Principles for applying optogenetic tools derived from direct comparative analysis of microbial opsins

Mattis, Joanna, Tye, Kay M, Ferenczi, Emily A, Ramakrishnan, Charu, O'Shea, Daniel J, Prakash, Rohit, Gunaydin, Lisa A, Hyun, Minsuk +4 more·2012·Nature Methods

Cited by (778)

Items 301–400 of 778

  1. Activity-dependent expression of Channelrhodopsin at neuronal synapses
    Francesco Gobbo, Laura Marchetti, Ajesh Jacob, Bruno Pinto, Noemi Binini, Federico Pecoraro Bisogni, Claudia Alia, Stefano Luin, Matteo Caleo, Tommaso Fellin et al. · 2017 · Nature Communications
  2. Development of an optogenetic toolkit for neural circuit dissection in squirrel monkeys
    Daniel J. O’Shea, Paul S. A. Kalanithi, Emily Ferenczi, Brian Hsueh, Chandramouli Chandrasekaran, Werapong Goo, Ilka Diester, Charu Ramakrishnan, Matthew Tyler Kaufman, Stephen I. Ryu et al. · 2018 · Scientific Reports
  3. Advancements in the Quest to Map, Monitor, and Manipulate Neural Circuitry
    Jessica Swanson, Pey-Shyuan Chin, Juan M. Romero, Snigdha Srivastava, Joshua Ortiz‐Guzman, Patrick J. Hunt, Benjamin Russell Arenkiel · 2022 · Frontiers in Neural Circuits
  4. Optogenetic Approaches for Controlling Seizure Activity
    Jack K. Tung, Ken Berglund, Robert E. Gross · 2016 · Brain stimulation
  5. Entorhinohippocampal cholecystokinin modulates spatial learning by facilitating neuroplasticity of hippocampal CA3-CA1 synapses
    Junfeng Su, Fengwen Huang, Tian Yu, Ran Tian, Gao Qianqian, Stephen Temitayo Bello, Dingxaun Zeng, Peter Jendrichovsky, C. Geoffrey Lau, Wenjun Xiong et al. · 2023 · Cell Reports
  6. Photostimulation for In Vitro Optogenetics with High‐Power Blue Organic Light‐Emitting Diodes
    Andrew Morton, Caroline Murawski, Yali Deng, Changmin Keum, Gareth Brian Miles, Javier Ananda Tello, Malte C. Gather · 2019 · Advanced Biosystems
  7. Cell and tissue manipulation with ultrashort infrared laser pulses in light-sheet microscopy
    Gustavo de Medeiros, Dimitri Kromm, Bálint Balázs, Nils Norlin, Stefan Günther, Emiliano Izquierdo, Paolo Ronchi, Shinya Komoto, Uroš Kržič, Yannick Schwab et al. · 2020 · Scientific Reports
  8. Resonance Raman Study of an Anion Channelrhodopsin: Effects of Mutations near the Retinylidene Schiff Base
    Adrian Yi, Natalia V. Mamaeva, Hai Li, John L. Spudich, Kenneth J. Rothschild · 2016 · Biochemistry
  9. Advances in Engineering and Application of Optogenetic Indicators for Neuroscience
    Kiryl D. Piatkevich, Mitchell H. Murdock, Fedor V. Subach · 2019 · Applied Sciences
  10. Distinctiveness and continuity in transcriptome and connectivity in the anterior-posterior axis of the paraventricular nucleus of the thalamus
    Yasuyuki Shima, Henrik Skibbe, Yohei Sasagawa, Noriko Fujimori, Yoshimi Iwayama, Ayako Isomura-Matoba, Minoru Yano, Takumi Ichikawa, Itoshi Nikaido, Nobutaka Hattori et al. · 2023 · Cell Reports
  11. Cardiac optogenetics: a novel approach to cardiovascular disease therapy
    Chan Jiang, Hai Tao Li, Yong Ming Zhou, Xi Wang, Long Wang, Zi Qiang Liu · 2017 · EP Europace
  12. Evolution of optogenetic microdevices
    Rajas P. Kale, Abbas Z. Kouzani, Ken R. Walder, Michael Berk, Susannah J. Tye · 2015 · Neurophotonics
  13. A chemist and biologist talk to each other about caged neurotransmitters
    Graham C. R. Ellis‐Davies · 2013 · Beilstein Journal of Organic Chemistry
  14. Driving and regulating temporal association learning coordinated by entorhinal-hippocampal network
    貴司 北村 · 2017 · Neuroscience Research
  15. Ketamine rescues anhedonia by cell-type- and input-specific adaptations in the nucleus accumbens
    Federica Lucantonio, Jacob Roeglin, Shuwen Li, Jaden Lu, Aleesha Shi, Katherine Czerpaniak, Francesca Romana Fiocchi, Leonardo Bontempi, Brenda C. Shields, Carlos A. Zarate et al. · 2025 · Neuron
  16. Modified toolbox for optogenetics in the nonhuman primate
    Ji Dai, Ilker Ozden, Daniel I. Brooks, Fabien B. Wagner, Travis May, Naubahar Shahryar Agha, Benjamin R. Brush, David A. Borton, Arto V Nurmikko, David L. Sheinberg · 2015 · Neurophotonics
