Plasticity of Hopx(+) type I alveolar cells to regenerate type II cells in the lung
Open accessAbstract
The plasticity of differentiated cells in adult tissues undergoing repair is an area of intense research. Pulmonary alveolar type II cells produce surfactant and function as progenitors in the adult, demonstrating both self-renewal and differentiation into gas exchanging type I cells. In vivo, type I cells are thought to be terminally differentiated and their ability to give rise to alternate lineages has not been reported. Here we show that Hopx becomes restricted to type I cells during development. However, unexpectedly, lineage-labelled Hopx+ cells both proliferate and generate type II cells during adult alveolar regrowth following partial pneumonectomy. In clonal 3D culture, single Hopx+ type I cells generate organoids composed of type I and type II cells, a process modulated by TGFβ signalling. These findings demonstrate unanticipated plasticity of type I cells and a bidirectional lineage relationship between distinct differentiated alveolar epithelial cell types in vivo and in single-cell culture. Alveoli are the lung’s functional units composed of two major epithelial cell types, type I and type II. Type II cells are adult lung stem cells, but this study shows that differentiated Type I cells can also self-renew and give rise to Type II cells, revealing a bidirectional relationship between lung epithelial cell types.
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Reprogramming of differentiated cells into progenitor-like cells is an important injury-repair paradigm independent of adult stem cells in various epithelial tissues in mammals.
“The reprogramming of differentiated cells into progenitor-like cells has recently been discovered as an important injury-repair paradigm independent of adult stem cells in a variety of epithelial tissues in mammals, 1 such as the lung, 2 intestine, 3 pancreas, 4 and liver.5,6”
From Kupffer-cell-derived IL-6 is repurposed for hepatocyte dedifferentiation via activating progenitor genes from injury-specific enhancers (2023) · cites this paper as [2]
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A robust and high-throughput Cre reporting and characterization system for the whole mouse brain
Madisen, L., Zwingman, T. A., Sunkin, S. M., Oh, S. W., Zariwala, H. A., Gu, H., Ng, L. L., Palmiter, R. D., Hawrylycz, M. J., Jones, A. R., et al. (2010) · Nature Neuroscience · doi:10.1038/nn.2467 · Cited by 6,907 · see citing works
A global double-fluorescent Cre reporter mouse
Muzumdar, M. D., Tasic, B., Miyamichi, K., Li, L., & Luo, L. (2007) · genesis · doi:10.1002/dvg.20335 · Cited by 3,491 · see citing works
Self-citationIdentification of Bronchioalveolar Stem Cells in Normal Lung and Lung Cancer
Kim, C. F. B., Jackson, E. L., Woolfenden, A. E., Lawrence, S., Babar, I., Vogel, S., Crowley, D. G., Bronson, R. T., & Jacks, T. (2005) · Cell · doi:10.1016/j.cell.2005.03.032 · Cited by 2,196 · see citing works
Analysis of lung tumor initiation and progression using conditional expression of oncogenic K-rasPreprint
Jackson, E. L., Willis, N. A., Mercer, K. L., Bronson, R. T., Crowley, D. G., Montoya, R., Jacks, T., & Tuveson, D. A. (2001) · Genes & Development · doi:10.1101/gad.943001 · Cited by 1,877 · see citing works
Type 2 alveolar cells are stem cells in adult lung
Barkauskas, C. E., Cronce, M. J., Rackley, C. R., Bowie, E. J., Keene, D. R., Stripp, B. R., Randell, S. H., Noble, P. W., & Hogan, B. L. M. (2013) · Journal of Clinical Investigation · doi:10.1172/jci68782 · Cited by 1,776 · see citing works
Self-citationReconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq
Treutlein, B., Brownfield, D. G., Wu, A. R., Neff, N. F., Mantalas, G. L., Espinoza, F. H., Desai, T. J., Krasnow, M. A., & Quake, S. R. (2014) · Nature · doi:10.1038/nature13173 · Cited by 1,342 · see citing works
Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain
Hama, H., Kurokawa, H., Kawano, H., Ando, R., Shimogori, T., Noda, H., Fukami, K., Sakaue-Sawano, A., & Miyawaki, A. (2011) · Nature Neuroscience · doi:10.1038/nn.2928 · Cited by 1,147 · see citing works
Alveolar progenitor and stem cells in lung development, renewal and cancer
Desai, T., Brownfield, D., & Krasnow, M. A. (2014) · Nature · doi:10.1038/nature12930 · Cited by 1,066 · see citing works
Rock, J. R., Barkauskas, C. E., Cronce, M. J., Xue, Y., Harris, J. R., Liang, J., Noble, P. W., & Hogan, B. L. M. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1117988108 · Cited by 1,033 · see citing works
