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A Myc enhancer cluster regulates normal and leukaemic haematopoietic stem cell hierarchies
Abstract
The transcription factor Myc is essential for the regulation of haematopoietic stem cells and progenitors and has a critical function in haematopoietic malignancies. Here we show that an evolutionarily conserved region located 1.7 megabases downstream of the Myc gene that has previously been labelled as a 'super-enhancer' is essential for the regulation of Myc expression levels in both normal haematopoietic and leukaemic stem cell hierarchies in mice and humans. Deletion of this region in mice leads to a complete loss of Myc expression in haematopoietic stem cells and progenitors. This caused an accumulation of differentiation-arrested multipotent progenitors and loss of myeloid and B cells, mimicking the phenotype caused by Mx1-Cre-mediated conditional deletion of the Myc gene in haematopoietic stem cells. This super-enhancer comprises multiple enhancer modules with selective activity that recruits a compendium of transcription factors, including GFI1b, RUNX1 and MYB. Analysis of mice carrying deletions of individual enhancer modules suggests that specific Myc expression levels throughout most of the haematopoietic hierarchy are controlled by the combinatorial and additive activity of individual enhancer modules, which collectively function as a 'blood enhancer cluster' (BENC). We show that BENC is also essential for the maintenance of MLL-AF9-driven leukaemia in mice. Furthermore, a BENC module, which controls Myc expression in mouse haematopoietic stem cells and progenitors, shows increased chromatin accessibility in human acute myeloid leukaemia stem cells compared to blasts. This difference correlates with MYC expression and patient outcome. We propose that clusters of enhancers, such as BENC, form highly combinatorial systems that allow precise control of gene expression across normal cellular hierarchies and which also can be hijacked in malignancies.
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“For instance, the combinatorial occupancy of chromatin by multiple master TFs has revealed regulatory networks that are important for hematopoiesis (Beck et al., 2013; Schütte et al., 2016), as well as key regulatory elements necessary for HSC self-renewal (Bahr et al., 2018).”
From Unraveling Hematopoiesis through the Lens of Genomics (2020) · cites this paper as Bahr et al., 2018
In the citing paper
“Even studies at a single locus can be illuminating, as exemplified by the identification of a hematopoietic-specific enhancer of MYC that is required by HSCs (Bahr et al., 2018) (Figure 4B).”
From Unraveling Hematopoiesis through the Lens of Genomics (2020) · cites this paper as Bahr et al., 2018
Citations
Cites
Fast and accurate short read alignment with Burrows-Wheeler transform
Li, H., & Durbin, R. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp324 · Cited by 58,607
Subramanian, A., Tamayo, P., Mootha, V. K., Mukherjee, S., Ebert, B. L., Gillette, M. A., Paulovich, A., Pomeroy, S. L., Golub, T. R., Lander, E. S., et al. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0506580102 · Cited by 53,625
Model-based Analysis of ChIP-Seq (MACS)
