MCOLN1 is a ROS sensor in lysosomes that regulates autophagy
Open accessAbstract
Cellular stresses trigger autophagy to remove damaged macromolecules and organelles. Lysosomes ‘host’ multiple stress-sensing mechanisms that trigger the coordinated biogenesis of autophagosomes and lysosomes. For example, transcription factor (TF)EB, which regulates autophagy and lysosome biogenesis, is activated following the inhibition of mTOR, a lysosome-localized nutrient sensor. Here we show that reactive oxygen species (ROS) activate TFEB via a lysosomal Ca 2+ -dependent mechanism independent of mTOR. Exogenous oxidants or increasing mitochondrial ROS levels directly and specifically activate lysosomal TRPML1 channels, inducing lysosomal Ca 2+ release. This activation triggers calcineurin-dependent TFEB-nuclear translocation, autophagy induction and lysosome biogenesis. When TRPML1 is genetically inactivated or pharmacologically inhibited, clearance of damaged mitochondria and removal of excess ROS are blocked. Furthermore, TRPML1’s ROS sensitivity is specifically required for lysosome adaptation to mitochondrial damage. Hence, TRPML1 is a ROS sensor localized on the lysosomal membrane that orchestrates an autophagy-dependent negative-feedback programme to mitigate oxidative stress in the cell.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
MCOLN1 is a ROS sensor in lysosomes regulating autophagy.
“MCOLN1 is a ROS sensor in lysosomes regulating autophagy49”
From PICALM Alzheimer’s risk allele causes aberrant lipid droplets in microglia (2025) · cites this paper as [49]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Parkin is recruited selectively to impaired mitochondria and promotes their autophagy
Narendra, D., Tanaka, A., Suen, D.-F., & Youle, R. J. (2008) · The Journal of Cell Biology · doi:10.1083/jcb.200809125 · Cited by 4,026 · see citing works
Neurodegenerative diseases and oxidative stress
Barnham, K. J., Masters, C. L., & Bush, A. I. (2004) · Nature Reviews Drug Discovery · doi:10.1038/nrd1330 · Cited by 3,683 · see citing works
TFEB Links Autophagy to Lysosomal Biogenesis
Settembre, C., Di Malta, C., Polito, V. A., Arencibia, M. G., Vetrini, F., Erdin, S., Erdin, S. U., Huynh, T., Medina, D., Colella, P., et al. (2011) · Science · doi:10.1126/science.1204592 · Cited by 3,365 · see citing works
Reactive oxygen species are essential for autophagy and specifically regulate the activity of Atg4
Scherz‐Shouval, R., Shvets, E., Fass, E., Shorer, H., Gil, L., & Elazar, Z. (2007) · The EMBO Journal · doi:10.1038/sj.emboj.7601623 · Cited by 2,101 · see citing works
Regulation of autophagy by ROS: physiology and pathology
Scherz-Shouval, R., & Elazar, Z. (2011) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2010.07.007 · Cited by 1,263 · see citing works
Combating oxidative stress in vascular disease: NADPH oxidases as therapeutic targets
Drummond, G. R., Selemidis, S., Griendling, K. K., & Sobey, C. G. (2011) · Nature Reviews Drug Discovery · doi:10.1038/nrd3403 · Cited by 899 · see citing works
Mitochondrial bioenergetics and structural network organization
Benard, G., Bellance, N., James, D., Parrone, P., Fernandez, H., Letellier, T., & Rossignol, R. (2007) · Journal of Cell Science · doi:10.1242/jcs.03381 · Cited by 618 · see citing works
Lysosomes and oxidative stress in aging and apoptosis
Kurz, T., Terman, A., Gustafsson, B., & Brunk, U. T. (2008) · Biochimica et Biophysica Acta (BBA) - General Subjects · doi:10.1016/j.bbagen.2008.01.009 · Cited by 287 · see citing works
