The microbiome and innate immunity

An obesity-associated gut microbiome with increased capacity for energy harvest

Turnbaugh, P. J., Ley, R. E., Mahowald, M. A., Magrini, V., Mardis, E. R., & Gordon, J. I. (2006) · Nature · doi:10.1038/nature05414 · Cited by 12,444

Diversity of the Human Intestinal Microbial Flora

Eckburg, P. B., Bik, E. M., Bernstein, C. N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S. R., Nelson, K. E., & Relman, D. A. (2005) · Science · doi:10.1126/science.1110591 · Cited by 7,913

Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease

Wang, Z., Klipfell, E., Bennett, B. J., Koeth, R., Levison, B. S., DuGar, B., Feldstein, A. E., Britt, E. B., Fu, X., Chung, Y.-M., et al. (2011) · Nature · doi:10.1038/nature09922 · Cited by 5,597

Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease

Hugot, J.-P., Chamaillard, M., Zouali, H., Lesage, S., Cézard, J.-P., Belaiche, J., Almer, S., Tysk, C., O'Morain, C. A., Gassull, M., et al. (2001) · Nature · doi:10.1038/35079107 · Cited by 5,591

A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease

Ogura, Y., Bonen, D. K., Inohara, N., Nicolae, D. L., Chen, F. F., Ramos, R., Britton, H., Moran, T., Karaliuskas, R., Duerr, R. H., et al. (2001) · Nature · doi:10.1038/35079114 · Cited by 5,030

Richness of human gut microbiome correlates with metabolic markers

Le Chatelier, E., Nielsen, T., Qin, J., Prifti, E., Hildebrand, F., Falony, G., Almeida, M., Arumugam, M., Batto, J.-M., Kennedy, S., et al. (2013) · Nature · doi:10.1038/nature12506 · Cited by 4,662

Intestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis

Koeth, R. A., Wang, Z., Levison, B. S., Buffa, J. A., Org, E., Sheehy, B. T., Britt, E. B., Fu, X., Wu, Y., Li, L., et al. (2013) · Nature Medicine · doi:10.1038/nm.3145 · Cited by 4,386

Recognition of Commensal Microflora by Toll-Like Receptors Is Required for Intestinal Homeostasis

Rakoff-Nahoum, S., Paglino, J., Eslami-Varzaneh, F., Edberg, S., & Medzhitov, R. (2004) · Cell · doi:10.1016/j.cell.2004.07.002 · Cited by 4,251

Commensal Bifidobacterium promotes antitumor immunity and facilitates anti–PD-L1 efficacy

Sivan, A., Corrales, L., Hubert, N., Williams, J. B., Aquino-Michaels, K., Earley, Z. M., Benyamin, F. W., Man Lei, Y., Jabri, B., Alegre, M.-L., et al. (2015) · Science · doi:10.1126/science.aac4255 · Cited by 3,888

Type 2 diabetes as an inflammatory disease

Donath, M. Y., & Shoelson, S. E. (2011) · Nature Reviews Immunology · doi:10.1038/nri2925 · Cited by 3,737

Arguments for routine administration of probiotics for NEC prevention

Underwood, M. A. (2019) · Current Opinion in Pediatrics · doi:10.1097/mop.0000000000000732 · Cited by 20

How diet and the microbiome shape health or contribute to disease: A mini-review of current models and clinical studies

Zangara, M. T., & McDonald, C. (2019) · Experimental Biology and Medicine · doi:10.1177/1535370219826070 · Cited by 20

Variations in association of nasal microbiota with virulent and non-virulent strains of Glaesserella (Haemophilus) parasuis in weaning piglets

Mahmmod, Y. S., Correa‐Fiz, F., & Aragón, V. (2020) · Veterinary Research · doi:10.1186/s13567-020-0738-8 · Cited by 20

Intestinal microbiology shapes population health impacts of diet and lifestyle risk exposures in Torres Strait Islander communities

Mobegi, F. M., Leong, L. E. X., Thompson, F., Taylor, S., Harriss, L. R., Choo, J. M., Taylor, S., Wesselingh, S. L., McDermott, R. A., Ivey, K. L., et al. (2020) · eLife · doi:10.7554/elife.58407 · Cited by 22

Social environment and genetics underlie body site‐specific microbiomes of Yellowstone National Park gray wolves ( Canis lupus )

DeCandia, A. L., Cassidy, K. A., Stahler, D. R., Stahler, E. E., & vonHoldt, B. M. (2021) · Ecology and Evolution · doi:10.1002/ece3.7767 · Cited by 23

Drivers of change and stability in the gut microbiota of an omnivorous avian migrant exposed to artificial food supplementation

Pekarsky, S., Corl, A. B., Turjeman, S., Kamath, P. L., Getz, W. M., Bowie, R. C. K., Markin, Y. M., & Nathan, R. (2021) · Molecular Ecology · doi:10.1111/mec.16079 · Cited by 20

Hidradenitis suppurativa: A folliculotropic disease of innate immune barrier dysfunction?