Zhang, Y., Liu, T., Meyer, C. A., Eeckhoute, J., Johnson, D. S., Bernstein, B. E., Nusbaum, C., Myers, R. M., Brown, M., Li, W., et al. (2008) · Genome Biology · doi:10.1186/gb-2008-9-9-r137 · Cited by 18,386
An integrated encyclopedia of DNA elements in the human genome
The ENCODE Project Consortium (2012) · Nature · doi:10.1038/nature11247 · Cited by 18,072
The Molecular Signatures Database Hallmark Gene Set Collection
Liberzon, A., Birger, C., Thorvaldsdóttir, H., Ghandi, M., Mesirov, J. P., & Tamayo, P. (2015) · Cell Systems · doi:10.1016/j.cels.2015.12.004 · Cited by 13,807
Mapping and quantifying mammalian transcriptomes by RNA-Seq
Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L., & Wold, B. (2008) · Nature Methods · doi:10.1038/nmeth.1226 · Cited by 13,696
Modeling Survival Data: Extending the Cox Model
Therneau, T. M., & Grambsch, P. M. (2000) · Statistics for Biology and Health · doi:10.1007/978-1-4757-3294-8 · Cited by 8,674
Topological domains in mammalian genomes identified by analysis of chromatin interactions
Dixon, J. R., Selvaraj, S., Yue, F., Kim, A., Li, Y., Shen, Y., Hu, M., Liu, J. S., & Ren, B. (2012) · Nature · doi:10.1038/nature11082 · Cited by 6,829
DNA targeting specificity of RNA-guided Cas9 nucleases
Hsu, P. D., Scott, D. A., Weinstein, J. A., Ran, F. A., Konermann, S., Agarwala, V., Li, Y., Fine, E. J., Wu, X., Shalem, O., et al. (2013) · Nature Biotechnology · doi:10.1038/nbt.2647 · Cited by 4,741
Wang, H., Yang, H., Shivalila, C. S., Dawlaty, M. M., Cheng, A. W., Zhang, F., & Jaenisch, R. (2013) · Cell · doi:10.1016/j.cell.2013.04.025 · Cited by 3,495
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Stelmach, P., & Trumpp, A. (2023) · Haematologica · doi:10.3324/haematol.2022.280800 · Cited by 273
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Kloetgen, A., Thandapani, P., Ntziachristos, P., Ghebrechristos, Y. E., Nomikou, S., Lazaris, C., Chen, X., Hu, H., Bakogianni, S., Wang, J., et al. (2020) · Nature Genetics · doi:10.1038/s41588-020-0602-9 · Cited by 219
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Collins, P. L., Purman, C. E., Porter, S. I., Nganga, V. K., Saini, A., Hayer, K. E., Gurewitz, G. L., Sleckman, B. P., Bednarski, J. J., Bassing, C. H., et al. (2020) · Nature Communications · doi:10.1038/s41467-020-16926-x · Cited by 231
Catarino, R. R., & Stark, A. (2018) · Genes & Development · doi:10.1101/gad.310367.117 · Cited by 215
MYC: a multipurpose oncogene with prognostic and therapeutic implications in blood malignancies
Ahmadi, S. E., Rahimi, S., Zarandi, B., Chegeni, R., & Safa, M. (2021) · Journal of Hematology & Oncology · doi:10.1186/s13045-021-01111-4 · Cited by 223
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Montefiori, L. E., Bendig, S., Gu, Z., Chen, X., Pölönen, P., Ma, X., Murison, A., Zeng, A. G. X., García‐Prat, L., Dickerson, K. M., et al. (2021) · Cancer Discovery · doi:10.1158/2159-8290.cd-21-0145 · Cited by 189
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Cheng, Y., Luo, H., Izzo, F., Pickering, B. F., Nguyen, D. T. T., Myers, R. M., Schurer, A., Gourkanti, S., Brüning, J. C., Vu, L., et al. (2019) · Cell Reports · doi:10.1016/j.celrep.2019.07.032 · Cited by 175