Lysosomal adaptation: how the lysosome responds to external cues
Settembre, C., & Ballabio, A. (2014) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a016907 · Cited by 126 · see citing works
Flagged first, then by citations
Research works printed but not linked: 35
- Murrow L. & Debnath J. Autophagy as a stress-response and quality-control mechanism: implications for cell injury and human disease. Annu. Rev. Pathol. 8, 105– 137 (2013). 23072311 PMC3971121
- Wang Y., Nartiss Y., Steipe B., McQuibban G. A. & Kim P. K. ROS-induced mitochondrial depolarization initiates PARK2/PARKIN-dependent mitochondrial degradation by autophagy. Autophagy 8, 1462– 1476 (2012). 22889933
- Shen H. M. & Mizushima N. At the end of the autophagic road: an emerging understanding of lysosomal functions in autophagy. Trends Biochem. Sci. 39, 61– 71 (2014). 24369758
- Li L., Tan J., Miao Y., Lei P. & Zhang Q. ROS and autophagy: interactions and molecular regulatory mechanisms. Cell. Mol. Neurobiol. 35, 615– 621 (2015). 25722131 PMC11486209
- Medina D. L. et al. Lysosomal calcium signalling regulates autophagy through calcineurin and TFEB. Nat. Cell Biol. 17, 288– 299 (2015). 25720963 PMC4801004
- Wang W. et al. Up-regulation of lysosomal TRPML1 channels is essential for lysosomal adaptation to nutrient starvation. Proc. Natl Acad. Sci. USA 112, E1373– E1381 (2015). 25733853 PMC4371935
- Settembre C., Fraldi A., Medina D. L. & Ballabio A. Signals from the lysosome: a control centre for cellular clearance and energy metabolism. Nat. Rev. Mol. Cell Biol. 14, 283– 296 (2013). 23609508 PMC4387238
- Martina J. A., Chen Y., Gucek M. & Puertollano R. MTORC1 functions as a transcriptional regulator of autophagy by preventing nuclear transport of TFEB. Autophagy 8, 903– 914 (2012). 22576015 PMC3427256
- Roczniak-Ferguson A. et al. The transcription factor TFEB links mTORC1 signaling to transcriptional control of lysosome homeostasis. Sci. Signal. 5, ra42 (2012). 22692423 PMC3437338
- Sardiello M. et al. A gene network regulating lysosomal biogenesis and function. Science 325, 473– 477 (2009). 19556463
- Settembre C. et al. A lysosome-to-nucleus signalling mechanism senses and regulates the lysosome via mTOR and TFEB. EMBO J. 31, 1095– 1108 (2012). 22343943 PMC3298007
- Xu H. & Ren D. Lysosomal physiology. Annu. Rev. Physiol. 77, 57– 80 (2015). 25668017 PMC4524569
- Elbaz-Alon Y. et al. A dynamic interface between vacuoles and mitochondria in yeast. Dev. Cell 30, 95– 102 (2014). 25026036
- Bogeski I. & Niemeyer B. A. Redox regulation of ion channels. Antioxid. Redox Signal. 21, 859– 862 (2014). 24930772 PMC4115641
- Wang X. et al. TPC proteins are phosphoinositide- activated sodium-selective ion channels in endosomes and lysosomes. Cell 151, 372– 383 (2012). 23063126 PMC3475186
- Dong X. P. et al. PI(3,5)P(2) controls membrane trafficking by direct activation of mucolipin Ca(2+) release channels in the endolysosome. Nat. Commun. 1, 38 (2010). 20802798 PMC2928581
- Susankova K., Tousova K., Vyklicky L., Teisinger J. & Vlachova V. Reducing and oxidizing agents sensitize heat-activated vanilloid receptor (TRPV1) current. Mol. Pharmacol. 70, 383– 394 (2006). 16614139
- Tang X. D. et al. Oxidative regulation of large conductance calcium-activated potassium channels. J. Gen. Physiol. 117, 253– 274 (2001). 11222629 PMC2225619
- Shen D. et al. Lipid storage disorders block lysosomal trafficking by inhibiting a TRP channel and lysosomal calcium release. Nat. Commun. 3, 731 (2012). 22415822 PMC3347486