Johnston, D. G. W., Kirby, B., & Tobin, D. J. (2021) · Experimental Dermatology · doi:10.1111/exd.14451 · Cited by 20

Citrobacter amalonaticus Inhibits the Growth of Citrobacter rodentium in the Gut Lumen

Mullineaux-Sanders, C., Carson, D., Hopkins, E. G. D., Glegola-Madejska, I., Escobar‐Zepeda, A., Browne, H. P., Lawley, T. D., & Frankel, G. M. (2021) · mBio · doi:10.1128/mbio.02410-21 · Cited by 20

The gut microbiome and adult hippocampal neurogenesis: A new focal point for epilepsy?

Dohm-Hansen, S., Donoso, F., Lucassen, P. J., Clarke, G. A., & Nolan, Y. M. (2022) · Neurobiology of Disease · doi:10.1016/j.nbd.2022.105746 · Cited by 21

Dietary Polyphenols Alleviate Autoimmune Liver Disease by Mediating the Intestinal Microenvironment: Challenges and Hopes

Cheng, Z., Wang, Y., & Li, B. (2022) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.2c02654 · Cited by 20

Impact of Prebiotics, Probiotics and Gut Derived Metabolites on Host Immunity

Wu, R., Jeffrey, M. P., Johnson‐Henry, K. C., Green-Johnson, J. M., & Sherman, P. M. (2016) · LymphoSign Journal · doi:10.14785/lymphosign-2016-0012 · Cited by 22

Developments in the field of intestinal toxicity and signaling pathways associated with rodent exposure to micro(nano)plastics

Du, L., Liu, H., Song, X., Feng, X., Xu, H., Tang, W., & Yang, J. (2024) · Toxicology · doi:10.1016/j.tox.2024.153883 · Cited by 19

Physiologic colonic fluorine-18-fluorodeoxyglucose uptake may predict response to immunotherapy in patients with metastatic melanoma

Boursi, B., Werner, T. J., Gholami, S., Margalit, O., Baruch, E. N., Markel, G., Eshet, Y., Houshmand, S., Shacham‐Shmueli, E., Mitchell, T. C., et al. (2018) · Melanoma Research · doi:10.1097/cmr.0000000000000566 · Cited by 19

Infective endocarditis triangle.. Is it the time to revisit infective endocarditis susceptibility and indications for its antibiotic prophylaxis?

Calcaterra, G., Crisafulli, A., Guccione, P., Salvo, G. D., & Bassareo, P. P. (2019) · European Journal of Preventive Cardiology · doi:10.1177/2047487319856126 · Cited by 19

Traditional Probiotics, Next-Generation Probiotics and Engineered Live Biotherapeutic Products in Chronic Wound Healing

Kaistha, S. D., & Deshpande, N. M. (2021) · Springer eBooks · doi:10.1007/978-981-16-2677-7_8 · Cited by 19

NLRC3 deficiency promotes cutaneous wound healing due to the inhibition of p53 signaling

Yuan, Q., Wu, K., Zhang, Z., Pan, R., Lin, Z., Zhang, W., Huang, S., Dai, J., Huang, R., Gong, S., et al. (2022) · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · doi:10.1016/j.bbadis.2022.166518 · Cited by 19

Multi-omics analysis reveals the metabolic regulators of duodenal low-grade inflammation in a functional dyspepsia model

Ji, S., You, Y., Peng, B., Zhong, T., Kuang, Y., Li, S., Du, L., Chen, L., Sun, X., Dai, J., et al. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.944591 · Cited by 19

Characterization of Non-Obstructive Azoospermia in Men Using Gut Microbial Profiling

Cao, Y., Wang, H., Jin, Z., Hang, J., Jiang, H., Wu, H., & Zhang, Z. (2023) · Journal of Clinical Medicine · doi:10.3390/jcm12020701 · Cited by 19

Interleukin‐1 family cytokines at the crossroads of microbiome regulation in barrier health and disease

Narros‐Fernández, P., Basavarajappa, S. C., & Walsh, P. T. (2023) · FEBS Journal · doi:10.1111/febs.16888 · Cited by 19