Self-citationPreparing for the First Breath: Genetic and Cellular Mechanisms in Lung Development
Morrisey, E. E., & Hogan, B. L. M. (2010) · Developmental Cell · doi:10.1016/j.devcel.2009.12.010 · Cited by 967 · see citing works
Self-citationHogan, B. L. M., Barkauskas, C. E., Chapman, H. A., Epstein, J. A., Jain, R., Hsia, C. C. W., Niklason, L., Calle, E., Le, A., Randell, S. H., et al. (2014) · Cell Stem Cell · doi:10.1016/j.stem.2014.07.012 · Cited by 876 · see citing works
Self-citationThe branching programme of mouse lung development
Metzger, R. J., Klein, O. D., Martin, G. R., & Krasnow, M. A. (2008) · Nature · doi:10.1038/nature07005 · Cited by 787 · see citing works
Interconversion Between Intestinal Stem Cell Populations in Distinct Niches
Takeda, N., Jain, R., LeBoeuf, M. R., Wang, Q., Lu, M. M., & Epstein, J. A. (2011) · Science · doi:10.1126/science.1213214 · Cited by 742 · see citing works
Self-citationDedifferentiation of committed epithelial cells into stem cells in vivo
Tata, P. R., Mou, H., Pardo–Saganta, A., Zhao, R., Prabhu, M., Law, B. M., Vinarsky, V., Cho, J. L., Breton, S., Sahay, A., et al. (2013) · Nature · doi:10.1038/nature12777 · Cited by 657 · see citing works
Lung development: orchestrating the generation and regeneration of a complex organ
Herriges, M., & Morrisey, E. E. (2014) · Development · doi:10.1242/dev.098186 · Cited by 613 · see citing works
Regulation of early lung morphogenesis: questions, facts and controversies
Cardoso, W., & Lu, J.-N. (2006) · Development · doi:10.1242/dev.02310 · Cited by 601 · see citing works
Plasticity of epithelial stem cells in tissue regeneration
Blanpain, C., & Fuchs, E. (2014) · Science · doi:10.1126/science.1242281 · Cited by 589 · see citing works
Transformation of alveolar Type 2 cells to Type 1 cells following exposure to NO2
Evans, M. J., Cabral, L. J., Stephens, R. J., & Freeman, G. (1975) · Experimental and Molecular Pathology · doi:10.1016/0014-4800(75)90059-3 · Cited by 587 · see citing works
Stange, D. E., Koo, B., Huch, M., Sibbel, G., Başak, O., Lyubimova, A., Kujala, P., Bartfeld, S., Köster, J., Geahlen, J. H., et al. (2013) · Cell · doi:10.1016/j.cell.2013.09.008 · Cited by 509 · see citing works
The Id2+ distal tip lung epithelium contains individual multipotent embryonic progenitor cells
Rawlins, E. L., Clark, C. P., Xue, Y., & Hogan, B. L. M. (2009) · Development · doi:10.1242/dev.037317 · Cited by 371 · see citing works
Self-citationEvidence for type II cells as cells of origin of K-Ras–induced distal lung adenocarcinoma
Xu, X., Rock, J. R., Lu, Y., Futtner, C. R., Schwab, B., Guinney, J., Hogan, B. L. M., & Onaitis, M. W. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1112499109 · Cited by 304 · see citing works
Self-citationHop Is an Unusual Homeobox Gene that Modulates Cardiac Development
Chen, F., Kook, H., Milewski, R. C. K., Gitler, A. D., Lu, M. M., Li, J., Nazarian, R., Schnepp, R. W., Jen, K., Biben, C., et al. (2002) · Cell · doi:10.1016/s0092-8674(02)00932-7 · Cited by 288 · see citing works
Self-citationRethinking Differentiation: Stem Cells, Regeneration, and Plasticity
Alvarado, A. S., & Yamanaka, S. (2014) · Cell · doi:10.1016/j.cell.2014.02.041 · Cited by 272 · see citing works
Sox9 plays multiple roles in the lung epithelium during branching morphogenesis
Rockich, B. E., Hrycaj, S., Shih, H.-P., Nagy, M. S., Ferguson, M. A. H., Kopp, J. L., Sander, M., Wellik, D. M., & Spence, J. R. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1311847110 · Cited by 267 · see citing works
The nature of stem cells: state rather than entity
Zipori, D. (2004) · Nature Reviews Genetics · doi:10.1038/nrg1475 · Cited by 256 · see citing works
Lung epithelial branching program antagonizes alveolar differentiation
Chang, D. R., Alanis, D. M., Miller, R. K., Ji, H. L., Akiyama, H., McCrea, P. D., & Chen, J. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1311760110 · Cited by 180 · see citing works
Lowe, D. A., Lund, T. C., & Alway, S. E. (1998) · American Journal of Physiology-Cell Physiology · doi:10.1152/ajpcell.1998.275.1.c155 · Cited by 119 · see citing works
Morty, R. E., Königshoff, M., & Eickelberg, O. (2009) · Proceedings of the American Thoracic Society · doi:10.1513/pats.200908-087rm · Cited by 114 · see citing works
Hp, K., Fr, R., Kapançi, Y., & Weibel, E. R. (1969) · PubMed · Cited by 110 · see citing works
TGF‐β signaling is dynamically regulated during the alveolarization of rodent and human lungs
