Principles for applying optogenetic tools derived from direct comparative analysis of microbial opsins

Mattis, Joanna, Tye, Kay M, Ferenczi, Emily A, Ramakrishnan, Charu, O'Shea, Daniel J, Prakash, Rohit, Gunaydin, Lisa A, Hyun, Minsuk +4 more·2012·Nature Methods

Cited by (778)

Items 601–700 of 778

  1. Ex Vivo Optogenetic Interrogation of Long-Range Synaptic Transmission and Plasticity from Medial Prefrontal Cortex to Lateral Entorhinal Cortex
    Lisa Kinnavane, Paul James Banks · 2022 · Journal of Visualized Experiments
  2. Glutamatergic neurons from the medial prefrontal cortex to the dorsal raphe nucleus regulate maternal aggression in lactating mice
    Yoshikage Muroi, Toshiaki Ishii · 2022 · Neuroscience Research
  3. Gene Targeting in Neuroendocrinology
    Michael Candlish, Roberto De Angelis, Viktoria Götz, Ulrich Boehm · 2015 · Comprehensive physiology
  4. Quantifying Changes in Pain Sensitivity Using Reproducible Transcutaneous Optogenetic Stimulation in Behaving Mice
    Yu‐Feng Xie, Christopher Dedek, Steven A. Prescott · 2026 · Journal of Neuroscience
  5. Employing Optogenetics in Memory Research
    Limor Regev, Inbal Goshen · 2017 · Neuromethods
  6. Implantable Wireless Neural Interface for Multichannel Neural Recording and Optogenetic Neuromodulation
    Daeho Ryu, Saeyoung Jeon, Yong-Kweon Kim, Sang Beom Jun, Chang‐Hyeon Ji · 2019 · International Conference on Optical MEMS and Nanophotonics
  7. Network-level effects of optogenetic stimulation in a computer model of macaque primary motor cortex
    Cliff C. Kerr, Daniel J. O’Shea, Werapong Goo, Salvador Durá-Bernal, Joseph Thachil Francis, Ilka Diester, Paul S. A. Kalanithi, Karl A. Deisseroth, K.V. Shenoy, William W. Lytton · 2014 · BMC Neuroscience
  8. Current Genetic Techniques in Neural Circuit Control of Feeding and Energy Metabolism
    Qi Wu, Yong Han, Qingchun Tong · 2018 · Advances in experimental medicine and biology
  9. Optogenetics
    Paul S. A. Kalanithi, David Arnold Purger · 2017 · Elsevier eBooks
  10. Optogenetics
    Louisa Lyon · 2013 · Materials and Methods
  11. Bewegungssehen: Zellen, Schaltkreise und Algorithmen
    Giordano Ramos-Traslosheros, Miriam Henning, Marion Silies · 2018 · e-Neuroforum
  12. Innovative device illuminates the horizon of bioelectronic medicines
    Warren M. Grill, Jennifer J. DeBerry · 2019 · Nature Reviews Urology
  13. Novel Organic Light Emitting Diodes for Optogenetic Experiments
    Ankur Shah · 2015 · Arizona State University Library Digital Repository (Arizona State University)
  14. The fasciola cinereum subregion of the hippocampus is important for the acquisition of visual contextual memory
    Seong‐Beom Park, Eunyoung Lee, Heung‐Yeol Lim, Seung-Woo Yoo, Eunsoo Lee, Hyun-Suk Jung, Woong Sun, Inah Lee · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  15. Optogenetic stimulation of the cochlea
    David López de la Morena · 2019
  16. Ionic control of porin permeability in bacteria
    Santiago E. Caño Muñiz, Anja Hagting, Ieuan Evans, Ali F. Alsulami, David Summers, Tom L. Blundell, R. Andrés Floto · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  17. Cryo-EM structure of a blue-shifted channelrhodopsin from Klebsormidium nitens
    Yuzhu Z. Wang, Koki Natsume, Tatsuki Tanaka, Shoko Hososhima, Rintaro Tashiro, Fumiya K. Sano, Hiroaki Akasaka, Satoshi P. Tsunoda, Wataru Shihoya, Hideki Kandori et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  18. Medial prefrontal cortex input to lateral entorhinal cortex supports both encoding and retrieval of associative recognition memory
