Principles for applying optogenetic tools derived from direct comparative analysis of microbial opsins
Mattis, Joanna, Tye, Kay M, Ferenczi, Emily A, Ramakrishnan, Charu, O'Shea, Daniel J, Prakash, Rohit, Gunaydin, Lisa A, Hyun, Minsuk +4 more·2012·Nature Methods
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Items 401–500 of 778
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- Closed-Loop Systems and In Vitro Neuronal Cultures: Overview and ApplicationsMarta Bisio, Alexey S. Pimashkin, Stefano Buccelli, Jacopo Tessadori, Marianna Semprini, Timothée Levi, Ilaria Colombi, Arseniy Gladkov, Irina Vasilievna Mukhina, Alberto Averna et al. · 2019 · Advances in neurobiology
- Bidirectional modulation of deep cerebellar nuclear cells revealed by optogenetic manipulation of inhibitory inputs from Purkinje cellsVictor Z. Han, Gerhard Magnus, Yang Zhang, Aguan Daniel Wei, Eric E. Turner · 2014 · Neuroscience
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- Genetically targeted chemical assemblyAnqi Zhang, Yuanwen Jiang, Kang Yong Loh, Zhenan Bao, Karl A. Deisseroth · 2023 · Nature Reviews Bioengineering
- CerebraLux: a low-cost, open-source, wireless probe for optogenetic stimulationRobel Dagnew, Yin-Ying Lin, Jerikko Agatep, Michael Cheng, Andrew Jann, Viola Y. Quach, Michelle Monroe, Ganeev Singh, Ani Minasyan, Joshua K. Hakimian et al. · 2017 · Neurophotonics
- Defining the ionic mechanisms of optogenetic control of vascular tone by channelrhodopsin‐2Nils J. G. Rorsman, Chau My Ta, Hannah Garnett, Pawel Swietach, Paolo Tammaro · 2018 · British Journal of Pharmacology
- All-optical crosstalk-free manipulation and readout of Chronos-expressing neuronsNavjeevan S Soor, Peter Quicke, Carmel L. Howe, Kuin Tian Pang, Mark A. A. Neil, Simon R. Schultz, Amanda J. Foust · 2018 · Journal of Physics D Applied Physics
- Temporally‐precise basolateral amygdala activation is required for the formation of taste memories in gustatory cortexElor Arieli, Ron Gerbi, Mark Shein Idelson, Anan Moran · 2020 · The Journal of Physiology
- Theoretical Analysis of Low-power Bidirectional Optogenetic Control of High-frequency Neural Codes with Single Spike ResolutionHimanshu Bansal, Neha Gupta, Sukhdev Roy · 2020 · Neuroscience
- Neurotransmitters, Cell Types, and Circuit Mechanisms of Motor Skill Learning and Clinical ApplicationsWotu Tian, Shengdi Chen · 2021 · Frontiers in Neurology
- Optogenetic Probing and Manipulation of the Calyx-Type Presynaptic Terminal in the Embryonic Chick Ciliary GanglionRyo Egawa, Shoko Hososhima, Xubin Hou, Hidetaka Katow, Toru Ishizuka, Harukazu Nakamura, Hiromu Yawo · 2013 · PLoS ONE
- Optogenetics in preclinical neuroscience and psychiatry research: recent insights and potential applicationsJonathan P. Britt, Ross A. McDevitt, Sean J. Reed · 2014 · Neuropsychiatric Disease and Treatment
- Gene Targeting in NeuroendocrinologyMichael Candlish, Roberto De Angelis, Viktoria Götz, Ulrich Boehm · 2015 · Comprehensive physiology
- Roadmap for direct and indirect translation of optogenetics into discoveries and therapies for humansChristian Lüscher, Valentina Emiliani, Nita A. Farahany, Aryn H. Gittis, Viviana Gradinaru, Katherine A. High, Botond Roska, José‐Alain Sahel, Ofer Yizhar, Hongkui Zeng et al. · 2025 · Nature Neuroscience
- Modified Rhodopsins From Aureobasidium pullulans Excel With Very High Proton-Transport RatesSabine Panzer, Chong Zhang, Tilen Konte, Celine Bräuer, Anne Diemar, Parathy Yogendran, Jing Yu-Strzelczyk, Georg Nagel, Shiqiang Gao, Ulrich Terpitz · 2021 · Frontiers in Molecular Biosciences
- A single motor neuron determines the rhythm of early motor behavior inCionaTaichi Akahoshi, Madoka K. Utsumi, Kouhei Oonuma, Makoto Murakami, Takeo Horie, Takehiro G. Kusakabe, Kotaro Oka, Kohji Hotta · 2021 · Science Advances
