Single-allele analysis of transcription kinetics in living mammalian cells

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Transcription Dynamics

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Mammalian genes are transcribed with widely different bursting kinetics

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Transcription goes digital

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Cellular Levels of Signaling Factors Are Sensed by β-actin Alleles to Modulate Transcriptional Pulse Intensity

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Live Imaging of mRNA Synthesis in Drosophila

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Post‐Transcriptional Noise Control

Hansen, M. M. K., & Weinberger, L. S. (2019) · BioEssays · doi:10.1002/bies.201900044 · Cited by 17 · see citing works

Regulation of RNA polymerase II transcription through re-initiation and bursting

Nagel, M., & Taatjes, D. J. (2025) · Molecular Cell · doi:10.1016/j.molcel.2025.04.011 · Cited by 17 · see citing works

Transcriptional bursting in Drosophila development: Stochastic dynamics of eve stripe 2 expression

Holloway, D. M., & Spirov, A. V. (2017) · PLoS ONE · doi:10.1371/journal.pone.0176228 · Cited by 16 · see citing works

Dealing with Gene-Dosage Imbalance during S Phase

Bar‐Ziv, R., Voichek, Y., & Barkai, N. (2016) · Trends in Genetics · doi:10.1016/j.tig.2016.08.006 · Cited by 17 · see citing works

Lighting up the central dogma for predictive developmental biology

García, H. G., Berrocal, A., Kim, Y. J., Martini, G. D., & Zhao, J. (2019) · Current topics in developmental biology/Current Topics in Developmental Biology · doi:10.1016/bs.ctdb.2019.10.010 · Cited by 19 · see citing works

Nuclear Physics: Quantitative Single-Cell Approaches to Nuclear Organization and Gene ExpressionPreprint

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Detection of mRNA of the Cyclin D1 Breast Cancer Marker by a Novel Duplex-DNA Probe

Segal, M., Yavin, E., Kafri, P., Shav‐Tal, Y., & Fischer, B. (2013) · Journal of Medicinal Chemistry · doi:10.1021/jm301838y · Cited by 16 · see citing works

Transition probability in cell proliferation, stochasticity in cell differentiation, and the restriction point of the cell cycle in one package

Golubev, A. G. (2012) · Progress in Biophysics and Molecular Biology · doi:10.1016/j.pbiomolbio.2012.05.002 · Cited by 16 · see citing works

The dynamic pathway of nuclear RNA in eukaryotes

Sheinberger, J., & Shav‐Tal, Y. (2013) · Nucleus · doi:10.4161/nucl.24434 · Cited by 16 · see citing works

Dynamic Encounters of Genes and Transcripts with the Nuclear Pore

Ben-Yishay, R., Ashkenazy-Titelman, A., & Shav‐Tal, Y. (2016) · Trends in Genetics · doi:10.1016/j.tig.2016.04.003 · Cited by 16 · see citing works

Dynamic imaging demonstrates that pulsed electromagnetic fields (PEMF) suppress IL‐6 transcription in bovine nucleus pulposus cells

Tang, X., Alliston, T. N., Coughlin, D., Miller, S., Zhang, N., Waldorff, E. I., Ryaby, J. T., & Lotz, J. C. (2017) · Journal of Orthopaedic Research® · doi:10.1002/jor.23713 · Cited by 16 · see citing works

Distribution of Initiation Times Reveals Mechanisms of Transcriptional Regulation in Single Cells

Choubey, S., Kondev, J., & Sánchez, Á. (2018) · Biophysical Journal · doi:10.1016/j.bpj.2018.03.031 · Cited by 14 · see citing works

Cytoplasmic DNA can be detected by RNA fluorescence in situ hybridization

Greenberg, E., Hochberg-Laufer, H., Blanga, S., Kinor, N., & Shav‐Tal, Y. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz645 · Cited by 11 · see citing works

Exact distributions for stochastic models of gene expression with arbitrary regulation

Wang, Z., Zhang, Z., & Zhou, T. (2019) · Science China Mathematics · doi:10.1007/s11425-019-1622-8 · Cited by 13 · see citing works

Genes at work in random bouts

Golubev, A. G. (2012) · BioEssays · doi:10.1002/bies.201100119 · Cited by 12 · see citing works

Chromatin decondensation is accompanied by a transient increase in transcriptional output

Hausnerová, V. V., & Lanctôt, C. (2016) · Biology of the Cell · doi:10.1111/boc.201600032 · Cited by 12 · see citing works

Quantifying the transcriptional output of single alleles in single living mammalian cells

Yunger, S., Rosenfeld, L., Garini, Y., & Shav‐Tal, Y. (2013) · Nature Protocols · doi:10.1038/nprot.2013.008 · Cited by 32 · see citing works

Single-cell analysis of transcription kinetics across the cell cycle

Skinner, S. O., Xu, H., Nagarkar-Jaiswal, S., Freire, P. R., Zwaka, T. P., & Golding, I. (2016) · eLife · doi:10.7554/elife.12175 · Cited by 151 · see citing works

Time-resolved analysis of transcription kinetics in single live mammalian cells

Choi, H., Lee, B. H., & Park, H. Y. (2022) · Frontiers in Physics · doi:10.3389/fphy.2022.977125 · Cited by 6 · see citing works

Measuring Transcription Dynamics of Individual Genes Inside Living Cells

Brouwer, I., de Kort, M. A. C., & Lenstra, T. L. (2023) · Methods in molecular biology · doi:10.1007/978-1-0716-3377-9_12 · Cited by 4 · see citing works

Measuring Transcription Dynamics in Living Cells Using Fluctuation Analysis

Ferguson, M., & Larson, D. R. (2013) · Methods in molecular biology · doi:10.1007/978-1-62703-526-2_4 · Cited by 32 · see citing works