Principles for applying optogenetic tools derived from direct comparative analysis of microbial opsins

Mattis, Joanna, Tye, Kay M, Ferenczi, Emily A, Ramakrishnan, Charu, O'Shea, Daniel J, Prakash, Rohit, Gunaydin, Lisa A, Hyun, Minsuk +4 more·2012·Nature Methods

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  1. Optogenetic Approaches for Controlling Neuronal Activity and Plasticity
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  2. Feasibility of Using Adjunctive Optogenetic Technologies in Cardiomyocyte Phenotyping – from the Single Cell to the Whole Heart
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  3. A Light Wand to Untangle the Myocardial Cell Network
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    Balázs Ördög, Alexander S Teplenin, Tim De Coster, Cindy I. Bart, S O Dekker, Juan Zhang, Dirk L. Ypey, Antoine A.F. de Vries, Daniël A. Pijnappels · 2021 · Frontiers in Physiology
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  6. Gradient descent decomposition of force-field motor primitives optogenetically elicited for motor mapping of the murine lumbosacral spinal cord
    Paola Salmas, 香港中文大学生物医学学院及蔡永业脑神经科学研究所, 香港, 中国, Vincent C. K. Cheung, 中国科学院昆明动物研究所-香港中文大学生物资源与疾病分子机理联合实验室, 香港, 中国 · 2023 · 动物学研究
  7. Dynamic, sex‐ and diet‐specific pleiotropism in the PAC1 receptor‐mediated regulation of arcuate proopiomelanocortin and Neuropeptide Y/Agouti related peptide neuronal excitability by anorexigenic ventromedial nucleus PACAP neurons
    Veronica Mata‐Pacheco, Jennifer Hernandez, Nandini Varma, Jenny Xu, Sarah Sayers, Nikki Le, Edward J. Wagner · 2023 · Journal of Neuroendocrinology
  8. Mechanics of mouse ocular motor plant quantified by optogenetic techniques
    John S. Stahl, Zachary C. Thumser, Paul J. May, Francisco H. Andrade, Sean Anderson, Paul Dean · 2015 · Journal of Neurophysiology
  9. The regulatory mechanism of ion permeation through a channelrhodopsin derived from Mesostigma viride (MvChR1)
    Shota Watanabe, Toru Ishizuka, Shoko Hososhima, Alemeh Zamani, Mohammad Razuanul Hoque, Hiromu Yawo · 2016 · Photochemical & Photobiological Sciences
  10. Kinetic characteristics of chimeric channelrhodopsins implicate the molecular identity involved in desensitization
    Alemeh Zamani, Shigeo Sakuragi, Toru Ishizuka, Hiromu Yawo · 2017 · Biophysics and Physicobiology
  11. Visceral hypersensitivity induced by optogenetic activation of the amygdala in conscious rats
    Anthony C. Johnson, Rocco Latorre, Casey O. Ligon, Beverley Greenwood–Van Meerveld · 2018 · American Journal of Physiology-Gastrointestinal and Liver Physiology
  12. Dual‐Channel Photostimulation for Independent Excitation of Two Populations
    Bryan M. Hooks · 2018 · Current Protocols in Neuroscience
  13. Surgical Procedure for Implantation of Opto‐Array in Nonhuman Primates
    Reza Azadi, Simon Bohn, Mark A. G. Eldridge, Arash Afraz · 2023 · Current Protocols
  14. Considerations for the use of virally delivered genetic tools for in-vivo circuit analysis and behavior in mutant mice: a practical guide to optogenetics
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  15. Entorhinal cortical Island cells regulate temporal association learning with long trace period
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  16. Integrated Bioelectronic and Optogenetic Methods to Study Brain–Body Circuits
    Qiming Zhang, Styra Xicun Wang, Ritchie Chen · 2024 · ACS Nano
  17. Bidirectional optogenetic modulation of peripheral sensory nerve activity: Induction vs. suppression through channelrhodopsin and halorhodopsin
    Akito Kosugi, Moeko Kudo, Ken‐ichi Inoue, Masahiko Takada, Kazuhiko Seki · 2025 · iScience
  18. Minimally invasive upconversion optogenetics for Parkinson's disease treatment
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  19. GLP-2 prevents antipsychotics-induced metabolic dysfunction in mice
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  20. Cryo-EM structure of a blue-shifted channelrhodopsin from Klebsormidium nitens
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  21. Inferring neural circuit properties from optogenetic stimulation
    Michael C. Avery, Jonathan J. Nassi, John H. Reynolds · 2018 · PLoS ONE
  22. Modulation of Cellular Reactivity for Enhanced Cell-Based Biosensing
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  24. Optogenetics: a new method for the causal analysis of neuronal networks in vivo
    Albrecht Stroh, Ilka Diester · 2012 · e-Neuroforum
  25. Intracranial Injection of an Optogenetics Viral Vector Followed by Optical Cannula Implantation for Neural Stimulation in Rat Brain Cortex
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  27. Will Optogenetics Be Used To Treat Chronic Pain Patients?