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Long, H. K., Osterwalder, M., Welsh, I. C., Hansen, K. L., Davies, J. O. J., Liu, Y. E., Koska, M., Adams, A. T., Aho, R., Arora, N., et al. (2020) · Cell stem cell · doi:10.1016/j.stem.2020.09.001 · Cited by 166
Thandapani, P. (2019) · Pharmacology & Therapeutics · doi:10.1016/j.pharmthera.2019.02.014 · Cited by 167
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Hyle, J. W., Zhang, Y., Wright, S., Xu, B., Shao, Y., Easton, J. B., Tian, L., Feng, R., Xu, P., & Li, C. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz462 · Cited by 132
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Crump, N. T., Ballabio, E., Godfrey, L., Thorne, R., Repapi, E., Kerry, J., Tapia, M., Hua, P., Lagerholm, C., Filippakopoulos, P., et al. (2021) · Nature Communications · doi:10.1038/s41467-020-20400-z · Cited by 123
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Chen, H., & Liang, H. (2020) · Cancer Cell · doi:10.1016/j.ccell.2020.08.020 · Cited by 125
HACER: an atlas of human active enhancers to interpret regulatory variants
Wang, J., Dai, X., Berry, L. D., Cogan, J. D., Liu, Q., & Shyr, Y. (2018) · Nucleic Acids Research · doi:10.1093/nar/gky864 · Cited by 110
Golan, K., Kumari, A., Kollet, Ó., Khatib-Massalha, E., Subramaniam, M. D., Ferreira, Z. S., Avemaria, F., Rzeszotek, S., García‐García, A., Xie, S. Z.-J., et al. (2018) · Cell stem cell · doi:10.1016/j.stem.2018.08.002 · Cited by 118
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Lin, X., Liu, Y., Liu, S., Zhu, X., Wu, L., Zhu, Y., Zhao, D., Xu, X., Chemparathy, A., Wang, H., et al. (2022) · Science · doi:10.1126/science.abk3512 · Cited by 112
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Choi, J., Lysakovskaia, K., Stik, G., Demel, C., Söding, J., Tian, T. V., Graf, T., & Cramer, P. (2021) · eLife · doi:10.7554/elife.65381 · Cited by 117
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Lee, J., Xiong, F., & Li, W. (2020) · RNA Biology · doi:10.1080/15476286.2020.1712895 · Cited by 108
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Jha, R., Kouzine, F., & Levens, D. (2023) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2023.1268275 · Cited by 107
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Hoang, P. H., Dobbins, S. E., Cornish, A. J., Chubb, D., Law, P., Kaiser, M., & Houlston, R. S. (2018) · Leukemia · doi:10.1038/s41375-018-0103-3 · Cited by 87
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Hlady, R. A., Sathyanarayan, A., Thompson, J. J., Zhou, D., Wu, Q., Pham, K., Lee, J., Liu, C., & Robertson, K. D. (2019) · Hepatology · doi:10.1002/hep.30211 · Cited by 102
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Ibrahim, D. M., & Mundlos, S. (2020) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2020.02.015 · Cited by 87
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Li, G., Qu, Q., Qi, T.-T., Teng, X.-Q., Zhu, H., Wang, J., Lu, Q., & Qu, J. (2021) · Journal of Experimental & Clinical Cancer Research · doi:10.1186/s13046-021-01974-y · Cited by 89
Ober-Reynolds, B., Wang, C., Ko, J. M., Rios, E. J., Aasi, S. Z., Davis, M. M., Oro, A. E., & Greenleaf, W. J. (2023) · Nature Genetics · doi:10.1038/s41588-023-01445-4 · Cited by 83