Alcazar, M. A. A., Michiels‐Corsten, M., Vicencio, A. G., Reiss, I. K. M., Ryu, J., de Krijger, R. R., Haddad, G. G., Tibboel, D., Seeger, W., Eickelberg, O., et al. (2007) · Developmental Dynamics · doi:10.1002/dvdy.21403 · Cited by 101 · see citing works
Modulation of T1α expression with alveolar epithelial cell phenotype in vitro
Borok, Z., Danto, S. I., Lubman, R. L., Cao, Y. X., Williams, M. C., & Crandall, E. D. (1998) · American Journal of Physiology-Lung Cellular and Molecular Physiology · doi:10.1152/ajplung.1998.275.1.l155 · Cited by 96 · see citing works
Dituri, F., Mazzocca, A., Peidrò, F. J., Papappicco, P., Fabregat, I., Santis, F. D., Paradiso, A., Sabbà, C., & Giannelli, G. (2013) · PLoS ONE · doi:10.1371/journal.pone.0067109 · Cited by 95 · see citing works
Spatial mapping and quantification of developmental branching morphogenesis
Short, K. M., Hodson, M. J., & Smyth, I. (2012) · Development · doi:10.1242/dev.088500 · Cited by 87 · see citing works
Yin, Z., Gonzales, L. W., Kolla, V., Rath, N., Zhang, Y., Lu, M. M., Kimura, S., Ballard, P. L., Beers, M. F., Epstein, J. A., et al. (2006) · American Journal of Physiology-Lung Cellular and Molecular Physiology · doi:10.1152/ajplung.00385.2005 · Cited by 83 · see citing works
Self-citationRat alveolar type I cells proliferate, express OCT-4, and exhibit phenotypic plasticity in vitro
Gonzalez, R. F., Allen, L., & Dobbs, L. G. (2009) · American Journal of Physiology-Lung Cellular and Molecular Physiology · doi:10.1152/ajplung.90389.2008 · Cited by 79 · see citing works
Facultative stem cells in liver and pancreas: Fact and fancy
Yanger, K., & Stanger, B. Z. (2011) · Developmental Dynamics · doi:10.1002/dvdy.22561 · Cited by 77 · see citing works
Takeda, N., Jain, R., LeBoeuf, M. R., Padmanabhan, A., Wang, Q., Li, L., Lu, M. M., Millar, S. E., & Epstein, J. A. (2013) · Development · doi:10.1242/dev.093005 · Cited by 71 · see citing works
Self-citationDituri, F., Mazzocca, A., Fernando, J., Papappicco, P., Fabregat, I., Santis, F. D., Paradiso, A., Sabbà, C., & Giannelli, G. (2013) · PLoS ONE · doi:10.1371/annotation/c943a596-3965-4a5b-a27c-55c16685ea32 · Cited by 37 · see citing works
Pneumonectomy in the Mouse: Technique and Perioperative Management
Sakurai, M. K., Greene, A. K., Wilson, J. M., Fauza, D. O., & Puder, M. (2005) · Journal of Investigative Surgery · doi:10.1080/08941930591004485 · Cited by 29 · see citing works
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Sorted by citations
Modeling Development and Disease with Organoids
Clevers, H. (2016) · Cell · doi:10.1016/j.cell.2016.05.082 · Cited by 3,196 · see citing works
Hofer, M., & Lutolf, M. P. (2021) · Nature Reviews Materials · doi:10.1038/s41578-021-00279-y · Cited by 1,184 · see citing works
Progress and potential in organoid research
Rossi, G., Manfrin, A., & Lutolf, M. P. (2018) · Nature Reviews Genetics · doi:10.1038/s41576-018-0051-9 · Cited by 1,182 · see citing works
Wu, H., Kirita, Y., Donnelly, E. L., & Humphreys, B. D. (2019) · Journal of the American Society of Nephrology · doi:10.1681/asn.2018090912 · Cited by 752 · see citing works
A three-dimensional model of human lung development and disease from pluripotent stem cells
Chen, Y., Huang, S. X. L., de Carvalho, A. L. R. T., Ho, S., Islam, M. N., Volpi, S., Notarangelo, L. D., Ciancanelli, M. J., Casanova, J., Bhattacharya, J., et al. (2017) · Nature Cell Biology · doi:10.1038/ncb3510 · Cited by 606 · see citing works
TGF-β Signaling in Lung Health and Disease
Saito, A., Horie, M., & Nagase, T. (2018) · International Journal of Molecular Sciences · doi:10.3390/ijms19082460 · Cited by 501 · see citing works
Lung organoids: current uses and future promise
Barkauskas, C. E., Chung, M.-I., Fioret, B. A., Gao, X., Katsura, H., & Hogan, B. L. M. (2017) · Development · doi:10.1242/dev.140103 · Cited by 447 · see citing works
Self-citationThe Cellular and Physiological Basis for Lung Repair and Regeneration: Past, Present, and Future
Basil, M. C., Katzen, J., Engler, A. E., Guo, M., Herriges, M. J., Kathiriya, J. J., Windmueller, R., Ysasi, A. B., Zacharias, W. J., Chapman, H. A., et al. (2020) · Cell Stem Cell · doi:10.1016/j.stem.2020.03.009 · Cited by 414 · see citing works
Alveolar Epithelial Type II Cells as Drivers of Lung Fibrosis in Idiopathic Pulmonary Fibrosis
Parimon, T., Yao, C., Stripp, B. R., Noble, P. W., & Chen, P. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21072269 · Cited by 386 · see citing works
Adult cell plasticity in vivo: de-differentiation and transdifferentiation are back in style