The role of extratumoral and intratumoral microorganisms in cancer immunotherapy

Du, Y., Liu, L., Ma, W., Yan, W., Mao, W., Du, Y., Cui, K., Pu, Y., Li, Z., Sansonetti, P. J., et al. (2023) · The Innovation Life · doi:10.59717/j.xinn-life.2023.100016 · Cited by 20

Human Neutrophil Response to Pseudomonas Bacteriophage PAK_P1, a Therapeutic Candidate

Roach, D. R., Noël, B., Chollet‐Martin, S., de Jode, M., Granger, V., Debarbieux, L., & de Chaisemartin, L. (2023) · Viruses · doi:10.3390/v15081726 · Cited by 19

Unraveling the intricate relationship: Influence of microbiome on the host immune system in carcinogenesis

Garg, S., Sharma, N., Bharmjeet, & Das, A. (2023) · Cancer Reports · doi:10.1002/cnr2.1892 · Cited by 20

Protective and therapeutic potential of melatonin against intestinal diseases: updated review of current data based on molecular mechanisms

Mehrzadi, S., Sheibani, M., Koosha, F., Alinaghian, N., Pourhanifeh, M. H., Tabaeian, S. P., Reiter, R. J., & Hosseinzadeh, A. (2023) · Expert Review of Gastroenterology & Hepatology · doi:10.1080/17474124.2023.2267439 · Cited by 19

Intestinal Microbiota and Its Effect on Vaccine-Induced Immune Amplification and Tolerance

Liu, Y., Zhou, J., Yang, Y., Chen, X., Chen, L., & Wu, Y. (2024) · Vaccines · doi:10.3390/vaccines12080868 · Cited by 19

Metagenomic characterization of oral microbiome signatures to predict upper gastrointestinal and pancreaticobiliary cancers: a case–control study

Oh, S., Kim, J., Shin, C. M., Lee, H., Lee, H. S., & Park, K. U. (2025) · Journal of Translational Medicine · doi:10.1186/s12967-024-05989-9 · Cited by 19

Faecalibacillus intestinalis gen. nov., sp. nov. and Faecalibacillus faecis sp. nov., isolated from human faeces

Seo, B., Jeon, K., Baek, I., Lee, Y. M., Baek, K., & Ko, G. (2019) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijsem.0.003443 · Cited by 19

Analysis of the Stomal Microbiota of a Percutaneous Osseointegrated Prosthesis: A Longitudinal Prospective Cohort Study

Beck, J. P., Grogan, M. D., Bennett, B. T., Jeyapalina, S., Agarwal, J. P., Bartow‐McKenney, C., Bugayev, J., Kubiak, E. N., Sinclair, S. K., & Grice, E. A. (2019) · Journal of Orthopaedic Research® · doi:10.1002/jor.24421 · Cited by 19

Differences in Intestinal Metabolism of Ginseng Between Normal and Immunosuppressed Rats

Zhu, J., Xu, J., Zhou, S.-S., Zhang, X., Zhou, J., Kong, M., Mao, Q., Zhu, H., & Li, S. (2020) · European Journal of Drug Metabolism and Pharmacokinetics · doi:10.1007/s13318-020-00645-1 · Cited by 19

Global climate change, diet, and the complex relationship between human host and microbiome: Towards an integrated picture

Catania, F., Baedke, J., Fábregas‐Tejeda, A., Delgado, A. N., Vitali, V., & Long, L. A. N. (2021) · BioEssays · doi:10.1002/bies.202100049 · Cited by 19

Commensal oral microbiota induces osteoimmunomodulatory effects separate from systemic microbiome in mice

Hathaway‐Schrader, J. D., Aartun, J. D., Poulides, N. A., Kuhn, M. B., McCormick, B. E., Chew, M. E., Huang, E., Darveau, R. P., Westwater, C., & Novince, C. M. (2022) · JCI Insight · doi:10.1172/jci.insight.140738 · Cited by 19

Pseudorabies Virus Tegument Protein UL13 Suppresses RLR-Mediated Antiviral Innate Immunity through Regulating Receptor Transcription

Zhao, N., Wang, F., Kong, Z., & Shang, Y. (2022) · Viruses · doi:10.3390/v14071465 · Cited by 19

Comparative analysis of midgut bacterial community under Vibrio splendidus infection in Apostichopus japonicus with hindgut as a reference

Zhang, Z., Lv, Z., Zhang, W., Shao, Y., Zhao, X., Guo, M. Z., & Li, C. (2019) · Aquaculture · doi:10.1016/j.aquaculture.2019.734427 · Cited by 19