- Dynamical regulation of epileptiform discharges caused by abnormal astrocyte function with optogenetic stimulationJinyi Zhao, Ying Yu, Qingyun Wang · 2022 · Chaos Solitons & Fractals
- Optogenetic fMRI reveals therapeutic circuits of subthalamic nucleus deep brain stimulationYuhui Li, Sung‐Ho Lee, Chunxiu Yu, Li‐Ming Hsu, Tzu-Wen W. Wang, Khoa Do, Hyeon‐Joong Kim, Yen‐Yu Ian Shih, Warren M. Grill · 2024 · Brain stimulation
- Thalamic state control of cortical paired-pulse dynamicsClarissa J. Whitmire, Daniel C. Millard, Garrett B. Stanley · 2016 · Journal of Neurophysiology
- Advances and prospects of rhodopsin-based optogenetics in plant researchYang Zhou, Meiqi Ding, Georg Nagel, Kai Robert Konrad, Shiqiang Gao · 2021 · PLANT PHYSIOLOGY
- Label-free purification and characterization of optogenetically engineered cells using optically-induced dielectrophoresisJia Rui Yang, Yanyu Gu, Chuang Zhang, Yuzhao Zhang, Wenfeng Liang, Lina Hao, Ying Zhao, Lianqing Liu, Wenxue Wang · 2022 · Lab on a Chip
- Prefrontal control of superior colliculus modulates innate escape behavior following adversityAmi Ritter, Shlomi Habusha, Lior Givon, Shahaf Edut, Oded Klavir · 2024 · Nature Communications
- When the electricity (and the lights) go out: transient changes in excitabilityEmily Ferenczi, Karl A. Deisseroth · 2012 · Nature Neuroscience
- The road to optogenetics: Microbial rhodopsinsElena G. Govorunova, Larissa A. Koppel · 2016 · Biochemistry (Moscow)
- Light-Driven Chloride Transport Kinetics of HalorhodopsinHasin M. Feroz, Bryan H. Ferlez, Cécile Lefoulon, Tingwei Ren, Carol S. Baker, John P. Gajewski, Daniel J. Lugar, Sandeep B. Gaudana, Peter J. Butler, Jonas Hühn et al. · 2018 · Biophysical Journal
- Technological Challenges in the Development of Optogenetic Closed-Loop Therapy Approaches in Epilepsy and Related Network Disorders of the BrainBram Vandekerckhove, Jeroen Missinne, Kristl E.J. Vonck, Pieter Bauwens, Rik Verplancke, Paul Boon, Robrecht Raedt, Jan Vanfleteren · 2020 · Micromachines
- Probing the Polarity of Spontaneous Perisomatic GABAergic Synaptic Transmission in the Mouse CA3 Circuit in VivoOlivier Dubanet, Arnaldo Ferreira Gomes Da Silva, Andreas Frick, Hajime Hirase, Anna Beyeler, Xavier Leinekugel · 2020 · Cell Reports
- Optogenetic Methods to Investigate Brain Alterations in Preclinical ModelsMarco Brondi, Matteo Bruzzone, Claudia Lodovichi, Marco Dal Maschio · 2022 · Cells
- An Implantable Optogenetic Neuro-Stimulator SoC With Extended Optical Pulse-Width Enabled by Supply-Variation-Immune Cycled Light-Toggling StimulationTayebeh Yousefi, Ksenia Timonina, Georg Zoidl, Hossein Kassiri · 2022 · IEEE Transactions on Biomedical Circuits and Systems
- Motion detection: cells, circuits and algorithmsGiordano Ramos-Traslosheros, Miriam Henning, Marion Silies · 2018 · e-Neuroforum
- POEMS (Polymeric Opto-Electro-Mechanical Systems) for advanced neural interfacesKomal Kampasi, Ian Ladner, Jenny J. Zhou, Alicia Calonico-Soto, Jose E. Hernandez, Susant K. Patra, Razi Haque · 2020 · Materials Letters
- Neuronal Activity at Synapse Resolution: Reporters and Effectors for Synaptic NeuroscienceFrancesco Gobbo, Antonino Cattaneo · 2020 · Frontiers in Molecular Neuroscience
- Nausea-induced suppression of feeding is mediated by central amygdala Dlk1-expressing neuronsWenyu Ding, Helena Weltzien, Christian Peters, Rüdiger Klein · 2024 · Cell Reports
- Optogenetic Brain–Computer InterfacesFeifang Tang, Feiyang Yan, Yushan Zhong, Jinqian Li, Hui Gong, Xiangning Li · 2024 · Bioengineering
- Translational PET applications for brain circuit mapping with transgenic neuromodulation toolsMatthew A. Boehm, Jordi Bonaventura, Juan L. Gomez, Óscar Solís, Elliot A. Stein, Charles W. Bradberry, Michael Michaelides · 2021 · Pharmacology Biochemistry and Behavior