Seo, W., Shimizu, K., Kojo, S., Okeke, A., Kohwi-shigematsu, T., Fujii, S., & Taniuchi, I. (2020) · Nature Communications · doi:10.1038/s41467-020-15375-w · Cited by 85
Lv, M., Gong, Y., Liu, X., Wang, Y., Wu, Q., Chen, J., Min, Q., Zhao, D., Li, X., Chen, D., et al. (2023) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-023-01555-9 · Cited by 85
Lu, J., Qian, J., Xu, Z., Yin, S., Zhou, L., Zheng, S., & Zhang, W. (2021) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2021.631486 · Cited by 77
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Ottema, S., Mulet‐Lazaro, R., Erpelinck-Verschueren, C. A. J., van Herk, S., Havermans, M., Varea, A. A., Vermeulen, M., Beverloo, H. B., Gröschel, S., Haferlach, T., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-25862-3 · Cited by 74
Xu, Y., Wu, Y. C., Zhang, S., Ma, P., Jin, X., Wang, Z., Yao, M., Zhang, E., Tao, B., Qin, Y., et al. (2019) · Cell Reports · doi:10.1016/j.celrep.2019.10.093 · Cited by 67
See, Y. X., Chen, K., & Fullwood, M. J. (2022) · Genome Research · doi:10.1101/gr.276313.121 · Cited by 64
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Sommerkamp, P., Altamura, S., Renders, S., Narr, A., Ladel, L., Zeisberger, P., Eiben, P. L., Fawaz, M., Rieger, M. A., Cabezas‐Wallscheid, N., et al. (2020) · Cell stem cell · doi:10.1016/j.stem.2020.03.003 · Cited by 66
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Kubota, S., Tokunaga, K., Umezu, T., Yokomizo-Nakano, T., Sun, Y., Oshima, M., Tan, K., Yang, H., Kanai, A., Iwanaga, E., et al. (2019) · Nature Communications · doi:10.1038/s41467-019-09710-z · Cited by 54
Super-enhancers in transcriptional regulation and genome organization
Wang, X., Cairns, M. J., & Yan, J. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz1038 · Cited by 154
Bempt, M. V., Demeyer, S., Broux, M., Bie, J. D., Bornschein, S., Mentens, N., Vandepoel, R., Geerdens, E., Radaelli, E., Bornhauser, B. C., et al. (2018) · Cancer Cell · doi:10.1016/j.ccell.2018.07.007 · Cited by 58
Pegoraro, A., Orioli, E., Marchi, E. D., Salvestrini, V., Milani, A., Virgilio, F. D., Curti, A., & Adinolfi, E. (2020) · Cell Death and Disease · doi:10.1038/s41419-020-03058-9 · Cited by 58
Tsuchiya, H., Ota, M., Sumitomo, S., Ishigaki, K., Suzuki, A., Sakata, T., Tsuchida, Y., Inui, H., Hirose, J., Kochi, Y., et al. (2020) · Annals of the Rheumatic Diseases · doi:10.1136/annrheumdis-2020-218189 · Cited by 58
Distinctive regulatory architectures of germline-active and somatic genes in C. elegansPreprint
Serizay, J., Dong, Y., Jänes, J., Chesney, M. A., Cerrato, C., & Ahringer, J. (2020) · Genome Research · doi:10.1101/gr.265934.120 · Cited by 56
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Xu, Y., Yu, Q., Wang, P., Wu, Z., Zhang, L., Wu, S., Li, M., Wu, B., Li, H., Zhuang, H., et al. (2022) · Advanced Science · doi:10.1002/advs.202104344 · Cited by 55
Zhong, X., Prinz, A., Steger, J., García-Cuéllar, M.-P., Radsak, M. P., Bentaher, A., & Slany, R. K. (2018) · Blood Advances · doi:10.1182/bloodadvances.2018025866 · Cited by 52
Zhou, Y., Yan, X., Feng, X., Bu, J., Dong, Y., Lin, P., Hayashi, Y., Huang, R., Olsson, A., Andreassen, P. R., et al. (2018) · Haematologica · doi:10.3324/haematol.2018.187708 · Cited by 50