Ecological immunology

Schmid‐Hempel, P. (2021) · Oxford University Press eBooks · doi:10.1093/oso/9780198832140.003.0005 · Cited by 19

Dysregulation of gut microbiota and chronic inflammatory disease: from epithelial defense to host immunity

Koh, J. H., & Kim, W. (2017) · Experimental & Molecular Medicine · doi:10.1038/emm.2017.55 · Cited by 19

The Role of Retinoic-Acid-Related Orphan Receptor (RORs) in Cellular Homeostasis

Nematisouldaragh, D., Kirshenbaum, E., Uzonna, M., Kirshenbaum, L. A., & Rabinovich-Nikitin, I. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms252111340 · Cited by 21

Restoring mucosal barrier homeostasis by in situ formation of a living-synthetic therapeutic coating

Yu, W., Luo, H., Han, B. R., Lin, S., Li, Q., Xue, R., Tang, H., Jia, X., Wang, L., & Liu, J. (2025) · Nature Communications · doi:10.1038/s41467-025-63110-0 · Cited by 18

Allelic variation in a single genomic region alters the hemolymph proteome in the snail Biomphalaria glabrata

Allan, E. R. O., Yang, L., Tennessen, J. A., & Blouin, M. S. (2019) · Fish & Shellfish Immunology · doi:10.1016/j.fsi.2019.02.065 · Cited by 18

Early Life Disruption of the Microbiota Affects Organ Development and Cytokine Gene Expression in Threespine Stickleback

Kirschman, L. J., Khadjinova, A., Ireland, K., & Milligan‐McClellan, K. (2020) · Integrative and Comparative Biology · doi:10.1093/icb/icaa136 · Cited by 18

NOD1-Targeted Immunonutrition Approaches: On the Way from Disease to Health

Fernández-García, V., González-Ramos, S., Martín‐Sanz, P., Laparra, J. M., & Boscá, L. (2021) · Biomedicines · doi:10.3390/biomedicines9050519 · Cited by 18

Genome-Inferred Correspondence between Phylogeny and Metabolic Traits in the Wild Drosophila Gut Microbiome

McMullen, J. G., Bueno, E., Blow, F., & Douglas, A. E. (2021) · Genome Biology and Evolution · doi:10.1093/gbe/evab127 · Cited by 18

Differential effects of elevated nest temperature and parasitism on the gut microbiota of wild avian hosts

Ingala, M. R., Albert, L., Addesso, A. M., Watkins, M. J., & Knutie, S. A. (2021) · Animal Microbiome · doi:10.1186/s42523-021-00130-3 · Cited by 18

Coronavirus Disease 2019 (COVID-19) Crisis: Losing Our Immunity When We Need It the Most

Ghanemi, A., Yoshioka, M., & St‐Amand, J. (2021) · Biology · doi:10.3390/biology10060545 · Cited by 18

Changes in the gut microbiome and colic in horses, are they cause or consequence?

Lara, F., Castro, R., & Pamela Thomson, M. (2022) · Open Veterinary Journal · doi:10.5455/ovj.2022.v12.i2.12 · Cited by 18

Microbiota and Extracellular Vesicles in Anti-PD-1/PD-L1 Therapy

Mishra, S., Amatya, S. B., Salmi, S., Koivukangas, V., Karihtala, P., & Reunanen, J. (2022) · Cancers · doi:10.3390/cancers14205121 · Cited by 18

Altered gut microbiota community structure and correlated immune system changes in dibutyl phthalate exposed mice

Almamoun, R., Pierozan, P., Manoharan, L., & Karlsson, O. (2023) · Ecotoxicology and Environmental Safety · doi:10.1016/j.ecoenv.2023.115321 · Cited by 19

Alterations of the gut microbiota in the lupus nephritis: a systematic review

Wang, A., Zhao, J., Qin, Y., Zhang, Y., Xing, Y., Wang, Y., Yu, Z., Yan, J., Han, M., Yuan, J., et al. (2023) · Renal Failure · doi:10.1080/0886022x.2023.2285877 · Cited by 18

Emerging Concepts in Innate Immunity

Pelka, K., & Nardo, D. D. (2017) · Methods in molecular biology · doi:10.1007/978-1-4939-7519-8_1 · Cited by 19

Molecular Interactions between Pathogens and the Circadian Clock

Barik, S. (2019) · International Journal of Molecular Sciences · doi:10.3390/ijms20235824 · Cited by 18

Influence of Macrophyte and Gut Microbiota on Mercury Contamination in Fish: A Microcosms Study