  17. How Might Novel Technologies Such as Optogenetics Lead to Better Treatments in Epilepsy?
    Esther I. Krook-Magnuson, Marco Ledri, Iván Soltész, Mérab Kokaia · 2014 · Advances in experimental medicine and biology
  18. Optogenetic control of astrocytes: Is it possible to treat astrocyte-related epilepsy?
    Zhi-Gang Ji, Hongxia Wang · 2014 · Brain Research Bulletin
  19. Nano functional neural interfaces
    Yongchen Wang, Hanlin Zhu, Huiran Yang, Aaron D. Argall, Lan Luan, Chong Xie, Liang Guo · 2018 · Nano Research
  20. The Dorsal Raphe Regulates the Duration of Attack through the Medial Orbitofrontal Cortex and Medial Amygdala
    Jacob C. Nordman, Zheng Li · 2020 · eNeuro
  21. Direct optogenetic stimulation of smooth muscle cells to control gastric contractility
    Markus Vogt, Benjamin Schulz, Ahmed Wagdi, Jan Lebert, Gijsbert J. van Belle, Jan Christoph, Tobias Bruegmann, Robert Patejdl · 2021 · Theranostics
  22. Cardiac optogenetics
    Oscar John Abilez · 2012 · Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)
  23. Overview on Research and Clinical Applications of Optogenetics
    Chris L. Towne, Kimberly R. Thompson · 2016 · Current Protocols in Pharmacology
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  26. Towards the clinical translation of optogenetic skeletal muscle stimulation
    Lili A. Gundelach, Marc A. Hüser, Dirk Beutner, Patrick Ruther, Tobias Bruegmann · 2020 · Pflügers Archiv - European Journal of Physiology
  27. Non-invasive red-light optogenetic control of Drosophila cardiac function
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  28. Estrous Cycle Plasticity in the Central Clock Output to Kisspeptin Neurons: Implications for the Preovulatory Surge
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  29. Single-pulse stimulation of cerebellar nuclei stops epileptic thalamic activity
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  30. The role of optogenetic stimulations of parvalbumin-positive interneurons in the prefrontal cortex and the ventral hippocampus on an acute MK-801 model of schizophrenia-like cognitive inflexibility
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  31. Upregulation of breathing rate during running exercise by central locomotor circuits in mice
    Coralie Hérent, Séverine Diem, Giovanni Usseglio, Gilles Fortin, Julien Bouvier · 2023 · Nature Communications
  32. Optogenetic stimulation of the cochlea—A review of mechanisms, measurements, and first models
    Robin S. Weiss, Andrej Voss, Werner Hemmert · 2016 · Network Computation in Neural Systems
  33. Theoretical optimization of high-frequency optogenetic spiking of red-shifted very fast-Chrimson-expressing neurons
    Neha Gupta, Himanshu Bansal, Sukhdev Roy · 2019 · Neurophotonics
  34. Optogenetics in the behaving rat: integration of diverse new technologies in a vital animal model
    Kelly A. Zalocusky, Karl A. Deisseroth · 2013 · Optogenetics
  35. Optogenetics in Silicon: A Neural Processor for Predicting Optically Active Neural Networks
    Junwen Luo, Konstantin Nikolić, Benjamin D. Evans, Na Dong, Xiaohan Sun, Péter András, Alex Yakovlev, Patrick A Degenaar · 2016 · IEEE Transactions on Biomedical Circuits and Systems
  36. Using a bistable animal opsin for switchable and scalable optogenetic inhibition of neurons
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    Seong‐Beom Park, Heung‐Yeol Lim, Eunyoung Lee, Seung-Woo Yoo, Hyun-Suk Jung, Eunsoo Lee, Woong Sun, Inah Lee · 2022 · Progress in Neurobiology
  38. A clinically viable approach to restoring visual function using optogenetic gene therapy
    Boyuan Yan, Suresh Viswanáthan, Scott E. Brodie, Wen‐Tao Deng, Kirsten E. Coleman, William W. Hauswirth, Sheila Nirenberg · 2023 · Molecular Therapy — Methods & Clinical Development
  39. All-optical recreation of naturalistic neural activity with a multifunctional transgenic reporter mouse