- Plasticity in Prefrontal Cortex Induced by Coordinated Synaptic Transmission Arising from Reuniens/Rhomboid Nuclei and HippocampusPaul James Banks, Elizabeth Clea Warburton, Zafar Iqbal Bashir · 2021 · Cerebral Cortex Communications
- Remote Optogenetics Using Up/Down-Conversion PhosphorsT. Matsubara, Takayuki Yamashita · 2021 · Frontiers in Molecular Biosciences
- Targeted expression of step-function opsins in transgenic rats for optogenetic studiesHiroyuki Igarashi, Keiko Ikeda, Hiroshi Onimaru, Ryosuke Kaneko, Kyo Koizumi, Kaoru Beppu, Kayo Nishizawa, Yukari Takahashi, Fusao Kato, Ko Matsui et al. · 2018 · Scientific Reports
- Optogenetic modulation of cortical neurons using organic light emitting diodes (OLEDs)Arati Sridharan, Ankur Shah, Swathy Sampath Kumar, James Kyeh, Joseph T. Smith, Jennifer Blain Christen, Jit Muthuswamy · 2020 · Biomedical Physics & Engineering Express
- Nonlinear response characteristics of neural networks and single neurons undergoing optogenetic excitationJannik Luboeinski, Tatjana Tchumatchenko · 2020 · Network Neuroscience
- How (not) to silence long-range projections with lightJ. Simon Wiegert, Thomas G. Oertner · 2016 · Nature Neuroscience
- Unsigned temporal difference errors in cortical L5 dendrites during learningGwendolin Schoenfeld, Sepp Kollmorgen, Matthias C. Tsai, Chris Lewis, Shuting Han, Philipp Bethge, Anna Maria Reuss, Adriano Aguzzi, Walter Senn, Valerio Mante et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Prefrontal encoding of an internal model for emotional inferenceXiaowei Gu, Joshua P. Johansen · 2025 · Nature
- Optogenetic modulation of glutamatergic afferents from the ventral subiculum to the nucleus accumbens: Effects on dopamine function, response vigor and locomotor activityDavid Lindenbach, Giada Vacca, Soyon Ahn, Jeremy Keith Seamans, Anthony G. Phillips · 2022 · Behavioural Brain Research
- Optogenetic manipulation of lysosomal physiology and autophagy-dependent clearance of amyloid betaWenping Zeng, Canjun Li, Ruikun Wu, Yang Xingguo, Qingyan Wang, Bingqian Lin, Yanan Wei, Hao Li, Ge Shan, Lili Qu et al. · 2024 · PLoS Biology
- Pharmacogenetic and optical dissection for mechanistic understanding of Parkinson's disease: Potential utilities revealed through behavioural assessmentPuneet Sharma, Ilse Sanet Pienaar · 2014 · Neuroscience & Biobehavioral Reviews
- Enhanced genetically encoded voltage indicators advance their applications in neuroscienceConnor Beck, Diming Zhang, Yiyang Gong · 2019 · Current Opinion in Biomedical Engineering
- Co-expressing fast channelrhodopsin with step-function opsin overcomes spike failure due to photocurrent desensitization in optogenetics: a theoretical studyHimanshu Bansal, Gur Pyari, Sukhdev Roy · 2022 · Journal of Neural Engineering
- In Utero Electroporation for Manipulation of Specific Neuronal PopulationsKotaro Yamashiro, Yuji Ikegaya, Nobuyoshi Matsumoto · 2022 · Membranes
- Prenatal androgen treatment impairs the suprachiasmatic nucleus arginine-vasopressin to kisspeptin neuron circuit in female miceBradley B. Jamieson, Aleisha M. Moore, Dayanara B Lohr, Simone X. Thomas, Lique M. Coolen, Michael N. Lehman, Rebecca E. Campbell, Richard Piet · 2022 · Frontiers in Endocrinology
- Ultra‐low power deep sustained optogenetic excitation of human ventricular cardiomyocytes with red‐shifted opsins: a computational studyGur Pyari, Himanshu Bansal, Sukhdev Roy · 2022 · The Journal of Physiology
- Optogenetic manipulation of ENS - The brain in the gutWei Wang · 2017 · Life Sciences
- Striatal D1 Dopamine Neuronal Population Dynamics in a Rat Model of Levodopa-Induced DyskinesiaShasha Gao, Rui Gao, Lu Yao, Jie Feng, Wanyuan Liu, Yingqiong Zhou, Qiongchi Zhang, Yong Wang, Jian Liu · 2022 · Frontiers in Aging Neuroscience
- Using Optogenetics to Dissect the Neural Circuits Underlying OCD and Related DisordersSean C. Piantadosi, Susanne E. Ahmari · 2015 · Current Treatment Options in Psychiatry