Merrell, A. J., & Stanger, B. Z. (2016) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm.2016.24 · Cited by 369 · see citing works
Chung, M.-I., Bujnis, M. N., Barkauskas, C. E., Kobayashi, Y., & Hogan, B. L. M. (2018) · Development · doi:10.1242/dev.163014 · Cited by 311 · see citing works
Self-citationLung regeneration by multipotent stem cells residing at the bronchioalveolar-duct junction
Liu, Q., Liu, K., Cui, G., Huang, X., Yao, S., Guo, W., Qin, Z., Li, Y., Yang, R., Pu, W., et al. (2019) · Nature Genetics · doi:10.1038/s41588-019-0346-6 · Cited by 320 · see citing works
Yap/Taz regulate alveolar regeneration and resolution of lung inflammation
LaCanna, R., Liccardo, D., Zhang, P., Tragesser, L. E., Wang, Y., Cao, T., Chapman, H. A., Morrisey, E. E., Shen, H., Koch, W. J., et al. (2019) · Journal of Clinical Investigation · doi:10.1172/jci125014 · Cited by 290 · see citing works
De novo formation of the biliary system by TGFβ-mediated hepatocyte transdifferentiation
Schaub, J. R., Huppert, K. A., Kurial, S. N. T., Hsu, B. Y., Cast, A. E., Donnelly, B., Karns, R. A., Chen, F., Rezvani, M., Luu, H. Y., et al. (2018) · Nature · doi:10.1038/s41586-018-0075-5 · Cited by 289 · see citing works
Nikolić, M., Caritg, O., Jeng, Q., Johnson, J.-A., Sun, D., Howell, K. J., Brady, J., Laresgoiti, U., Allen, G. E., Butler, R., et al. (2017) · eLife · doi:10.7554/elife.26575 · Cited by 270 · see citing works
An ex vivo model to induce early fibrosis-like changes in human precision-cut lung slices
Alsafadi, H. N., Staab-Weijnitz, C. A., Lehmann, M., Lindner, M., Peschel, B., Königshoff, M., & Wagner, D. E. (2017) · American Journal of Physiology-Lung Cellular and Molecular Physiology · doi:10.1152/ajplung.00084.2017 · Cited by 263 · see citing works
Frank, D. B., Peng, T., Zepp, J. A., Snitow, M. E., Vincent, T. L., Penkala, I. J., Cui, Z., Herriges, M. J., Morley, M. P., Zhou, S., et al. (2016) · Cell Reports · doi:10.1016/j.celrep.2016.11.001 · Cited by 277 · see citing works
Cellular crosstalk in the development and regeneration of the respiratory system
Zepp, J. A., & Morrisey, E. E. (2019) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-019-0141-3 · Cited by 265 · see citing works
Long-term expansion of alveolar stem cells derived from human iPS cells in organoids
Yamamoto, Y., Gotoh, S., Korogi, Y., Seki, M., Konishi, S., Ikeo, S., Sone, N., Nagasaki, T., Matsumoto, H., Muro, S., et al. (2017) · Nature Methods · doi:10.1038/nmeth.4448 · Cited by 268 · see citing works
Recruited Monocytes and Type 2 Immunity Promote Lung Regeneration following Pneumonectomy
Lechner, A. J., Driver, I. H., Lee, J., Conroy, C., Nagle, A., Locksley, R. M., & Rock, J. R. (2017) · Cell stem cell · doi:10.1016/j.stem.2017.03.024 · Cited by 255 · see citing works
Pulmonary alveolar type I cell population consists of two distinct subtypes that differ in cell fate
Wang, Y., Tang, Z., Huang, H., Li, J., Wang, Z., Yu, Y., Zhang, C., Li, J., Dai, H., Wang, F., et al. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1719474115 · Cited by 233 · see citing works
Defining Adult Stem Cells by Function, not by Phenotype
Clevers, H. C., & Watt, F. M. (2018) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-062917-012341 · Cited by 226 · see citing works
The Strength of Mechanical Forces Determines the Differentiation of Alveolar Epithelial Cells
Li, J., Wang, Z., Chu, Q., Jiang, K., Li, J., & Tang, N. (2018) · Developmental Cell · doi:10.1016/j.devcel.2018.01.008 · Cited by 226 · see citing works
Epigenomic State Transitions Characterize Tumor Progression in Mouse Lung Adenocarcinoma
LaFave, L. M., Kartha, V. K., Ma, S., Meli, K., Priore, I. S. D., Lareau, C. A., Naranjo, S., Westcott, P. M. K., Duarte, F. M., Sankar, V., et al. (2020) · Cancer Cell · doi:10.1016/j.ccell.2020.06.006 · Cited by 207 · see citing works
Best, S. A., De Souza, D. P., Kersbergen, A., Policheni, A. N., Dayalan, S., Tull, D., Rathi, V., Gray, D. H., Ritchie, M. E., McConville, M. J., et al. (2018) · Cell Metabolism · doi:10.1016/j.cmet.2018.02.006 · Cited by 217 · see citing works
Sox9-Positive Progenitor Cells Play a Key Role in Renal Tubule Epithelial Regeneration in Mice
Kang, H. M., Huang, S., Reidy, K. J., Han, S. H., Chinga, F., & Suszták, K. (2016) · Cell Reports · doi:10.1016/j.celrep.2015.12.071 · Cited by 196 · see citing works
Plasticity in the lung: making and breaking cell identity
Tata, P. R., & Rajagopal, J. (2017) · Development · doi:10.1242/dev.143784 · Cited by 187 · see citing works
In Vitro Models to Study Human Lung Development, Disease and Homeostasis.