Mills, T., Kain, B. N., Burchill, M. A., Danis, E. P., Lucas, E. D., Culp‐Hill, R., Cowan, C. M., Schleicher, W. E., Patel, S. B., Tran, B. T., et al. (2024) · Cell stem cell · doi:10.1016/j.stem.2024.09.010 · Cited by 52
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Chambers, C., Čermáková, K., Chan, Y. S., Kurtz, K. J., Wohlan, K., Lewis, A. H., Wang, C., Pham, A., Dejmek, M., Šála, M., et al. (2023) · Cancer Research · doi:10.1158/0008-5472.can-22-2129 · Cited by 52
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Wu, Y., Chen, S., Shao, Y. W., Su, Y., Li, Q., Wu, J., Zhu, J., Wen, H., Huang, Y., Zheng, Z., et al. (2023) · Advanced Science · doi:10.1002/advs.202304638 · Cited by 52
Ishikawa, Y., Kitaoka, S., Kawano, Y., Ishii, S., Suzuki, T., Wakahashi, K., KATO, T., Katayama, Y., & Furuyashiki, T. (2020) · British Journal of Pharmacology · doi:10.1111/bph.15203 · Cited by 50
Lu, B., He, Y., He, J., Wang, L., Liu, Z., Yang, J., Gao, Z., Lu, G., Zou, C., & Zhao, W. (2019) · Molecular Cancer Research · doi:10.1158/1541-7786.mcr-19-0470 · Cited by 48
Guo, L., Li, J., Zeng, H., Guzman, A. G., Li, T., Lee, M., Zhou, Y., Goodell, M. A., STEPHAN, C. C., Davies, P. J., et al. (2020) · Nature Communications · doi:10.1038/s41467-020-14604-6 · Cited by 47
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Dubois, F. P. B., Shapira, O., Greenwald, N. F., Zack, T. I., Wala, J. A., Tsai, J. W., Crane, A., Baguette, A., Hadjadj, D., Harutyunyan, A. S., et al. (2022) · Nature Cancer · doi:10.1038/s43018-022-00403-z · Cited by 42
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Jiang, X., Xing, L., Chen, Y., Qin, R., Song, S., Lu, Y., Xie, S., Wang, L., Pu, H., Gui, X., et al. (2020) · Molecular Therapy — Nucleic Acids · doi:10.1016/j.omtn.2020.11.009 · Cited by 45
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Somasundaram, R., Jensen, C. T., Tingvall-Gustafsson, J., Åhsberg, J., Okuyama, K., Prasad, M., Hagman, J., Wang, X., Soneji, S., Strid, T., et al. (2021) · Blood · doi:10.1182/blood.2020009564 · Cited by 38
Taylor, T., Sikorska, N., Shchuka, V. M., Chahar, S., Ji, C., Macpherson, N. N., Moorthy, S. D., de Kort, M. A. C., Mullany, S., Khader, N., et al. (2022) · Genes & Development · doi:10.1101/gad.349489.122 · Cited by 45
Andersson, M. K., Åman, P., & Stenman, G. (2019) · Cells · doi:10.3390/cells8080913 · Cited by 45
Beyes, S., Bediaga, N. G., & Zippo, A. (2021) · Cancers · doi:10.3390/cancers13194969 · Cited by 44
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Long-range regulation of transcription scales with genomic distance in a gene-specific manner
Jensen, C. L., Chen, L.-F., Swigut, T., Crocker, O. J., Yao, D., Bassik, M. C., Ferrell, J. E., Boettiger, A. N., & Wysocka, J. (2025) · Molecular Cell · doi:10.1016/j.molcel.2024.10.021 · Cited by 39
Giacomo, D. D., Starza, R. L., Gorello, P., Pellanera, F., Atak, Z. K., Keersmaecker, K. D., Pierini, V., Harrison, C. J., Arniani, S., Moretti, M., et al. (2021) · Blood · doi:10.1182/blood.2020010510 · Cited by 39
Liang, Y. J., Xu, P., Zou, Q., Luo, H., & Yu, W. (2018) · Seminars in Cancer Biology · doi:10.1016/j.semcancer.2018.09.004 · Cited by 37
Nishida, Y., Ishizawa, J., Ayoub, E., Montoya, R. H., Ostermann, L. B., Müftüoğlu, M., Ruvolo, V. R., Patsilevas, T., Scruggs, D. A., Khazaei, S., et al. (2023) · Science Advances · doi:10.1126/sciadv.adh1436 · Cited by 37