Gentès, S., Monperrus, M., Legeay, A., Gassie, C., Maury‐Brachet, R., André, J., & Guyoneaud, R. (2020) · Applied Sciences · doi:10.3390/app10041500 · Cited by 18

Guidelines for absolute quantitative real‐time PCR for microbial determination in in vitro gastrointestinal digestion

Lu, Z., Shi, M., Tian, M., Wang, X., Ji, J., Liao, X., Hu, X., & Chen, F. (2020) · Food Frontiers · doi:10.1002/fft2.31 · Cited by 18

Effects of Combinations of Goat Milk and Oligosaccharides on Altering the Microbiota, Immune Responses, and Short Chain Fatty Acid Levels in the Small Intestines of Mice

Ma, H., Zhao, Y., Li, L., & Liu, Y. (2021) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.1c03408 · Cited by 18

Impact of the gut microbiota on the immune system

Kogut, M. H. (2022) · Elsevier eBooks · doi:10.1016/b978-0-12-818708-1.00017-8 · Cited by 19

Skin Microbiota Was Altered in Crocodile Lizards (Shinisaurus crocodilurus) With Skin Ulcer

Jiang, H., Luo, S., Zhou, J., Huang, W., Li, L., Zhang, X., He, J., & Chen, J. (2022) · Frontiers in Veterinary Science · doi:10.3389/fvets.2022.817490 · Cited by 18

Diet, Microbes, and Cancer Across the Tree of Life: a Systematic Review

Kapsetaki, S. E., Alcaraz, G. M., Maley, C. C., Whisner, C. M., & Aktipis, A. (2022) · Current Nutrition Reports · doi:10.1007/s13668-022-00420-5 · Cited by 19

COVID-19 severity is associated with population-level gut microbiome variations

Lymberopoulos, E., Gentili, G. I., Budhdeo, S., & Sharma, N. (2022) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2022.963338 · Cited by 18

The First Evidence of Bacterial Foci in the Hair Part and Dermal Papilla of Scalp Hair Follicles: A Pilot Comparative Study in Alopecia Areata

Rinaldi, F., Pinto, D., Borsani, E., Castrezzati, S., Amedei, A., & Rezzani, R. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms231911956 · Cited by 19

Tissue macrophages as mediators of a healthy relationship with gut commensal microbiota

Nakagaki, B. N., Vieira, A. T., Rezende, R. M., David, B. A., & Menezes, G. B. (2018) · Cellular Immunology · doi:10.1016/j.cellimm.2018.01.017 · Cited by 18

Using MinION ™ to characterize dog skin microbiota through full-length 16S rRNA gene sequencing approachPreprint

Cuscó, A., Viñes, J., D’Andreano, S., Riva, F. T., Casellas, J., Sánchez, A., & Francino, O. (2017) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/167015 · Cited by 19

MicrobeRX: a tool for enzymatic-reaction-based metabolite prediction in the gut microbiome

Ruiz-Moreno, A. J., del Castillo-Izquierdo, Á., Tamargo-Rubio, I., & Fu, J. (2025) · Microbiome · doi:10.1186/s40168-025-02070-5 · Cited by 17

Critical Care Nutrition from a Metabolic Point of View: A Narrative Review

Oami, T., Yamamoto, A., Ishida, S., Kondo, K., Hata, N., & Oshima, T. (2025) · Nutrients · doi:10.3390/nu17081352 · Cited by 18

A compositional mediation model for a binary outcome: Application to microbiome studies

Sohn, M. B., Lu, J., & Li, H. (2021) · Bioinformatics · doi:10.1093/bioinformatics/btab605 · Cited by 17

Dysbiosis of Ocular Surface Microbiota in Patients With Refractive Allergic Conjunctival Diseases

Inada, N., Shoji, J., Harata, G., Miyazawa, K., He, F., Tomioka, A., Hirota, A., Tonozuka, Y., & Yamagami, S. (2021) · Cornea · doi:10.1097/ico.0000000000002940 · Cited by 17

Standards for Collection, Preservation, and Transportation of Fecal Samples in TCM Clinical Trials

Su, W., Du, Y., Lian, F., Wu, H., Zhang, X., Yang, W., Duan, Y., Pan, Y., Liu, W., Wu, A., et al. (2022) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2022.783682 · Cited by 19

Pubertal consumption of R. badensis subspecies acadiensis modulates LPS-induced immune responses and gut microbiome dysbiosis in a sex-specific manner