- Chuang H. H. & Lin S. Oxidative challenges sensitize the capsaicin receptor by covalent cysteine modification. Proc. Natl Acad. Sci. USA 106, 20097– 20102 (2009). 19897733 PMC2785298
- Kozai D., Ogawa N. & Mori Y. Redox regulation of transient receptor potential channels. Antioxid. Redox Signal. 21, 971– 986 (2014). 24161127
- Vergarajauregui S. & Puertollano R. Two di-leucine motifs regulate trafficking of mucolipin-1 to lysosomes. Traffic 7, 337– 353 (2006). 16497227 PMC1413585
- Zhang X., Li X. & Xu H. Phosphoinositide isoforms determine compartment-specific ion channel activity. Proc. Natl Acad. Sci. USA 109, 11384– 11389 (2012). 22733759 PMC3396495
- Nishikawa T. et al. Normalizing mitochondrial superoxide production blocks three pathways of hyperglycaemic damage. Nature 404, 787– 790 (2000). 10783895
- Underwood B. R. et al. Antioxidants can inhibit basal autophagy and enhance neurodegeneration in models of polyglutamine disease. Hum. Mol. Genet. 19, 3413– 3429 (2010). 20566712 PMC2916709
- Morgan A. J., Davis L. C. & Galione A. Imaging approaches to measuring lysosomal calcium. Methods Cell Biol. 126, 159– 195 (2015). 25665446
- Vicinanza M. et al. PI(5)P regulates autophagosome biogenesis. Mol. Cell 57, 219– 234 (2015). 25578879 PMC4306530
- Smiley S. T. et al. Intracellular heterogeneity in mitochondrial membrane potentials revealed by a J-aggregate-forming lipophilic cation JC-1. Proc. Natl Acad. Sci. USA 88, 3671– 3675 (1991). 2023917 PMC51514
- Sanjana N. E., Shalem O. & Zhang F. Improved vectors and genome-wide libraries for CRISPR screening. Nat. Methods 11, 783– 784 (2014). 25075903 PMC4486245
- East D. A. & Campanella M. Ca2+ in quality control: an unresolved riddle critical to autophagy and mitophagy. Autophagy 9, 1710– 1719 (2013). 24121708
- Dong X. P. et al. The type IV mucolipidosis-associated protein TRPML1 is an endolysosomal iron release channel. Nature 455, 992– 996 (2008). 18794901 PMC4301259
- McNeil P. Membrane repair redux: redox of MG53. Nat. Cell Biol. 11, 7– 9 (2009). 19122591
- Ma X. et al. Regulation of the transcription factor EB-PGC1 α axis by beclin-1 controls mitochondrial quality and cardiomyocyte death under stress. Mol. Cell. Biol. 35, 956– 976 (2015). 25561470 PMC4333088
- Cheng X., Shen D., Samie M. & Xu H. Mucolipins: Intracellular TRPML1-3 channels. FEBS Lett. 584, 2013– 2021 (2010). 20074572 PMC2866799
- Cerny J. et al. The small chemical vacuolin-1 inhibits Ca(2+)-dependent lysosomal exocytosis but not cell resealing. EMBO Rep. 5, 883– 888 (2004). 15332114 PMC1299144
Cited by
Sorted by citations
Lysosomes as dynamic regulators of cell and organismal homeostasis
Ballabio, A., & Bonifacino, J. S. (2020) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-019-0185-4 · Cited by 1,469 · see citing works
Gómez-Virgilio, L., Silva-Lucero, M.-D.-C., Flores-Morelos, D.-S., Gallardo-Nieto, J., Lopez-Toledo, G., Abarca-Fernandez, A.-M., Zacapala-Gómez, A.-E., Luna-Muñoz, J., Montiel-Sosa, F., Soto-Rojas, L. O., et al. (2022) · Cells · doi:10.3390/cells11152262 · Cited by 431 · see citing works
Mechanisms of autophagy–lysosome dysfunction in neurodegenerative diseases
Nixon, R. A., & Rubinsztein, D. C. (2024) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-024-00757-5 · Cited by 435 · see citing works
Amino acid-dependent control of mTORC1 signaling: a variety of regulatory modes
Takahara, T., Amemiya, Y., Sugiyama, R., Maki, M., & Shibata, H. (2020) · Journal of Biomedical Science · doi:10.1186/s12929-020-00679-2 · Cited by 300 · see citing works