GATA3-Controlled Nucleosome Eviction Drives MYC Enhancer Activity in T-cell Development and Leukemia
Belver, L., Yang, A. Y., Alberó, R., Herranz, D., Brundu, F. G., Quinn, S. A., Pérez‐Durán, P., Álvarez, S., Gianni, F., Rashkovan, M., et al. (2019) · Cancer Discovery · doi:10.1158/2159-8290.cd-19-0471 · Cited by 38
SMARCB1 loss activates patient-specific distal oncogenic enhancers in malignant rhabdoid tumors
Liu, N.-Q., Paassen, I., Custers, L., Zeller, P., Teunissen, H., Ayyildiz, D., He, J., Buhl, J. L., Hoving, E., van Oudenaarden, A., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-43498-3 · Cited by 36
Cai, H., Liang, J., Jiang, Y., Wang, Z., Li, H., Wang, W., Wang, C., & Hou, J. (2024) · Journal of Experimental & Clinical Cancer Research · doi:10.1186/s13046-024-02996-y · Cited by 35
Exploration of Coding and Non-coding Variants in Cancer Using GenomePaint
Zhou, X., Wang, J., Patel, J. N., Valentine, M. B., Shao, Y., Newman, S., Sioson, E., Tian, L., Liu, Y., Brady, S. W., et al. (2021) · Cancer Cell · doi:10.1016/j.ccell.2020.12.011 · Cited by 34
Quantitative Single-Cell Proteomics as a Tool to Characterize Cellular HierarchiesPreprint
Schoof, E. M., Furtwängler, B., Üresin, N., Rapin, N., Savickas, S., Gentil, C., Lechman, E. R., Keller, U. A. D., Dick, J. E., & Porse, B. T. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/745679 · Cited by 41
Alu insertion variants alter gene transcript levelsPreprint
Payer, L. M., Steranka, J. P., Kryatova, M. S., Grillo, G., Lupien, M., Rocha, P. P., & Burns, K. H. (2021) · Genome Research · doi:10.1101/gr.261305.120 · Cited by 34
Developmental origins shape the paediatric cancer genome
Chen, X., Yang, W., Roberts, C. W. M., & Zhang, J. (2024) · Nature reviews. Cancer · doi:10.1038/s41568-024-00684-9 · Cited by 49
Molecular Complexity of Diffuse Large B-Cell Lymphoma: Can It Be a Roadmap for Precision Medicine?
Coccaro, N., Anelli, L., Zagaria, A., Perrone, T., Specchia, G., & Albano, F. (2020) · Cancers · doi:10.3390/cancers12010185 · Cited by 35
Focal disruption of DNA methylation dynamics at enhancers in IDH-mutant AML cells
Wilson, E. R., Helton, N., Heath, S. E., Fulton, R. S., Payton, J. E., Welch, J. S., Walter, M. J., Westervelt, P., DiPersio, J. F., Link, D. C., et al. (2021) · Leukemia · doi:10.1038/s41375-021-01476-y · Cited by 31
Effects of super-enhancers in cancer metastasis: mechanisms and therapeutic targets
Liu, S., Dai, W., Jin, B., Jiang, F., Huang, H., Hou, W., Lan, J., Jin, Y., Peng, W., & Pan, J. (2024) · Molecular Cancer · doi:10.1186/s12943-024-02033-8 · Cited by 35
Lee, H., Willi, M., Shin, H. Y., Liu, C., & Hennighausen, L. G. (2018) · Nucleic Acids Research · doi:10.1093/nar/gky891 · Cited by 29
Typical Enhancers, Super-Enhancers, and Cancers
Koutsi, M. A., Pouliou, M., Champezou, L., Vatsellas, G., Giannopoulou, A.-I., Piperi, C., & Agelopoulos, M. (2022) · Cancers · doi:10.3390/cancers14184375 · Cited by 28
Shu, M., Hong, D., Lin, H., Zhang, J., Luo, Z., Du, Y., Sun, Z., Yin, M., Yin, Y., Liu, L., et al. (2022) · Developmental Cell · doi:10.1016/j.devcel.2022.11.011 · Cited by 28
Liang, Y. J., Xu, P., Zou, Q., Luo, H., & Yu, W. (2018) · Seminars in Cancer Biology · doi:10.1016/j.semcancer.2018.09.001 · Cited by 32