Miller, A. J., & Spence, J. (2017) · Physiology · doi:10.1152/physiol.00041.2016 · Cited by 166 · see citing works
Riemondy, K. A., Jansing, N. L., Jiang, P., Redente, E. F., Gillen, A. E., Fu, R., Miller, A. J., Spence, J. R., Gerber, A. N., Hesselberth, J. R., et al. (2019) · JCI Insight · doi:10.1172/jci.insight.123637 · Cited by 159 · see citing works
Nová, Z., Škovierová, H., & Čalkovská, A. (2019) · International Journal of Molecular Sciences · doi:10.3390/ijms20040831 · Cited by 164 · see citing works
A census of the lung: CellCards from LungMAP
Sun, X., Perl, A. T., Li, R., Bell, S. M., Sajti, E., Kalinichenko, V. V., Kalin, T. V., Misra, R. S., Deshmukh, H. S., Clair, G., et al. (2021) · Developmental Cell · doi:10.1016/j.devcel.2021.11.007 · Cited by 157 · see citing works
Communication in Neural Circuits: Tools, Opportunities, and Challenges
Lerner, T. N., Ye, L., & Deisseroth, K. (2016) · Cell · doi:10.1016/j.cell.2016.02.027 · Cited by 159 · see citing works
Early lineage specification defines alveolar epithelial ontogeny in the murine lung
Frank, D. B., Penkala, I. J., Zepp, J. A., Sivakumar, A., Linares-Saldana, R., Zacharias, W. J., Stolz, K., Pankin, J., Lu, M., Wang, Q., et al. (2019) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1813952116 · Cited by 151 · see citing works
Self-citationRay, S., Chiba, N., Yao, C., Guan, X., McConnell, A. M., Brockway, B., Que, L. G., McQualter, J. L., & Stripp, B. R. (2016) · Stem Cell Reports · doi:10.1016/j.stemcr.2016.09.010 · Cited by 150 · see citing works
Beers, M. F., & Moodley, Y. P. (2017) · American Journal of Respiratory Cell and Molecular Biology · doi:10.1165/rcmb.2016-0426ps · Cited by 149 · see citing works
STAT3–BDNF–TrkB signalling promotes alveolar epithelial regeneration after lung injury
Paris, A. J., Hayer, K. E., Oved, J. H., Avgousti, D. C., Toulmin, S. A., Zepp, J. A., Zacharias, W. J., Katzen, J. B., Basil, M. C., Kremp, M. M., et al. (2020) · Nature Cell Biology · doi:10.1038/s41556-020-0569-x · Cited by 148 · see citing works
Development and plasticity of alveolar type 1 cells
Yang, J., Hernandez, B. J., Alanis, D. M., Narváez, O., Ellis, L. V., Akiyama, H., Evans, S. E., Ostrin, E. J., & Chen, J. (2015) · Development · doi:10.1242/dev.130005 · Cited by 145 · see citing works
Alsafadi, H. N., Uhl, F. E., Pineda, R., Bailey, K. E., Rojas, M. M., Wagner, D. E., & Königshoff, M. (2020) · American Journal of Respiratory Cell and Molecular Biology · doi:10.1165/rcmb.2019-0276tr · Cited by 145 · see citing works
Age-dependent alveolar epithelial plasticity orchestrates lung homeostasis and regeneration
Penkala, I. J., Liberti, D. C., Pankin, J., Sivakumar, A., Kremp, M. M., Jayachandran, S., Katzen, J. B., Leach, J. P., Windmueller, R., Stolz, K., et al. (2021) · Cell stem cell · doi:10.1016/j.stem.2021.04.026 · Cited by 145 · see citing works
da Silva, D. M. P. G. B., Nardiello, C., Pozarska, A., & Morty, R. E. (2015) · American Journal of Physiology-Lung Cellular and Molecular Physiology · doi:10.1152/ajplung.00268.2015 · Cited by 141 · see citing works
Tracing the origin of alveolar stem cells in lung repair and regeneration
Liu, K., Meng, X., Liu, Z., Tang, M., Lv, Z., Huang, X., Jin, H., Han, X., Liu, X., Pu, W., et al. (2024) · Cell · doi:10.1016/j.cell.2024.03.010 · Cited by 138 · see citing works
Li, L., Cui, L., Lin, P., Liu, Z., Bao, S., Ma, X., Nan, H., Zhu, W., Cen, J., Mao, Y., et al. (2023) · Cell Stem Cell · doi:10.1016/j.stem.2023.01.009 · Cited by 134 · see citing works
Self-citationFinn, J., Sottoriva, K., Pajcini, K. V., Kitajewski, J. K., Chen, C., Zhang, W., Malik, A. B., & Liu, Y. (2019) · Cell Reports · doi:10.1016/j.celrep.2019.02.046 · Cited by 133 · see citing works
Gkatzis, K., Taghizadeh, S., Huh, D., Stainier, D. Y. R., & Bellusci, S. (2018) · European Respiratory Journal · doi:10.1183/13993003.00876-2018 · Cited by 127 · see citing works
Li, W., Yang, L., He, Q., Hu, C., Zhu, L., Ma, X., Ma, X., Bao, S., Li, L., Chen, Y., et al. (2019) · Cell Stem Cell · doi:10.1016/j.stem.2019.06.008 · Cited by 124 · see citing works
Ren, X., Yang, X., Cheng, B., Chen, X., Zhang, T., He, Q., Li, B., Li, Y., Tang, X.-R., Wen, X., et al. (2017) · Nature Communications · doi:10.1038/ncomms14053 · Cited by 121 · see citing works
Epithelial Stem and Progenitor Cells in Lung Repair and Regeneration
Alysandratos, K., Herriges, M. J., & Kotton, D. N. (2020) · Annual Review of Physiology · doi:10.1146/annurev-physiol-041520-092904 · Cited by 114 · see citing works
Little, D. R., Lynch, A. M., Yan, Y., Akiyama, H., Kimura, S., & Chen, J. (2021) · Nature Communications · doi:10.1038/s41467-021-22817-6 · Cited by 105 · see citing works
Regeneration of the lung: Lung stem cells and the development of lung mimicking devices