Davis, M. J., Earley, S., Li, Y.-S., & Chien, S. (2023) · Physiological Reviews · doi:10.1152/physrev.00053.2021 · Cited by 273 · see citing works
Mitochondrial Dysfunction and Neurodegeneration in Lysosomal Storage Disorders
Plotegher, N., & Duchen, M. R. (2017) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2016.12.003 · Cited by 161 · see citing works
Dendrogenin A drives LXR to trigger lethal autophagy in cancers
Segala, G., David, M., de Medina, P., Poirot, M. C., Serhan, N., Vergez, F., Mougel, A., Saland, E., Carayon, K., Leignadier, J., et al. (2017) · Nature Communications · doi:10.1038/s41467-017-01948-9 · Cited by 125 · see citing works
Preserving Lysosomal Function in the Aging Brain: Insights from Neurodegeneration
Peng, W., Minakaki, G., Nguyen, M., & Krainc, D. (2019) · Neurotherapeutics · doi:10.1007/s13311-019-00742-3 · Cited by 79 · see citing works
PICALM Alzheimer’s risk allele causes aberrant lipid droplets in microglia
Kozlova, A., Zhang, S., Sudwarts, A., Zhang, H., Smirnou, S., Byeon, S. K., Thapa, C., Sun, X., Stephenson, K., Zhao, X., et al. (2025) · Nature · doi:10.1038/s41586-025-09486-x · Cited by 53 · see citing works
“5d), two of which are related to lysosomal function: MCOLN1 is a ROS sensor in lysosomes regulating autophagy 49 , and GRN encodes the lysosomal protein progranulin related to neurodegenerative diseases 50 .”
Lin, T.-K., Lin, K.-J., Lin, K.-L., Liou, C.-W., Chen, S.-D., Chuang, Y.-C., Wang, P.-W., Chuang, J.-H., & Wang, T.-J. (2020) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2020.607392 · Cited by 19 · see citing works
- Authors
- Zhang, X., Cheng, X., Yu, L., Yang, J., Calvo, R., Patnaik, S., Hu, X., Gao, Q., Yang, M., Lawas, M., Delling, M., Marugan, J., Ferrer, M., & Xu, H.
- Affiliations
- University of Michigan (US)
- National Institutes of Health (US)
- Boston Children's Hospital (US)
- Corresponding author
- Xu, Haoxing
- ORCID
- Venue
- Nature Communications
- Published
- 2016-06-30
- Volume
- 7
- Issue
- 1
- Pages
- 12109-12109
- ISSN
- 2041-1723 (ISSN-L)
- PMC
- PMC4931332
- OpenAlex
- W2464503524
- Cited by
- 558
- References
- 9
- Citations by year
- 2026: 39 · 2025: 62 · 2024: 78 · 2023: 59 · 2022: 61 · 2021: 75 · 2020: 62 · 2019: 47 · 2018: 31 · 2017: 34 · 2016: 10
- FWCI
- 37.09
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Nature Communications (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- National Institutes of Health (AR060837, NS062792)
- National Institute of Mental Health (R03MH096595)
- National Institute of Neurological Disorders and Stroke (R21NS091928, R01NS062792)
- National Institute of Arthritis and Musculoskeletal and Skin Diseases (R01AR060837)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Physiology › Calcium signaling and nucleotide metabolism
- Health Sciences › Medicine › Epidemiology › Autophagy in Disease and Therapy
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Redox biology and oxidative stress
- Keywords
- MCOLN1, TRPML1, reactive oxygen species, lysosomes, autophagy, TFEB, lysosomal calcium release, calcineurin, mitochondrial damage, lysosomal biogenesis, oxidative stress, autophagosome formation
- MeSH terms
- Animals, Autophagy, Organelle Biogenesis, Calcium, Chlorocebus aethiops, HeLa Cells, Humans, Lysosomes, Microtubule-Associated Proteins, Mitochondria, Reactive Oxygen Species, Patch-Clamp Techniques, COS Cells, Transient Receptor Potential Channels, Mice, Basic Helix-Loop-Helix Leucine Zipper Transcription Factors, HEK293 Cells
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review