    Lisa Kinnavane, Gareth RI Barker, Paul James Banks, Zafar Iqbal Bashir, Elizabeth Clea Warburton · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  19. The differential effect of optogenetic serotonergic manipulation on sustained motor actions and waiting for future rewards in mice
    Masakazu Taira, Kayoko W. Miyazaki, Katsuhiko Miyazaki, Jianning Chen, Shiho Okitsu-Sakurayama, Anupama Chaudhary, Mika Nishio, Tsukasa Miyake, Akihiro Yamanaka, Kenji F. Tanaka et al. · 2024 · Frontiers in Neuroscience
  20. Flexible modeling of large-scale neural network stimulation: Electrical and optical extensions to The Virtual Electrode Recording Tool for EXtracellular Potentials (VERTEX)
    Anne F. Pierce, Larry Shupe, Julien Bloch, Eberhard E. Fetz, Azadeh Yazdan-Shahmorad · 2024 · Journal of Neuroscience Methods
  21. Toward biomimetic optogenetics: Drug-free activation of acute opiate reward
    Lyla El-Fayomi, Hendrik W. Steenland, Sabine Lovejoy, Michael Bergamini, Derek van der Kooy · 2025 · iScience
  22. Implantable Light‐Powered Human Designer Cells for Electrical Energy Generation
    Shuai Xue, Zhihua Lin, Debasis Maity, Preetam Guha Ray, Mingqi Xie, Martin Fussenegger · 2025 · Advanced Materials
  23. Developmental embedding of parvalbumin-positive interneurons drives local and crosshemispheric prefrontal gamma synchrony
    Anton Offermanns, Jastyn A. Pöpplau, Ileana L. Hanganu‐Opatz · 2025 · Progress in Neurobiology
  24. Desensitization of opsin responses during all-optical interrogation depends on imaging parameters
    Blake Russell, Robert M. Lees, Armin Lak, Adam M. Packer · 2026 · Neurophotonics
  25. The role of dopamine-sensitive motor cortical circuits in the development and execution of skilled forelimb movements
    Martyna Gorkowska, Gniewosz Drwiȩga, Łukasz Szumiec, Jan M. Rodriguez Parkitna, Przemysław Eligiusz Cieślak · 2026 · iScience
  26. A Stretchable Optogenetic Probe for Wireless Control of Bladder Nociception
    Janghoon Joo, Hannah A. Anderson, Wooseok Kim, Shane H Priester, Bogeun Kim, Firoj Alom, Doyoung Kim, Bhavana Talluri, Hee Kyu Lee, Joohoon Kang et al. · 2026 · Engineering
  27. Substance P regulates Tacr1 neurons, which control nitric oxide–mediated neurovascular coupling in the mouse cortex
    Fernanda Juarez Anaya, Jiwon Kim, Sarah E. Ross, Alberto L. Vazquez · 2026 · Science Advances
  28. Micro-LEDs in biomedicine: from implantable optogenetics to intelligent theranostics
    Yihan Huang, Huaqi Liu, Yun Lin, Junwei Hu, Zou Li, Shula Chen, Ouying Chen, Xiaoyan Yi, Liancheng Wang · 2026 · Journal of Semiconductors
  29. Optogenetic control of arousal neurons
    Antoine Adamantidis, Matthew E. Carter, Luı́s de Lecea · 2013 · Cambridge University Press eBooks
  30. Geneticsof sleep and circadian rhythms
    Paul J. Shaw, Mehdi Tafti, Michael J. Thorpy · 2013 · Cambridge University Press eBooks
  31. Flexible Electronics and Display Technology for Medical, Biological, and Life Science Applications
    Joseph T. Smith · 2014
  32. Optogenetic Approaches to Restoring Intrinsic Visual Processing Features in Retinal Ganglion Cells
    Zhuo‐Hua Pan, Anding Bi, Qi Lu · 2015 · Springer eBooks
  33. Optogenetic Dissection of Sleep-Wake Circuits in the Brain
    Thomas C. Gent, Antoine Adamantidis · 2015 · Springer eBooks
  34. Viral Vector-Based Techniques for Optogenetic Modulation In Vivo
    Mathias Mahn, Shiri Ron, Ofer Yizhar · 2013 · Neuromethods
  35. Acute Optogenetic Modulation of Cardiac Twitch Dynamics Explored Through Modeling
    Yasser Aboelkassem, Stuart G. Campbell · 2016 · Journal of Biomechanical Engineering
  36. Injection of Adeno-Associated Virus Containing Optogenetic and Chemogenetic Probes into the Neonatal Mouse Brain
    Nhan C. Huynh, Baher A. Ibrahim, Christopher M. Lee, Mickeal N. Key, Daniel A. Llano · 2019 · Neuromethods