Schilders, K. A. A., Eenjes, E., van Riet, S., Poot, A. A., Stamatialis, D. F., Truckenmüller, R. K., Hiemstra, P. S., & Rottier, R. J. (2016) · Respiratory Research · doi:10.1186/s12931-016-0358-z · Cited by 102 · see citing works
Transcriptional control of lung alveolar type 1 cell development and maintenance by NK homeobox 2-1
Little, D. R., Gerner-Mauro, K. N., Flodby, P., Crandall, E. D., Borok, Z., Akiyama, H., Kimura, S., Ostrin, E. J., & Chen, J. (2019) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1906663116 · Cited by 94 · see citing works
Jansing, N. L., McClendon, J. D., Henson, P. M., Tuder, R. M., Hyde, D. M., & Zemans, R. L. (2017) · American Journal of Respiratory Cell and Molecular Biology · doi:10.1165/rcmb.2017-0037ma · Cited by 91 · see citing works
Hippo and TGF-β interplay in the lung field
Saito, A., & Nagase, T. (2015) · American Journal of Physiology-Lung Cellular and Molecular Physiology · doi:10.1152/ajplung.00238.2015 · Cited by 92 · see citing works
Cellular plasticity: 1712 to the present day
Tata, P. R., & Rajagopal, J. (2016) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2016.07.005 · Cited by 93 · see citing works
Stem cells and lung regeneration
Parekh, K. R., Nawroth, J. C., Pai, A. C., Busch, S. M., Senger, C. N., & Ryan, A. L. (2020) · American Journal of Physiology-Cell Physiology · doi:10.1152/ajpcell.00036.2020 · Cited by 94 · see citing works
Potential contribution of alveolar epithelial type I cells to pulmonary fibrosis
Kasper, M. E., & Barth, K. (2017) · Bioscience Reports · doi:10.1042/bsr20171301 · Cited by 89 · see citing works
Lung regeneration: a tale of mice and men
Basil, M. C., & Morrisey, E. E. (2019) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2019.11.006 · Cited by 87 · see citing works
Generation of human alveolar epithelial type I cells from pluripotent stem cells
Burgess, C. L., Huang, J., Bawa, P., Alysandratos, K., Minakin, K., Ayers, L. J., Morley, M. P., Babu, A., Villacorta-Martín, C., Yampolskaya, M., et al. (2024) · Cell stem cell · doi:10.1016/j.stem.2024.03.017 · Cited by 86 · see citing works
Vascular Niche in Lung Alveolar Development, Homeostasis, and Regeneration
Mammoto, A., & Mammoto, T. (2019) · Frontiers in Bioengineering and Biotechnology · doi:10.3389/fbioe.2019.00318 · Cited by 85 · see citing works
Endale, M., Ahlfeld, S. K., Bao, E. L., Chen, X., Green, J., Bess, Z., Weirauch, M. T., Xu, Y. J., & Perl, A. T. (2017) · Developmental Biology · doi:10.1016/j.ydbio.2017.03.020 · Cited by 82 · see citing works
Repair and regeneration of the alveolar epithelium in lung injury
Wang, Y., Wang, L., Ma, S., Cheng, L. C., & Yu, G. (2024) · The FASEB Journal · doi:10.1096/fj.202400088r · Cited by 81 · see citing works
Clair, G., Piehowski, P., Nicola, T., Kitzmiller, J. A., Huang, E. L., Zink, E., Sontag, R. L., Orton, D., Moore, R., Carson, J. P., et al. (2016) · Scientific Reports · doi:10.1038/srep39223 · Cited by 77 · see citing works
Stem cells in tissues, organoids, and cancers
Wang, X. (2019) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-019-03199-x · Cited by 77 · see citing works
Advances in development and application of human organoids
Shankaran, A., Prasad, K., Chaudhari, S., Brand, A. M., & Satyamoorthy, K. (2021) · 3 Biotech · doi:10.1007/s13205-021-02815-7 · Cited by 74 · see citing works
Regeneration of the Aging Lung: A Mini-Review
Navarro, S., & Driscoll, B. (2016) · Gerontology · doi:10.1159/000451081 · Cited by 74 · see citing works
Pan, H., Deutsch, G. H., Wert, S. E., Subcommittee, O. B. O. T. O., Ambalavanan, N., Ansong, C., Ardini-Poleske, M. E., Bagwell, J., Chan, C., Deutsch, G. H., et al. (2019) · Journal of Biomedical Semantics · doi:10.1186/s13326-019-0209-1 · Cited by 73 · see citing works
Organoid technology in cancer precision medicine
Xia, X., Li, F., He, J., Aji, R., & Gao, D. (2019) · Cancer Letters · doi:10.1016/j.canlet.2019.04.039 · Cited by 72 · see citing works
Lung organoids, useful tools for investigating epithelial repair after lung injury
Kong, J., Wen, S., Cao, W., Yue, P., Xu, X., Zhang, Y., Luo, L., Chen, T., Li, L., Wang, F., et al. (2021) · Stem Cell Research & Therapy · doi:10.1186/s13287-021-02172-5 · Cited by 72 · see citing works
Self-citationUnderstanding alveolarization to induce lung regeneration
Rodríguez‐Castillo, J. A., Pérez-Bravo, D., Ntokou, A., Seeger, W., Morty, R. E., & Ahlbrecht, K. (2018) · Respiratory Research · doi:10.1186/s12931-018-0837-5 · Cited by 69 · see citing works
Pathophysiology and therapeutic potential of cardiac fibrosis
Hara, H., Takeda, N., & Komuro, I. (2017) · Inflammation and Regeneration · doi:10.1186/s41232-017-0046-5 · Cited by 67 · see citing works
Self-citationOrganoids as a Powerful Model for Respiratory Diseases
Li, Y., Wu, Q., Sun, X., Shen, J., & Chen, H. (2020) · Stem Cells International · doi:10.1155/2020/5847876 · Cited by 66 · see citing works
WNT Signaling in Lung Repair and Regeneration.