Yahfoufi, N., Kadamani, A. K., Aly, S., Sharani, S. A., Liang, J., Butcher, J., Stintzi, A., Matar, C., & Ismail, N. (2022) · Brain Behavior and Immunity · doi:10.1016/j.bbi.2022.09.013 · Cited by 17

cGAS-STING Pathway as the Target of Immunotherapy for Lung Cancer

Ge, H., Dan, Q., & Yang, Y. (2022) · Current Cancer Drug Targets · doi:10.2174/1568009623666221115095114 · Cited by 17

A study of the correlation between stroke and gut microbiota over the last 20years: a bibliometric analysis

Han, S., Cai, L., Chen, P., & Kuang, W. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1191758 · Cited by 18

Commensal bacterial hybrid nanovesicles improve immune checkpoint therapy in pancreatic cancer through immune and metabolic reprogramming

Liu, G., Huang, W., Chen, L., Tayier, N., You, L., Hamza, M., Tian, X., Wang, H., Nie, G., Zhu, M., et al. (2023) · Nano Today · doi:10.1016/j.nantod.2023.101993 · Cited by 17

Male infertility risk and gut microbiota: a Mendelian randomization study

Fu, Z.-D., Wang, Y., & Yan, H. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1228693 · Cited by 18

The Acetic Acid Produced by Lactobacillus Species Regulates Immune Function to Alleviate PEDV Infection in Piglets

Sun, M.-J., Xing, J. H., Yan, Q.-S., Zou, B., Wang, Y., Niu, T., Yu, T., Huang, H., Zhang, D., Zhang, S., et al. (2024) · Probiotics and Antimicrobial Proteins · doi:10.1007/s12602-024-10243-1 · Cited by 17

An orally active carbon monoxide-releasing molecule enhances beneficial gut microbial species to combat obesity in mice

Benrahla, D. E., Mohan, S., Tričković, M., Castelli, F. A., Alloul, G., Sobngwi, A., Abdiche, R., Kieser, S., Démontant, V., Trawinski, E., et al. (2024) · Redox Biology · doi:10.1016/j.redox.2024.103153 · Cited by 17

The new science of sleep: From cells to large-scale societies

Sharon, O., Simon, E. B., Shah, V. D., Desel, T., & Walker, M. P. (2024) · PLoS Biology · doi:10.1371/journal.pbio.3002684 · Cited by 18

Tanshinone IIA Exerts Cardioprotective Effects Through Improving Gut-Brain Axis Post-Myocardial Infarction

Zhu, T., Chen, J., Zhang, M., Tang, Z., Tong, J., Hao, X., Li, H., Xu, J., & Yang, J. (2024) · Cardiovascular Toxicology · doi:10.1007/s12012-024-09928-4 · Cited by 17

Gut microbiome and metabolomics in systemic sclerosis: feature, link and mechanisms

Yao, Q., Tan, W., & Bai, F. (2024) · Frontiers in Immunology · doi:10.3389/fimmu.2024.1475528 · Cited by 17

Advancements in the investigation of gut microbiota-based strategies for stroke prevention and treatment

Wang, M., Liu, Y., Zhong, L., Wu, F., & Wang, J. (2025) · Frontiers in Immunology · doi:10.3389/fimmu.2025.1533343 · Cited by 17

Sputum metagenomics in bronchiectasis reveals pan-European variation: an EMBARC-BRIDGE study

Thng, K. X., Tiew, P. Y., Aogáin, M. M., Narayana, J. K., Jaggi, T. K., Ivan, F. X., Shuttleworth, M. K., Long, M. B., Richardson, H., Lind, H., et al. (2025) · European Respiratory Journal · doi:10.1183/13993003.00054-2025 · Cited by 22

Microbiota control acute arterial inflammation and neointimal hyperplasia development after arterial injury

Wun, K., Theriault, B. R., Pierre, J. F., Chen, E. B., Leone, V., Harris, K. G., Xiong, L., Jiang, Q., Spedale, M., Eskandari, O. M., et al. (2018) · PLoS ONE · doi:10.1371/journal.pone.0208426 · Cited by 17

Meconium‐stained amniotic fluid exposure is associated with a lower incidence of offspring long‐term infectious morbidity

Levy, D. P., Walfisch, A., Wainstock, T., Sergienko, R., Kluwgant, D., Landau, D., & Sheiner, E. (2019) · American Journal of Reproductive Immunology · doi:10.1111/aji.13108 · Cited by 17

Leucine-Rich Immune Factor APL1 Is Associated With Specific Modulation of Enteric Microbiome Taxa in the Asian Malaria Mosquito Anopheles stephensi

Mitri, C., Bischoff, E., Belda, E., Volant, S., Ghozlane, A., Eiglmeier, K., Holm, I., Dieme, C., Brito‐Fravallo, E., Guelbeogo, M. W., et al. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.00306 · Cited by 17

Probiotics in inflammatory bowel disease: Does it work?