  37. Why does Impact Factor still have impact?
    David Gibbes Miller · 2013 · Physiology News
  38. Studying Neuronal Function Ex Vivo Using Optogenetic Stimulation and Patch Clamp
    Ayla Aksoy‐Aksel, Julien Genty, Martin Zeller, Ingrid Ehrlich · 2020 · Methods in molecular biology
  39. Optogenetics: Novel Brain Interface Technology That Originates in Bioprospecting
    Ramin Pashaie · 2020 · Springer eBooks
  40. Optogenetics in Complex Model Systems (Non-Human Primate)
    Robijanto Soetedjo, Yoshiko Kojima · 2022 · Neuromethods
  41. KCa1.1 channels contribute to optogenetically driven post-stimulation silencing in cerebellar molecular layer interneurons
    Merouann Kassa, Jonathan Bradley, Abdelali Jalil, Isabel Llano · 2022 · The Journal of General Physiology
  42. Spatial and Temporal Considerations of Optogenetic Tools in an All-Optical Single-Beam Experiment
    Damaris Holder, Matthias Prigge · 2023 · Neuromethods
  43. Characterization of the tail current of Channelrhodopsin-2 variants
    TiShang Zheng, HengQi Wei, Congjian Zhao · 2024 · Biochemistry and Biophysics Reports
  44. Specific parvalbumin-positive optogenetic stimulations in specific brain regions restore navigational flexibility in an acute MK801 mouse model of schizophrenia
    Enrico Patrono, Daniela Černotová, Jan Svoboda, Aleš Stuchlı́k · 2025 · Neuroscience
  45. Optogenetic and Chemogenetic Tools for Drug Discovery in Schizophrenia
    Dennis Kätzel, Dimitri Michael Kullmann · 2015 · Royal Society of Chemistry eBooks
  46. Highly Multiplexed Nanophotonic Probes With Independently Controllable Emitters for Optogenetic Brain Stimulation
    Eran Segev, Laurent C. Moreaux, Jacob Reimer, Trevor M. Fowler, Derrick Chi, Wesley D. Sacher, Maisie Lo, Karl A. Deisseroth, Andreas Savas Tolias, Andrei Faraon et al. · 2016 · Conference on Lasers and Electro-Optics
  47. Optogenetics Research in Behavioral Neuroscience: Insights into the Brain Basis of Reward Learning and Goal-directed Behavior
    Adam C. G. Crego, Stephen E. Chang, William N. Butler, Kyle S. Smith · 2017 · Cambridge University Press eBooks
  48. Neuromodulation Using Optogenetics and Related Technologies
    Nigel P. Pedersen, Robert E. Gross · 2018 · Elsevier eBooks
  49. Optogenetics Dissection of Sleep Circuits and Functions
    Cornelia Schöne, Antoine Adamantidis · 2018 · Elsevier eBooks
  50. Perturbations in the Activity of Cholinergic Interneurons in the Dorsomedial Striatum Impairs the Update of Actions to an Instrumental Contingency Change
    Hector Alatriste-León, Anil K Verma-Rodríguez, Josué O. Ramírez‐Jarquín, Fatuel Tecuapetla · 2019 · Neuroscience
  51. Optogenetics: An update
    Sergey Kasparov, Sam Lane, Anja G. Teschemacher · 2013 · Physiology News
  52. Selecting Channelrhodopsin Constructs for Optimal Visual Restoration in Differing Light Conditions
    Tushar H. Ganjawala, Zhuo‐Hua Pan · 2020 · Methods in molecular biology
  53. Channelrhodopsin-2 Assisted Circuit Mapping in the Spinal Cord Dorsal Horn
    Kelly M. Smith, Brett Anthony Graham · 2022 · Neuromethods
  54. Anatomical and functional characterization of serotonergic neurocircuitry
    Iskra Pollak Dorocic · 2016 · Figshare
  55. Behavioral Phenotyping Using Optogenetic Technology
    Stephen D. Glasgow, Carolina Gutierrez Herrera, Antoine Adamantidis · 2017
  56. Top-down attention: neural pathways in the human and non-human primate examined by electrophysiology, optogenetics and psychophysics
    Janina Hüer · 2019
  57. Obituary: Marianne Fillenz (1924 – 2013)
    John Frederick Stein · 2013 · Physiology News
  58. Optogenetically Induced Spatiotemporal Gamma Oscillations in Visual Cortex
    Arab, Fereshteh, Sareh Rostami, Mohammad Dehghani-Habibabadi, Vahid Salari, Mir-Shahram Safari · 2021 · arXiv (Cornell University)