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  28. Stimulating Neurons with Heterologously Expressed Light-Gated Ion Channels
    J. Simon Wiegert, Christine E. Gee, Thomas G. Oertner · 2017 · Cold Spring Harbor Protocols
  29. Cortical PV interneurons regulate loudness perception and sustainably reverse loudness hypersensitivity
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  30. Optogenetic termination of atrial tachyarrhythmias by brief pulsed light stimulation
    Motoki Nakao, Masaya Watanabe, Lucile Miquerol, Hiroyuki Natsui, Takuya Koizumi, Takahide Kadosaka, Taro Koya, Hikaru Hagiwara, Rui Kamada, Taro Temma et al. · 2023 · Journal of Molecular and Cellular Cardiology
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  32. Optogenetics for light control of biological systems
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  36. Alcohol Cues, Craving, and Relapse: Insights from Animal Models
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  41. Cellular and synaptic specializations for sub-millisecond precision in the mammalian auditory brainstem
    Christian Keine, Bernhard Englitz · 2025 · Frontiers in Cellular Neuroscience
  42. Optogenetics: Pinpoint Light on Precise Neuromodulation
    Jiusi Guo, Kwk Yeung, Chaoqiang Jiang, Liting Duan, Xianglong Han, Wei Qiao · 2025 · IEEE Reviews in Biomedical Engineering
  43. Dynamic nanoscale architecture of synaptic vesicle fusion in mouse hippocampal neurons
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  44. Microbial Rhodopsin Optogenetic Tools: Application for Analyses of Synaptic Transmission and of Neuronal Network Activity in Behavior
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  45. Theoretical analysis of low-power deep synergistic sono-optogenetic excitation of neurons by co-expressing light-sensitive and mechano-sensitive ion-channels
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  47. Quantum and Non-Quantum Formulation of Eye’s Adaptation to Light’s Intensity Increments
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  48. Recent advances in neural mechanism of general anesthesia induced unconsciousness: insights from optogenetics and chemogenetics
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  49. Optogenetics: illuminating the neural bases of rodent behavior
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  52. New Pioneers of Optogenetics in Neuroscience
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  53. Rats can acquire conditional fear of faint light leaking through the acrylic resin used to mount fiber optic cannulas
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  55. Plasticity in prefrontal cortex induced by coordinated nucleus reuniens and hippocampal synaptic transmission
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  56. A Noninvasive Approach to Optogenetics Using Focused Ultrasound Blood Brain Barrier Disruption for the Delivery of Radioluminescent Particles
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  57. Optogenetic and chemogenetic manipulation of seizure threshold in mice
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  61. General Description: Future Prospects of Optogenetics
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  62. Optogenetic Manipulations of Neuronal Network Oscillations: Combination of Optogenetics and Electrophysiological Recordings in Behaving Mice
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  63. Optogenetics: Solving the Enigma of Sleep
    Victor James Drew, Jae Meen Lee, Tae Kim · 2018 · Sleep Medicine Research
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  65. Measuring Membrane Voltage with Microbial Rhodopsins
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  66. Production and Validation of Recombinant Adeno-Associated Virus for Channelrhodopsin Expression in Neurons
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  67. Optogenetic Tools for Control of Neural Activity
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  68. Estimating Neural Background Input with Controlled and Fast Perturbations: A Bandwidth Comparison between Inhibitory Opsins and Neural Circuits
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  69. Optogenetic Control of the Melanin-Concentrating Hormone Expressing Neurons
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  70. Correction: Specific Expression of Channelrhodopsin-2 in Single Neurons of Caenorhabditis elegans
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  82. Attenuation of Hippocampal Evoked Potentials in vivo by Activation of GtACR2, an Optogenetic Chloride Channel
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