Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9
Doench, John G, Fusi, Nicolo, Sullender, Meagan, Hegde, Mudra, Vaimberg, Emma W, Donovan, Katherine F, Smith, Ian, Tothova, Zuzana, Wilen, Craig, Orchard, Robert, Virgin, Herbert W, Listgarten, Jennifer, Root, David E·2016·Nature Biotechnology
DOI 10.1038/nbt.3437
Cited by (1,030)
Items 501–600 of 1,030
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- Hallmarks of cancer: The CRISPR generationColette Moses, Benjamín García‐Bloj, Alan R. Harvey, Pilar Blancafort · 2018 · European Journal of Cancer
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- On-target activity predictions enable improved CRISPR–dCas9 screens in bacteriaAlicia Calvo‐Villamañán, Jérôme Wong-Ng, Rémi Planel, Hervé Ménager, Arthur Chen, Lun Cui, David Bikard · 2020 · Nucleic Acids Research
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- Recent advances in machine learning applications in metabolic engineeringPradipta Patra, Disha B.R., Pritam Kundu, Manali Das, Amit Ghosh · 2022 · Biotechnology Advances
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- Deep learning in CRISPR-Cas systems: a review of recent studiesMinhyeok Lee · 2023 · Frontiers in Bioengineering and Biotechnology
- MARCH6 and TRC8 facilitate the quality control of cytosolic and tail‐anchored proteinsSandra Stefanovic-Barrett, Anna S. Dickson, Stephen P. Burr, James C. Williamson, Ian T Lobb, Dick J. H. van den Boomen, Paul J. Lehner, James A. Nathan · 2018 · EMBO Reports
- Increasing consensus of context-specific metabolic models by integrating data-inferred cell functionsAnne Richelle, Austin W.T. Chiang, Chih‐Chung Kuo, Nathan E. Lewis · 2019 · PLoS Computational Biology
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- Prediction of off-target specificity and cell-specific fitness of CRISPR-Cas System using attention boosted deep learning and network-based gene featureQiao Liu, Di He, Lei Xie · 2019 · PLoS Computational Biology
- CRISPR Tools To Control Gene Expression in BacteriaA. Vigouroux, David Bikard · 2020 · Microbiology and Molecular Biology Reviews
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- New traits in crops produced by genome editing techniques based on deletionsvan de Wiel, C. C. M., Schaart, J. G., Lotz, L. A. P., Smulders, M. J. M. · 2017 · Plant Biotechnology Reports
- Optimization of the production of knock-in alleles by CRISPR/Cas9 microinjection into the mouse zygoteAurélien Raveux, Sandrine Vandormael‐Pournin, Michel Cohen‐Tannoudji · 2017 · Scientific Reports
- Optimization of CRISPR/Cas9 genome editing for loss-of-function in the early chick embryoShashank Gandhi, Michael L. Piacentino, Felipe Monteleone Vieceli, Marianne E. Bronner-Fraser · 2017 · Developmental Biology
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- Design, execution, and analysis of pooled in vitro CRISPR /Cas9 screensLinde A. Miles, Ralph J. Garippa, John Thomas Poirier · 2016 · FEBS Journal
- Toward an integrated map of genetic interactions in cancer cellsBenedikt Rauscher, Florian Heigwer, Luisa Henkel, Thomas Hielscher, Oksana Voloshanenko, Michael Boutros · 2018 · Molecular Systems Biology
- Efficient combinatorial targeting of RNA transcripts in single cells with Cas13 RNA Perturb-seqWessels, Hans-Hermann, Méndez-Mancilla, Alejandro, Hao, Yuhan, Papalexi, Efthymia, Mauck, William M., Lu, Lu, Morris, John A., Mimitou, Eleni P., Smibert, Peter, Sanjana, Neville E. et al. · 2023 · Nature Methods
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- CRISPR-Cas9 cleavage efficiency correlates strongly with target-sgRNA folding stability: from physical mechanism to off-target assessmentXiaojun Xu, Dongsheng Duan, Shi‐Jie Chen · 2017 · Scientific Reports
- Simultaneous Deletion of Endogenous TCRαβ for TCR Gene Therapy Creates an Improved and Safe Cellular TherapeuticLaura T. Morton, Rogier M. Reijmers, Anne K. Wouters, Christiaan Kweekel, Dennis F.G. Remst, Cilia R. Pothast, J.H. Frederik Falkenburg, Mirjam H.M. Heemskerk · 2019 · Molecular Therapy
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- VDAC2 loss elicits tumour destruction and inflammation for cancer therapySujing Yuan, Renqiang Sun, Hao Shi, Nicole M. Chapman, Haoran Hu, Cliff S. Guy, Sherri L. Rankin, Anil KC, Gustavo Palacios, Xiaoxi Meng et al. · 2025 · Nature
- Genetic modification of primary human B cells to model high-grade lymphomaRebecca Caeser, Miriam Di Re, Joanna Alicja Krupka, Jie Gao, Maribel Lara‐Chica, João M.L. Dias, Susanna L. Cooke, Rachel E. Fenner, Zelvera Usheva, Hendrik F.P. Runge et al. · 2019 · Nature Communications
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- Prioritizing disease and trait causal variants at the TNFAIP3 locus using functional and genomic featuresJohn P. Ray, Carl G. de Boer, Charles P. Fulco, Caleb A. Lareau, Masahiro Kanai, Jacob C. Ulirsch, Ryan Tewhey, Leif S. Ludwig, Steven K. Reilly, Drew T. Bergman et al. · 2020 · Nature Communications
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- BE-FLARE: a fluorescent reporter of base editing activity reveals editing characteristics of APOBEC3A and APOBEC3BMatthew A. Coelho, Songyuan Li, Luna Simona Pane, Mike A. Firth, Giovanni Ciotta, Jonathan D.J. Wrigley, Maria Emanuela Cuomo, Marcello Maresca, Ben Taylor · 2018 · BMC Biology
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- Keap1 mutation renders lung adenocarcinomas dependent on Slc33a1Rodrigo Romero, Francisco J. Sánchez Rivera, Peter M.K. Westcott, Kim L. Mercer, Arjun J. Bhutkar, Alexander Muir, Tania J González-Robles, Swanny Lamboy Rodríguez, Laura Z. Liao, Sheng Rong Ng et al. · 2020 · Nature Cancer
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