Ramamoorthy, S., Kometani, K., Herman, J. S., Bayer, M., Boller, S., Edwards-Hicks, J., Ramachandran, H., Li, R., Geltink, R. I. K., Pearce, E. L., et al. (2020) · Genes & Development · doi:10.1101/gad.340216.120 · Cited by 31
Efficacy of combined CDK9/BET inhibition in preclinical models of MLL-rearranged acute leukemia
McCalmont, H., Li, K. L., Jones, L., Toubia, J., Bray, S. C. E., Casolari, D. A., Mayoh, C., Samaraweera, S. E., Lewis, I. D., Prinjha, R. K., et al. (2020) · Blood Advances · doi:10.1182/bloodadvances.2019000586 · Cited by 30
BCOR Binding to MLL-AF9 Is Essential for Leukemia via Altered EYA1, SIX, and MYC Activity
Schmidt, C., Achille, N. J., Kuntimaddi, A., Boulton, A. M., Leach, B. I., Zhang, S., Zeleznik‐Le, N. J., & Bushweller, J. H. (2020) · Blood Cancer Discovery · doi:10.1158/2643-3230.bcd-20-0036 · Cited by 31
Chakraborty, C., Nissen, I., Vincent, C. A., Hägglund, A., Hörnblad, A., & Remeseiro, S. (2023) · Nature Communications · doi:10.1038/s41467-023-41919-x · Cited by 30
Enhancer Dysfunction in 3D Genome and Disease
Xia, J., & Wei, G. (2019) · Cells · doi:10.3390/cells8101281 · Cited by 26
Metadata
- Authors
- Bahr, C., von Paleske, L., Uslu, V. V., Remeseiro, S., Takayama, N., Ng, S. W., Murison, A., Langenfeld, K., Petretich, M., Scognamiglio, R., Zeisberger, P., Benk, A. S., Amit, I., Zandstra, P. W., Lupien, M., Dick, J. E., Trumpp, A., & Spitz, F.
- Affiliations
- German Cancer Research Center (DE)
- European Molecular Biology Laboratory (DE)
- University Health Network (CA)
- University of Toronto (CA)
- Weizmann Institute of Science (IL)
- Centre National de la Recherche Scientifique (FR)
- Corresponding author
- Trumpp, Andreas
- Spitz, François
- ORCID
- Venue
- Nature
- Published
- 2018-01-17
- Volume
- 553
- Issue
- 7689
- Pages
- 515-520
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- OpenAlex
- W2783692764
- Cited by
- 328
- References
- 49
- Citations by year
- 2026: 16 · 2025: 30 · 2024: 35 · 2023: 60 · 2022: 38 · 2021: 53 · 2020: 43 · 2019: 29 · 2018: 23
- FWCI
- 13.34
- Type
- journal article
- Language
- en
- Update notices
- correction (2018-05-16)
- Open access
- closed
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- Funders
- Deutsches Krebsforschungszentrum
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Health Sciences › Medicine › Hematology › Hematopoietic Stem Cell Transplantation
- Health Sciences › Medicine › Hematology › Acute Myeloid Leukemia Research
- Keywords
- c-Myc, super-enhancers, enhancer clusters, hematopoietic stem cells, hematopoietic progenitor cells, leukemia stem cells, acute myeloid leukemia, GFI1B, RUNX1, MYB, chromatin accessibility, transcriptional regulation
- MeSH terms
- Animals, B-Lymphocytes, Cell Differentiation, Chromatin, Enhancer Elements, Genetic, Female, Gene Expression Regulation, Multigene Family, Hematopoietic Stem Cells, Humans, Leukemia, Male, Mice, Inbred C57BL, Prognosis, Transcription Factors, Neoplastic Stem Cells, Leukemia, Myeloid, Acute, Down-Regulation, Survival Analysis, Genes, myc, Gene Deletion, Sequence Deletion, Cell Lineage, Myeloid Cells, Multipotent Stem Cells, Mice
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