Silva, N. O. E., Brito, B. B. D., Silva, F. A. F. D., Santos, M. L. C., & Melo, F. F. D. (2020) · World Journal of Meta-Analysis · doi:10.13105/wjma.v8.i2.54 · Cited by 17

An 1,4-α-Glucosyltransferase Defines a New Maltodextrin Catabolism Scheme in Lactobacillus acidophilus

Andersen, S., Møller, M. S., Poulsen, J.-C. N., Pichler, M. J., Svensson, B., Goh, Y. J., Leggio, L. L., & Hachem, M. A. (2020) · Applied and Environmental Microbiology · doi:10.1128/aem.00661-20 · Cited by 18

Dietary Glucose Consumption Promotes RALDH Activity in Small Intestinal CD103+CD11b+ Dendritic Cells

Ko, H., Hong, S., Verma, R. P., Jung, J., Lee, M., Kim, N.-H., Kim, D., Surh, C. D., Kim, K. S., Rudra, D., et al. (2020) · Frontiers in Immunology · doi:10.3389/fimmu.2020.01897 · Cited by 17

Pancreatic Diseases and Microbiota: A Literature Review and Future Perspectives

Gesualdo, M., Rizzi, F., Bonetto, S., Rizza, S., Cravero, F., Saracco, G. M., & Angelis, C. G. D. (2020) · Journal of Clinical Medicine · doi:10.3390/jcm9113535 · Cited by 17

Galanin receptor 3 attenuates inflammation and influences the gut microbiota in an experimental murine colitis model

Brunner, S. M., Reichmann, F., Leitner, J., Wölfl, S., Bereswill, S., Farzi, A., Schneider, A.-M., Klieser, E., Neureiter, D., Emberger, M., et al. (2021) · Scientific Reports · doi:10.1038/s41598-020-79456-y · Cited by 17

gga-miR-142-3p negatively regulates Mycoplasma gallisepticum (HS strain)-induced inflammatory cytokine production via the NF-κB and MAPK signaling by targeting TAB2

Yang, Y., Wang, Y., Zou, M., Deng, G., & Peng, X. (2021) · Inflammation Research · doi:10.1007/s00011-021-01499-2 · Cited by 17

Responses of increasingly complex intestinal epithelium in vitro models to bacterial toll-like receptor agonists

Grouls, M., van der Zande, M., de Haan, L., & Bouwmeester, H. (2021) · Toxicology in Vitro · doi:10.1016/j.tiv.2021.105280 · Cited by 19

Commensal gut bacterium critically regulates alveolar bone homeostasis

Hathaway‐Schrader, J. D., Carson, M. D., Gerasco, J. E., Warner, A. J., Swanson, B. A., Aguirre, J. I., Westwater, C., Liu, B., & Novince, C. M. (2021) · Laboratory Investigation · doi:10.1038/s41374-021-00697-0 · Cited by 17

Oxidative Stress in the Protection and Injury of the Lacrimal Gland and the Ocular Surface: are There Perspectives for Therapeutics?

Lemos, C. N., da Silva, L. E. C. M., Faustino, J., Fantucci, M. Z., Murashima, A. D. A. B., Adriano, L., Alves, M., & Rocha, E. M. (2022) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2022.824726 · Cited by 17

Bacillus -Based Direct-Fed Microbial Reduces the Pathogenic Synergy of a Coinfection with Salmonella enterica Serovar Choleraesuis and Porcine Reproductive and Respiratory Syndrome Virus

Zuckermann, F. A., Husmann, R. J., Chen, W., Roady, P. J., Pfeiff, J., Leistikow, K. R., Duersteler, M., Son, S., King, M. R., & Augspurger, N. R. (2022) · Infection and Immunity · doi:10.1128/iai.00574-21 · Cited by 19

Gut Microbiota in Health and Disease

Ishiguro, E. E., Haskey, N., & Campbell, K. (2018) · Elsevier eBooks · doi:10.1016/b978-0-12-810541-2.00004-x · Cited by 17

Advances and Challenges of Nanoparticle-Based Macrophage Reprogramming for Cancer Immunotherapy

Kapitanova, K., Naumenko, V., Garanina, A. S., Melnikov, P., Abakumov, M. A., & Alieva, I. B. (2019) · Biochemistry (Moscow) · doi:10.1134/s0006297919070058 · Cited by 17

Gut microbial Nordihydroguaiaretic acid suppresses macrophage pyroptosis to regulate epithelial homeostasis and inflammation