Raslan, A., & Yoon, J. K. (2020) · PubMed Central · doi:10.14348/molcells.2020.0059 · Cited by 63 · see citing works
Lung repair and regeneration: Advanced models and insights into human disease
Basil, M. C., Alysandratos, K., Kotton, D. N., & Morrisey, E. E. (2024) · Cell stem cell · doi:10.1016/j.stem.2024.02.009 · Cited by 64 · see citing works
Mesenchymal WNT-5A/5B Signaling Represses Lung Alveolar Epithelial Progenitors
Wu, X., van Dijk, E. M., Ng-Blichfeldt, J.-P., Bos, I. S. T., Ciminieri, C., Königshoff, M., Kistemaker, L. E. M., & Gosens, R. (2019) · Cells · doi:10.3390/cells8101147 · Cited by 62 · see citing works
Advances in Small-Cell Lung Cancer (SCLC) Translational ResearchPreprint
Drapkin, B. J., & Rudin, C. M. (2020) · Cold Spring Harbor Perspectives in Medicine · doi:10.1101/cshperspect.a038240 · Cited by 61 · see citing works
Targeting Alveolar Repair in Idiopathic Pulmonary Fibrosis
Ptasinski, V., Stegmayr, J., Belvisi, M. G., Wagner, D. E., & Murray, L. A. (2021) · American Journal of Respiratory Cell and Molecular Biology · doi:10.1165/rcmb.2020-0476tr · Cited by 59 · see citing works
The Challenge of Long-Term Cultivation of Human Precision-Cut Lung Slices
Preuß, E. B., Schubert, S., Werlein, C., Stark, H., Braubach, P., Höfer, A., Plucinski, E. K., Shah, H., Geffers, R., Sewald, K., et al. (2021) · American Journal Of Pathology · doi:10.1016/j.ajpath.2021.10.020 · Cited by 59 · see citing works
Cell Cross-Talk in Alveolar Microenvironment: From Lung Injury to Fibrosis
Song, L., Li, K., Chen, H., & Xie, L. (2024) · American Journal of Respiratory Cell and Molecular Biology · doi:10.1165/rcmb.2023-0426tr · Cited by 58 · see citing works
Transcriptional characterisation of human lung cells identifies novel mesenchymal lineage markers
Danopoulos, S., Bhattacharya, S., Mariani, T. J., & Alam, D. A. (2019) · European Respiratory Journal · doi:10.1183/13993003.00746-2019 · Cited by 58 · see citing works
SARS-CoV-2 Infection and Lung Regeneration
Zhao, F., Ma, Q., Yue, Q., & Chen, H. (2022) · Clinical Microbiology Reviews · doi:10.1128/cmr.00188-21 · Cited by 57 · see citing works
Mutze, K., Vierkotten, S., Milošević, J., Eickelberg, O., & Königshoff, M. (2015) · Disease Models & Mechanisms · doi:10.1242/dmm.019117 · Cited by 57 · see citing works
Stem Cells in Lung Injury and Repair
Chen, F. F., & Fine, A. (2016) · American Journal Of Pathology · doi:10.1016/j.ajpath.2016.05.023 · Cited by 57 · see citing works
Lung development and emerging roles for type 2 immunity
Loering, S., Cameron, G. J. M., Starkey, M. R., & Hansbro, P. M. (2018) · The Journal of Pathology · doi:10.1002/path.5211 · Cited by 54 · see citing works
Niche Cells and Signals that Regulate Lung Alveolar Stem Cells In VivoPreprint
Juul, N. H., Stockman, C. A., & Desai, T. (2020) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a035717 · Cited by 55 · see citing works
Modulating Cell Fate as a Therapeutic Strategy
Lin, B., Srikanth, P., Castle, A. C., Nigwekar, S. U., Malhotra, R. K., Galloway, J. L., Sykes, D. B., & Rajagopal, J. (2018) · Cell stem cell · doi:10.1016/j.stem.2018.05.009 · Cited by 50 · see citing works
Kiener, M., Roldán, N., Machahua, C., Sengupta, A., Geiser, T., Guenat, O. T., Funke-Chambour, M., Hobi, N., & Julio, M. K. (2021) · Frontiers in Medicine · doi:10.3389/fmed.2021.644678 · Cited by 52 · see citing works
Alysandratos, K., Garcia-de-Alba, C., Yao, C., Pessina, P., Huang, J., Villacorta-Martín, C., Hix, O. T., Minakin, K., Burgess, C. L., Bawa, P., et al. (2022) · JCI Insight · doi:10.1172/jci.insight.158937 · Cited by 52 · see citing works
Tóth, A., Kannan, P. S., Snowball, J. M., Kofron, M. J., Wayman, J. A., Bridges, J. P., Miraldi, E. R., Swarr, D. T., & Zacharias, W. J. (2023) · Nature Communications · doi:10.1038/s41467-023-44184-0 · Cited by 53 · see citing works
Liebler, J. M., Marconett, C. N., Juul, N. H., Wang, H., Liu, Y., Flodby, P., Laird‐Offringa, I. A., Minoo, P., & Zhou, B. (2015) · American Journal of Physiology-Lung Cellular and Molecular Physiology · doi:10.1152/ajplung.00337.2015 · Cited by 52 · see citing works
Weeden, C. E., Chen, Y., Ma, S. B., Hu, Y., Ramm, G., Sutherland, K. D., Smyth, G. K., & Asselin-Labat, M.-L. (2017) · PLoS Biology · doi:10.1371/journal.pbio.2000731 · Cited by 52 · see citing works
Kanagaki, S., Ikeo, S., Suezawa, T., Yamamoto, Y., Seki, M., Hirai, T., Hagiwara, M., Suzuki, Y., & Gotoh, S. (2020) · Stem Cells · doi:10.1002/stem.3302 · Cited by 52 · see citing works