- Selective optogenetic stimulation of fibroblasts enables quantification of hetero-cellular coupling to cardiomyocytes in a three-dimensional model of heart tissueMaximilian Funken, Tobias Bruegmann, Philipp Sasse · 2020 · EP Europace
- Long-term in vivo application of a potassium channel-based optogenetic silencer in the healthy and epileptic mouse hippocampusPiret Kleis, Enya Paschen, Ute Häussler, Yinth Andrea Bernal Sierra, Carola A. Haas · 2022 · BMC Biology
- Perceptual Weighting of V1 Spikes Revealed by Optogenetic White Noise StimulationJulian R. Day-Cooney, Jackson J. Cone, John H. R. Maunsell · 2022 · Journal of Neuroscience
- Medullary tachykinin precursor 1 neurons promote rhythmic breathingJean-Philippe Rousseau, Andreea Furdui, Carolina da Silveira Scarpellini, Richard L. Horner, Gaspard Montandon · 2023 · eLife
- Recent advances and current limitations of available technology to optically manipulate and observe cardiac electrophysiologyGerard A. Marchal, Valentina Biasci, Ping Yan, Chiara Palandri, Marina Campione, Elisabetta Cerbai, Leslie M. Loew, Leonardo Sacconi · 2023 · Pflügers Archiv - European Journal of Physiology
- Optogenetics: Basic Concepts and Their DevelopmentYong Ku Cho, Dan Li · 2016 · Methods in molecular biology
- Molecular Properties and Optogenetic Applications of EnzymerhodopsinsSatoshi P. Tsunoda, Masahiro Sugiura, Hideki Kandori · 2021 · Advances in experimental medicine and biology
- Parallel holographic illumination enables sub-millisecond two-photon optogenetic activation in mouse visual cortex in vivoI-Wen Chen, Emiliano Ronzitti, Brian R. Lee, Tanya L. Daigle, Hongkui Zeng, Eirini I. Papagiakoumou, Valentina Emiliani · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- Optogenetic Control of the Peripheral Nervous SystemRui B. Chang · 2019 · Cold Spring Harbor Perspectives in Medicine
- Ultra-precise all-optical manipulation of neural circuits with multifunctional Cre-dependent transgenic miceHayley A. Bounds, Masato Sadahiro, William D. Hendricks, Marta A. Gajowa, Karthika Gopakumar, Daniel S. Quintana, Bosiljka Tasic, Tanya L. Daigle, Hongkui Zeng, Ian Antón Oldenburg et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
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- Stimulus-dependent differences in cortical versus subcortical contributions to visual detection in miceJackson J. Cone, Autumn O. Mitchell, Rachel K. Parker, John H. R. Maunsell · 2024 · Current Biology
- Multifunctional ultraflexible neural probe for wireless optogenetics and electrophysiologySuhao Wang, Lixuan Li, Shun Zhang, Qianqian Jiang, Pengxian Li, Chengjun Wang, Rui Xiao, Xiaoming Li, Jizhou Song · 2024 · Giant
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- Two eARCHT3.0 Lines for Optogenetic Silencing of Dopaminergic and Serotonergic NeuronsAlexandra Krol, Violeta G. López-Huerta, Taylor E. C. Corey, Karl A. Deisseroth, Jonathan T. Ting, Guoping Feng · 2019 · Frontiers in Neural Circuits
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- Foundry-fabricated dual-color nanophotonic neural probes for photostimulation and electrophysiological recordingDavid A. Roszko, Fu‐Der Chen, John N. Straguzzi, Hannes Wahn, Alec Xu, Blaine McLaughlin, Xinxin Yin, Hongyao Chua, Xianshu Luo, Guo‐Qiang Lo et al. · 2025 · Neurophotonics
- Visible array waveguide gratings for applications of optical neural probesEran Segev, Trevor M. Fowler, Andrei Faraon, Michael Lee Roukes · 2015 · Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE
- The high-light-sensitivity mechanism and optogenetic properties of the bacteriorhodopsin-like channelrhodopsin GtCCR4Tatsuki Tanaka, Shoko Hososhima, Yo Yamashita, Teppei Sugimoto, Toshiki Nakamura, Shunta Shigemura, Wataru Iida, Fumiya K. Sano, Kazumasa Oda, Takayuki Uchihashi et al. · 2024 · Molecular Cell
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