Wang, J., Tan, H., Ye, Z., Weng, S., Shi, Y., Xu, J., Liu, H., Li, J., Huang, L., Zhai, L., et al. (2025) · Gut Microbes · doi:10.1080/19490976.2025.2518338 · Cited by 16

Bacterial subversion of NLR-mediated immune responses

Kienes, I., Johnston, E. L., Bitto, N. J., Kaparakis‐Liaskos, M., & Kufer, T. A. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.930882 · Cited by 16

Advances of Rumen Functional Bacteria and the Application of Micro-Encapsulation Fermentation Technology in Ruminants: A Review

Wei, W., Zhen, Y., Wang, Y., Shahzad, K., & Wang, M. (2022) · Fermentation · doi:10.3390/fermentation8100564 · Cited by 18

Consequences of collagen induced inflammatory arthritis on circadian regulation of the gut microbiome

Simpkins, D., Downton, P. J., Gray, K. J., Dickson, S. H., Maidstone, R. J., Konkel, J. E., Hepworth, M. R., Ray, D. W., Bechtold, D. A., & Gibbs, J. E. (2022) · The FASEB Journal · doi:10.1096/fj.202201728r · Cited by 16

Disturbance of gut microbiota aggravates cadmium-induced neurotoxicity in zebrafish larvae through V-ATPase

Xu, Y., Yu, Y., Zhou, Q., Xiang, Y., Chen, L., Meng, Y., She, X., Zou, F., & Meng, X. (2023) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2023.164074 · Cited by 16

Relationship of the Poultry Microbiome to Pathogen Colonization, Farm Management, Poultry Production, and Foodborne Illness Risk Assessment

Xu, X., Rothrock, M. J., Mishra, A. P., Kumar, G. D., & Mishra, A. (2023) · Journal of Food Protection · doi:10.1016/j.jfp.2023.100169 · Cited by 16

Ambient long-term exposure to organophosphorus pesticides and the human gut microbiome: an observational study

Zhang, K., Paul, K. C., Jacobs, J. P., Cockburn, M., Bronstein, J. M., Rosario, I. D., & Ritz, B. R. (2024) · Environmental Health · doi:10.1186/s12940-024-01078-y · Cited by 16

Microbial Sensing by Intestinal Myeloid Cells Controls Carcinogenesis and Epithelial Differentiation

Miyata, N., Morris, L. L., Chen, Q., Thorne, C. A., Singla, A., Zhu, W., Winter, M. G., Melton, S. D., Li, H., Sifuentes-Dominguez, L., et al. (2018) · Cell Reports · doi:10.1016/j.celrep.2018.07.066 · Cited by 16

CRTAM Shapes the Gut Microbiota and Enhances the Severity of Infection

Pérez-López, A., Nuccio, S., Ushach, I., Edwards, R. A., Pahu, R., Silva, S., Zlotnik, A., & Raffatellu, M. (2019) · The Journal of Immunology · doi:10.4049/jimmunol.1800890 · Cited by 16

Bioinformatic Methodologies in Assessing Gut Microbiota

Fox, J. D., Sims, A., Ross, M., Bettag, J., Wilder, A., Natrop, D., Borsotti, A., Kolli, S., Mehta, S., Verma, H., et al. (2024) · Microbiology Research · doi:10.3390/microbiolres15040170 · Cited by 15

The intestinal microbiota in health and disease: the influence of microbial products on immune cell homeostasis

Abt, M. C., & Artis, D. (2009) · Current Opinion in Gastroenterology · doi:10.1097/mog.0b013e328331b6b4 · Cited by 111

The Microbes of the Intestine: An Introduction to Their Metabolic and Signaling Capabilities

Hsiao, W., Metz, C. N., Singh, D. P., & Roth, J. (2008) · Endocrinology and Metabolism Clinics of North America · doi:10.1016/j.ecl.2008.08.006 · Cited by 84

Deciphering the interdependent labyrinth between gut microbiota and the immune system

Saini, A., Dalal, P., & Sharma, D. (2022) · Letters in Applied Microbiology · doi:10.1111/lam.13775 · Cited by 18

Microbiome and Gut Immunity: Innate Immune Cells

Strowig, T., Thiemann, S., & Diefenbach, A. (2018) · Springer eBooks · doi:10.1007/978-3-319-90545-7_8 · Cited by 9

Bridging intestinal immunity and gut microbiota by metabolites

Wang, G., Huang, S., Wang, Y., Cai, S., Yu, H., Liu, H., Zeng, X., Zhang, G., & Qiao, S. (2019) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-019-03190-6 · Cited by 305