  59. Brainstem cholinergic modulation of the thalamocortical activity in urethane anesthetized mice
    Y. Audrey Hay · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  60. Bioluminescent Synthetic Cells Communicate with Natural Cells and Self-Activate Light-Responsive Proteins
    Omer Adir, Ravit Abel, Mia R. Albalak, Lucien E. Weiss, Gal Chen, Amit Gruber, Oskar Staufer, Jeny Shklover, Janna Shainsky‐Roitman, Ilia Platzman et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  61. Improved Version of ChETA Promotes Aggression in the Medial Amygdala
    Rongfeng K. Hu, Patrick B. Chen, A. Berndt, David J. Anderson, Weizhe Hong · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  62. Temporal weighting of cortical and subcortical spikes reveals stimulus dependent differences in their contributions to behavior
    Jackson J. Cone, Autumn O. Mitchell, Rachel K. Parker, John H. R. Maunsell · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  63. Integration of distinct cortical inputs to primary and higher order inhibitory cells of the thalamus
    Christian Puzzo, Rosa I. Martinez-Garcia, H Liu, Levi F. Dyson, William O. Gilbert, Scott J. Cruikshank · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  64. WAChRs are excitatory opsins sensitive to indoor lighting
    Amanda J. Tose, Alberto A. Nava, Sara N. McGrath, Alan R. Mardinly, Alexander Naka · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  65. Synaptic activity controls local exposure of an ‘eat-me’ signal via ANO3-ITPR1 signaling
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  66. Dissecting Neural Circuits for Vision in Nonhuman Primates using fMRI-Guided Electrophysiology and Optogenetics
    Shay Ohayon · 2014 · CaltechTHESIS (California Institute of Technology)
  67. Delivery of time-varying stimuli using ChR2
    Tatjana Tchumatchenko, Jonathan P. Newman, Ming‐fai Fong, Steve M. Potter · 2013 · arXiv (Cornell University)
  68. An Optogenetic Brain-machine Interface for Spatiotemporal Neuromodulation
    Ryan Baumgartner · 2014 · UWM Digital Commons (University of Wisconsin–Milwaukee)
  69. Engineering microbial rhodopsins to expand the optogenetic toolkit
    Veena Venkatachalam · 2014 · Digital Access to Scholarship at Harvard (DASH) (Harvard University)
  70. Future focal treatment approaches to epilepsy
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  73. Opto-mechanical control of nerve growth
    Seongjun Park · 2015 · DSpace@MIT (Massachusetts Institute of Technology)
  74. Discovery and Development of Spectrally Diverse Channelrhodopsins (ChR) for Neurobiological Applications
    John Y. Lin, Per Magne Knutsen, Arnaud Muller · 2015 · Biological and medical physics, biomedical engineering
  75. Advancing Fear Memory Research with Optogenetics
    Inbal Goshen, Anat Shapir, Yanir Mor · 2015 · Elsevier eBooks
  76. Optogenetic Control of Heart Muscle
    Emilia G. Entcheva, Ira S. Cohen · 2013 · Elsevier eBooks
  77. Neocortical Circuit Interrogation with Optogenetics
    Lief E. Fenno, Karl A. Deisseroth · 2013 · Neuromethods
  78. Optogenetic Dissection of Neural Circuit Function in Behaving Animals
    Carolina Gutierrez Herrera, Antoine Adamantidis, Feng Zhang, Karl A. Deisseroth, Luı́s de Lecea · 2014 · Neuromethods
  79. 3D Monte Carlo model with direct photon flux recording for optimal optogenetic light delivery
    Younghoon Shin, Dongmok Kim, Jihoon Lee, Hyuk-Sang Kwon · 2017 · Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE
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  83. Tuning for light and more : engineering phototrophy and membrane proteins in Escherichia coli
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  84. Optogenetic Approaches to Investigating Brain Circuits
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