The DOI matches its Crossref record; 8 of the 8 references it cites were found in a registry or an index.
Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean
Open accessAbstract
Understanding soybean (Glycine max) domestication and improvement at a genetic level is important to inform future efforts to further improve a crop that provides the world's main source of oilseed. We detect 230 selective sweeps and 162 selected copy number variants by analysis of 302 resequenced wild, landrace and improved soybean accessions at >11× depth. A genome-wide association study using these new sequences reveals associations between 10 selected regions and 9 domestication or improvement traits, and identifies 13 previously uncharacterized loci for agronomic traits including oil content, plant height and pubescence form. Combined with previous quantitative trait loci (QTL) information, we find that, of the 230 selected regions, 96 correlate with reported oil QTLs and 21 contain fatty acid biosynthesis genes. Moreover, we observe that some traits and loci are associated with geographical regions, which shows that soybean populations are structured geographically. This study provides resources for genomics-enabled improvements in soybean breeding.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Basic local alignment search tool
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669
The Sequence Alignment/Map format and SAMtools
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041
Fast and accurate short read alignment with Burrows-Wheeler transform
Li, H., & Durbin, R. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp324 · Cited by 58,607
PLINK: a tool set for whole-genome association and population-based linkage analyses.
Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M. A. R., Bender, D., Maller, J., Sklar, P., de Bakker, P. I. W., Daly, M. J., et al. (2007) · The American Journal of Human Genetics · doi:10.1086/519795 · Cited by 34,089
BEDTools: a flexible suite of utilities for comparing genomic features
Quinlan, A. R., & Hall, I. M. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq033 · Cited by 27,437
Principal components analysis corrects for stratification in genome-wide association studies
Price, A. L., Patterson, N. J., Plenge, R. M., Weinblatt, M. E., Shadick, N. A., & Reich, D. (2006) · Nature Genetics · doi:10.1038/ng1847 · Cited by 10,248
Solutions for a cultivated planet
Foley, J. A., Ramankutty, N., Brauman, K. A., Cassidy, E. S., Gerber, J. S., Johnston, M., Mueller, N. D., O’Connell, C., Ray, D. K., West, P. C., et al. (2011) · Nature · doi:10.1038/nature10452 · Cited by 8,476
Yield trends are insufficient to double global crop production by 2050
Ray, D. K., Mueller, N. D., West, P. C., & Foley, J. A. (2013) · PLoS ONE · doi:10.1371/journal.pone.0066428 · Cited by 3,415
Cited by
Genomics of crop wild relatives: expanding the gene pool for crop improvement
Brozynska, M., Furtado, A., & Henry, R. J. (2016) · Plant Biotechnology Journal · doi:10.1111/pbi.12454 · Cited by 426
Lu, S., Dong, L., Fang, C., Liu, S., Kong, L., Cheng, Q., Chen, L., Su, T., Nan, H., Zhang, D., et al. (2020) · Nature Genetics · doi:10.1038/s41588-020-0604-7 · Cited by 380
Self-citationMammadov, J., Buyyarapu, R., Guttikonda, S. K., Parliament, K., Abdurakhmonov, I. Y., & Kumpatla, S. P. (2018) · Frontiers in Plant Science · doi:10.3389/fpls.2018.00886 · Cited by 298
Genetic Costs of Domestication and Improvement
Moyers, B. T., Morrell, P. L., & McKay, J. K. (2018) · Journal of Heredity · doi:10.1093/jhered/esx069 · Cited by 216
Yang, T., Liu, R., Luo, Y., Hu, S., Wang, D., Wang, C., Pandey, M. K., Ge, S., Xu, Q., Li, N., et al. (2022) · Nature Genetics · doi:10.1038/s41588-022-01172-2 · Cited by 191
Self-citation
Metadata
- Authors
- Zhou, Z., Jiang, Y., Wang, Z., Gou, Z., Lyu, J., Li, W., Yu, Y., Shu, L., Zhao, Y., Ma, Y., Fang, C., Shen, Y., Liu, T., Li, C., Li, Q., Wu, M., Wang, M., Wu, Y., Dong, Y., Wan, W., Wang, X., Ding, Z., Gao, Y., Xiang, H., Zhu, B., Lee, S.-H., Wang, W., & Tian, Z.
- Venue
- Nature Biotechnology
- Published
- 2015-02-02
- Volume
- 33
- Issue
- 4
- Pages
- 408-414
- ISSN
- 0733-222X (ISSN-L)
- 1087-0156
- 1546-1696
- OpenAlex
- W4231096068
- Cited by
- 1,102
- References
- 8
- FWCI
- 87.05
- Type
- journal article
- Language
- en
- Open access
- hybrid
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean. https://app.cochat.ai/papers/10.1038/nbt.3096
- The paper
- Zhou, Z., Jiang, Y., Wang, Z., Gou, Z., Lyu, J., Li, W., Yu, Y., Shu, L., Zhao, Y., Ma, Y., Fang, C., Shen, Y., Liu, T., Li, C., Li, Q., Wu, M., Wang, M., Wu, Y., Dong, Y., . . . Tian, Z. (2015). Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean. Nature Biotechnology. https://doi.org/10.1038/nbt.3096
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.