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  40. Deep brain stimulation alleviates Parkinsonian motor deficits through desynchronizing GABA release in mice
    Zongyi Xu, Wei Duan, Shuyu Yuan, Xiaoxue Zhang, Chong You, Jin‐Tai Yu, Jian Wang, Jia‐Da Li, Suixin Deng, Yousheng Shu · 2025 · Nature Communications
  41. Optogenetic Stimulation of the Auditory Nerve
    Victor H. Hernández, Anna Gehrt, Zhizi Jing, Gerhard Hoch, Marcus Jeschke, Nicola Strenzke, Tobias Moser · 2014 · Journal of Visualized Experiments
  42. High-resolution optogenetics in space and time
    Antonio Fernández‐Ruiz, Azahara Oliva, Hongyu Chang · 2022 · Trends in Neurosciences
  43. Rapid and reversible optogenetic silencing of synaptic transmission by clustering of synaptic vesicles
    Dennis Rentsch, Martin Schneider, Brady D. Goulden, Holger Dill, Jana Fiona Liewald, Sandra Zeiler, Julia Guldan, Yilmaz Arda Ateş, Shigeki Watanabe, ALEXANDER R. GOTTSCHALK · 2022 · Nature Communications
  44. Kinetic Evaluation of Photosensitivity in Bi-Stable Variants of Chimeric Channelrhodopsins
    Shoko Hososhima, Seiichiro Sakai, Toru Ishizuka, Hiromu Yawo · 2015 · PLoS ONE
  45. In vivo Optogenetic Stimulation of the Rodent Central Nervous System
    Michelle M. Sidor, Thomas J. Davidson, Kay M. Tye, Melissa R. Warden, Karl Diesseroth, Colleen A. McClung · 2015 · Journal of Visualized Experiments
  46. Maintaining ocular safety with light exposure, focusing on devices for optogenetic stimulation
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  47. Coherent control of an opsin in living brain tissue
    Kush Paul, Parijat Sengupta, Eugene D. Ark, Haohua Tu, Youbo Zhao, Stephen A. Boppart · 2017 · Nature Physics
  48. Postnatal TrkB ablation in corticolimbic interneurons induces social dominance in male mice
    Shawn Tan, Yixin Xiao, Henry H. Yin, Albert I. Chen, Tuck Wah Soong, Hyunsoo Shawn Je · 2018 · Proceedings of the National Academy of Sciences
  49. Near-infrared light driven tissue-penetrating cardiac optogenetics via upconversion nanoparticles in vivo
    Panpan Rao, Long Wang, Yue Cheng, Xi Wang, Haitao Li, Guoxing Zheng, Zile Li, Chan Jiang, Qing Zhou, Congxin Huang · 2020 · Biomedical Optics Express
  50. Comparison of low-power, high-frequency and temporally precise optogenetic inhibition of spiking in NpHR, eNpHR3.0 and Jaws-expressing neurons
    Himanshu Bansal, Neha Gupta, Sukhdev Roy · 2020 · Biomedical Physics & Engineering Express
  51. Multichannel optogenetics combined with laminar recordings for ultra-controlled neuronal interrogation
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  52. Delivery of continuously-varying stimuli using channelrhodopsin-2
    Tatjana Tchumatchenko, Jonathan P. Newman, Ming‐fai Fong, Steve M. Potter · 2013 · Frontiers in Neural Circuits
  53. Optogenetic methods in drug screening: technologies and applications
    Viviana Agus, Harald Janovjak · 2017 · Current Opinion in Biotechnology
  54. Optogenetic Stimulation of the Basolateral Amygdala Increased Theta-Modulated Gamma Oscillations in the Hippocampus
    Nathan S. Ahlgrim, Joseph R. Manns · 2019 · Frontiers in Behavioral Neuroscience
  55. Probing pain pathways with light
    Feng Wang, Erik Bélanger, Marie-Ève Paquet, Daniel C. Côté, Yves De Koninck · 2016 · Neuroscience
  56. Emerging role of viral vectors for circuit-specific gene interrogation and manipulation in rodent brain
    Erika Sarno, Alfred Jay Robison · 2018 · Pharmacology Biochemistry and Behavior
  57. 3D silicon neural probe with integrated optical fibers for optogenetic modulation
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  59. Deciphering Memory Function with Optogenetics
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  63. Design and Characterization of an Optogenetic System in Pichia pastoris
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