doi:10.1016/j.celrep.2026.117731
Wang, R., Tabrizian, T., Wang, D., English, J., Ayer, A., Gal, M., Yang, W., Wu, Z., Mao, K., Novaj, A., et al. (2026) · Nature Aging · doi:10.1038/s43587-026-01170-7
Akbaş, E., Gürgen, B. N., Akgül, E., Günay, E., Tok, B., Ozduran, E., Yalçın, S. E., Çağatay, S. C., Aksoy, Z. B., Aǧagündüz, D., et al. (2026) · Biomedicines · doi:10.3390/biomedicines14081873
Intestinal stem cells in radiation-induced intestinal injury: mechanisms and therapeutic targets
Zhang, H., Zhang, Z., Liu, J., & Liu, Q.-J. (2026) · International Journal of Radiation Biology · doi:10.1080/09553002.2026.2723067
Intestinal Epithelial Memory: From Inflammatory Imprinting to Metabolite‐Shaped Immune Tolerance
Yang, W., Yu, T., & Cong, Y. (2026) · Barrier Immunity · doi:10.1002/dni2.70017
Dagah, O. M. A., Ullah, Z., Alhameed, A. M. M., Al-Azzani, H., Manzoor, R., Khamis, M. Y., Liu, Z., & Lu, J. (2026) · Molecular Immunology · doi:10.1016/j.molimm.2026.09.009
Barash, I. (2026) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2026.1982804
Metadata
- Authors
- Yilmaz, Ö. H., Katajisto, P., Lamming, D. W., Gültekin, Y., Bauer-Rowe, K. E., Sengupta, S., Birsoy, K., Dursun, A., Yilmaz, V. O., Selig, M., Nielsen, G. P., Mino-Kenudson, M., Zukerberg, L. R., Bhan, A. K., Deshpande, V., & Sabatini, D. M.
- Affiliations
- Harvard University (US)
- Broad Institute (US)
- Corresponding author
- Sabatini, David M.
- ORCID
- Venue
- Nature
- Published
- 2012-05-20
- Volume
- 486
- Issue
- 7404
- Pages
- 490-495
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- PMC
- PMC3387287
- OpenAlex
- W2113486346
- Cited by
- 753
- References
- 33
- Citations by year
- 2026: 38 · 2025: 45 · 2024: 44 · 2023: 58 · 2022: 53 · 2021: 75 · 2020: 69 · 2019: 54 · 2018: 63 · 2017: 56 · 2016: 39 · 2015: 39 · 2014: 52 · 2013: 47 · 2012: 19
- FWCI
- 20.17
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Digital Access to Scholarship at Harvard (DASH) (Harvard University) (submittedVersion, cc-by)
- RePEc: Research Papers in Economics (submittedVersion)
- DSpace@MIT (Massachusetts Institute of Technology) (submittedVersion, cc-by-nc)
- Funders
- Howard Hughes Medical Institute
- National Institute on Aging (F32AG032833)
- National Cancer Institute (T32CA09216, CA129105, CA103866, R01CA103866, R01CA129105, T32CA009216)
- National Institute of Diabetes and Digestive and Kidney Diseases (P30DK043351)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › PI3K/AKT/mTOR signaling in cancer
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Aging › Genetics, Aging, and Longevity in Model Organisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Metabolism, Diabetes, and Cancer
- Keywords
- mTORC1, Paneth cells, intestinal stem cells, intestinal stem cell niche, caloric restriction, BST1, cyclic ADP-ribose, paracrine signaling, stem cell self-renewal, intestinal regeneration, nutritional status, rapamycin, lifespan
- MeSH terms
- Mechanistic Target of Rapamycin Complex 1, Animals, Energy Intake, Cell Count, Cell Division, Female, Intestines, Longevity, Male, Proteins, Regeneration, Stem Cells, Signal Transduction, Antigens, CD, Paneth Cells, Paracrine Communication, Sirolimus, Caloric Restriction, ADP-ribosyl Cyclase, Cyclic ADP-Ribose, Multiprotein Complexes, Mice, Stem Cell Niche, TOR Serine-Threonine Kinases, GPI-Linked Proteins
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review