Distal lung epithelial progenitor cell function declines with age
Watson, J. K., Sanders, P. N., Dunmore, R., Rosignoli, G., Julé, Y., Rawlins, E. L., Mustelin, T., May, R. D., Clarke, D. L., & Finch, D. K. (2020) · Scientific Reports · doi:10.1038/s41598-020-66966-y · Cited by 51 · see citing works
Hagan, A. S., Zhang, B., & Ornitz, D. M. (2019) · Development · doi:10.1242/dev.181032 · Cited by 49 · see citing works
Platform Effects on Regeneration by Pulmonary Basal Cells as Evaluated by Single-Cell RNA Sequencing
Greaney, A. M., Adams, T. S., Raredon, M. S. B., Gubbins, E., Schupp, J. C., Engler, A. J., Ghaedi, M., Yuan, Y., Kaminski, N., & Niklason, L. E. (2020) · Cell Reports · doi:10.1016/j.celrep.2020.03.004 · Cited by 49 · see citing works
Wagner, D. E., Cardoso, W. V., Gilpin, S. E., Majka, S. M., Ott, H. C., Randell, S. H., Thébaud, B., Waddell, T. K., & Weiss, D. J. (2016) · Annals of the American Thoracic Society · doi:10.1513/annalsats.201606-466st · Cited by 47 · see citing works
Plasma membrane wounding and repair in pulmonary diseases
Cong, X., Hubmayr, R. D., Li, C., & Zhao, X. (2017) · American Journal of Physiology-Lung Cellular and Molecular Physiology · doi:10.1152/ajplung.00486.2016 · Cited by 48 · see citing works
Ota, C., Ng-Blichfeldt, J.-P., Korfei, M., Alsafadi, H. N., Lehmann, M., Skrońska-Wąsek, W., Santis, M. M. D., Günther, A., Wagner, D. E., & Königshoff, M. (2018) · Scientific Reports · doi:10.1038/s41598-018-31214-x · Cited by 49 · see citing works
Organoid models: assessing lung cell fate decisions and disease responses
Liberti, D. C., & Morrisey, E. E. (2021) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2021.09.008 · Cited by 45 · see citing works
Weiner, A. I., Zhao, G., Zayas, H. M., Holcomb, N. P., Adams‐Tzivelekidis, S., Wong, J., Gentile, M. E., Reddy, D., Wei, J., Palashikar, G., et al. (2022) · Cell Reports · doi:10.1016/j.celrep.2022.111805 · Cited by 47 · see citing works
Lin, C., Hsu, Y.-C., Li, Y.-H., Kuo, Y., Hou, H., Lan, K.-H., Chen, T., Tzeng, Y.-S., Kuo, Y.-Y., Kao, C., et al. (2017) · Haematologica · doi:10.3324/haematol.2016.161257 · Cited by 45 · see citing works
Stem cells in pulmonary alveolar regeneration
Wu, H., & Tang, N. (2021) · Development · doi:10.1242/dev.193458 · Cited by 43 · see citing works
- Authors
- Jain, R., Barkauskas, C. E., Takeda, N., Bowie, E. J., Aghajanian, H., Wang, Q., Padmanabhan, A., Manderfield, L. J., Gupta, M., Li, D., Li, L., Trivedi, C. M., Hogan, B. L. M., & Epstein, J. A.
- Affiliations
- University of Pennsylvania (US)
- Duke University (US)
- Corresponding author
- Hogan, Brigid L. M.
- Epstein, Jonathan A.
- ORCID
- Venue
- Nature Communications
- Published
- 2015-04-13
- Volume
- 6
- Issue
- 1
- Pages
- 6727-6727
- ISSN
- 2041-1723 (ISSN-L)
- PMC
- PMC4396689
- OpenAlex
- W2076684565
- Cited by
- 303
- References
- 39
- Citations by year
- 2026: 12 · 2025: 16 · 2024: 24 · 2023: 35 · 2022: 32 · 2021: 38 · 2020: 30 · 2019: 29 · 2018: 26 · 2017: 30 · 2016: 22 · 2015: 8 · 2014: 1
- FWCI
- 22.70
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Nature Communications (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- Funders
- University of Pennsylvania
- Cotswold Foundation
- National Institutes of Health
- Japan Society for the Promotion of Science (15K09132)
- National Heart, Lung, and Blood Institute (K08HL122521, R01HL071546, U01HL100405, U01HL110967, U01HL111018, K08HL119553, UO1HL110967, UO1HL111018, U01HL110942)
- Eunice Kennedy Shriver National Institute of Child Health and Human Development (T32HD040372)
- Topics
- Health Sciences › Medicine › Pulmonary and Respiratory Medicine › Neonatal Respiratory Health Research
- Health Sciences › Medicine › Hepatology › Liver physiology and pathology
- Health Sciences › Medicine › Surgery › Transplantation: Methods and Outcomes
- Keywords
- HOPX, alveolar type I cells, alveolar type II cells, cellular plasticity, lung regeneration, alveolar epithelial cells, TGF-beta signaling, lung organoids, partial pneumonectomy, lung stem cells, lineage relationships, self-renewal, surfactants
- MeSH terms
- Animals, Cell Differentiation, Clone Cells, Crosses, Genetic, Epithelial Cells, Humans, Male, Mice, Transgenic, Pneumonectomy, Pulmonary Alveoli, Regeneration, Tamoxifen, Signal Transduction, Gene Expression, Transforming Growth Factor beta, Genes, Reporter, Homeodomain Proteins, Cell Culture Techniques, Cell Lineage, Cell Proliferation, Green Fluorescent Proteins, Mice, Cell Tracking
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