Principles for applying optogenetic tools derived from direct comparative analysis of microbial opsins

Mattis, Joanna, Tye, Kay M, Ferenczi, Emily A, Ramakrishnan, Charu, O'Shea, Daniel J, Prakash, Rohit, Gunaydin, Lisa A, Hyun, Minsuk +4 more·2012·Nature Methods

DOI 10.1038/nmeth.1808

Cited by (778)

Items 101–200 of 778

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V. Lorenz, Joachim Heberle · 2013 · Biochimica et Biophysica Acta (BBA) - Bioenergetics
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Takahashi, Aki, Nagayasu, Kazuki, Nishitani, Naoya, Kaneko, Shuji, Koide, Tsuyoshi · 2014 · PLoS ONE
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Jonathan P. Newman, Ming‐fai Fong, Daniel C. Millard, Clarissa J. Whitmire, Garrett B. Stanley, Steve M. Potter · 2015 · eLife
Engineering Approaches to Illuminating Brain Structure and Dynamics
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Bryan M. Hooks, John Y. Lin, Caiying Guo, Karel Svoboda · 2015 · Journal of Neuroscience
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Proulx, Christophe D., Aronson, Sage, Milivojevic, Djordje, Molina, Cris, Loi, Alan, Monk, Bradley, Shabel, Steven J., Malinow, Roberto · 2018 · Proceedings of the National Academy of Sciences
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Yoon Seok Kim, Hideaki E. KATO, Keitaro Yamashita, Shota Ito, Keiichi Inoue, Charu Ramakrishnan, Lief E. Fenno, Kathryn E. Evans, Joseph M. Paggi, Ron O. Dror et al. · 2018 · Nature
Recent advances in patterned photostimulation for optogenetics
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Two-photon brightness of azobenzene photoswitches designed for glutamate receptor optogenetics
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Supramammillary Nucleus Modulates Spike-Time Coordination in the Prefrontal-Thalamo-Hippocampal Circuit during Navigation
Hiroshi Ito, Edvard Ingjald Moser, May‐Britt Moser · 2018 · Neuron
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Nicolas, C., Ju, A., Wu, Y., Eldirdiri, H., Delcasso, S., Couderc, Y., Fornari, C., Mitra, A., Supiot, L., Vérité, A. et al. · 2023 · Nature Communications
Characterization of a Highly Efficient Blue-shifted Channelrhodopsin from the Marine Alga Platymonas subcordiformis
Elena G. Govorunova, Oleg A. Sineshchekov, Hai Li, Roger Janz, John L. Spudich · 2013 · Journal of Biological Chemistry
Saccade Modulation by Optical and Electrical Stimulation in the Macaque Frontal Eye Field
Shay Ohayon, Piercesare Grimaldi, Nicole Schweers, Doris Ying Tsao · 2013 · Journal of Neuroscience
Entorhinal–hippocampal neuronal circuits bridge temporally discontiguous events
Kitamura, Takashi, Macdonald, Christopher J., Tonegawa, Susumu · 2015 · Learning & Memory
Hippocampal Neural Circuits Respond to Optogenetic Pacing of Theta Frequencies by Generating Accelerated Oscillation Frequencies
Zutshi, Ipshita, Brandon, Mark P., Fu, Maylin L., Donegan, Macayla L., Leutgeb, Jill K., Leutgeb, Stefan · 2018 · Current Biology
Selective presynaptic enhancement of the prefrontal cortex to nucleus accumbens pathway by cocaine
Anna Beroun, Brian R. Lee, Yanhua H. Huang, Yan Dong, Oliver M. Schlüter · 2012 · Proceedings of the National Academy of Sciences
Cell type-specific and time-dependent light exposure contribute to silencing in neurons expressing Channelrhodopsin-2
Alexander M. Herman, Longwen Huang, Dona K. Murphey, Isabella Garcia, Benjamin Russell Arenkiel · 2014 · eLife
Control of orienting movements and locomotion by projection-defined subsets of brainstem V2a neurons
Usseglio, Giovanni, Gatier, Edwin, Heuzé, Aurélie, Hérent, Coralie, Bouvier, Julien · 2020 · Current Biology
Optogenetic Activation of Normalization in Alert Macaque Visual Cortex
Jonathan J. Nassi, Michael C. Avery, Ali H. Cetin, Anna Wang Roe, John H. Reynolds · 2015 · Neuron
High-performance microbial opsins for spatially and temporally precise perturbations of large neuronal networks
Savitha Sridharan, Marta A. Gajowa, Mora Belén Ogando, Uday K. Jagadisan, Lamiae Abdeladim, Masato Sadahiro, Hayley A. Bounds, William D. Hendricks, Toby S. Turney, Ian Tayler et al. · 2022 · Neuron
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Yvonne Johansson, Gilad Silberberg · 2020 · Cell Reports
Atomistic design of microbial opsin-based blue-shifted optogenetics tools
Hideaki E. KATO, Motoshi Kamiya, Seiya Sugo, Jumpei Ito, Reiya Taniguchi, Ayaka Orito, Kunio Hirata, Ayumu Inutsuka, Akihiro Yamanaka, Andrés Daniel Maturana et al. · 2015 · Nature Communications
Optogenetic insights into striatal function and behavior
Jeffrey D. Lenz, Mary Kay Lobo · 2013 · Behavioural Brain Research
Optogenetic astrocyte activation evokes BOLD fMRI response with oxygen consumption without neuronal activity modulation
Norio Takata, Yuki Sugiura, Keitaro Yoshida, Miwako Koizumi, Nishida Hiroshi, Kurara Honda, Ryutaro Yano, Yuji Komaki, Ko Matsui, Makoto Suematsu et al. · 2018 · Glia
Patterned photostimulation via visible-wavelength photonic probes for deep brain optogenetics
Eran Segev, Jacob Reimer, Laurent C. Moreaux, Trevor M. Fowler, Derrick Chi, Wesley D. Sacher, Maisie Lo, Karl A. Deisseroth, Andreas Savas Tolias, Andrei Faraon et al. · 2016 · Neurophotonics
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Ying Wang, Xudong Lin, Xi Chen, Xian Chen, Zhen Cheng Xu, Wenchong Zhang, Qinghai Liao, Xin Duan, Xin Wang, Ming Liu et al. · 2017 · Biomaterials
State‐dependent control of breathing by the retrotrapezoid nucleus
Peter G.R. Burke, Roy Kanbar, Tyler M. Basting, Walter M. Hodges, Kenneth E. Viar, Ruth L. Stornetta, Patrice G. Guyenet · 2015 · The Journal of Physiology
Optogenetic fMRI reveals distinct, frequency-dependent networks recruited by dorsal and intermediate hippocampus stimulations
Andrew J. Weitz, Zhongnan Fang, Hyun Joo Lee, Robert S. Fisher, Wesley Charles Smith, ManKin Choy, Jia Liu, Peter Lin, Matthew Rosenberg, Jin Hyung Lee · 2014 · NeuroImage
Regulation of zebrafish sleep and arousal states: current and prospective approaches
Cindy N. Chiu, David A. Prober · 2013 · Frontiers in Neural Circuits
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Peter A. Neumann, Yicun Wang, Yijin Yan, Yao Wang, Masago Ishikawa, Ranji Cui, Yanhua H. Huang, Susan R. Sesack, Oliver M. Schlüter, Yan Dong · 2016 · Neuropsychopharmacology
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Sebastian H. Bitzenhofer, Jastyn A. Pöpplau, Mattia Chini, Annette Marquardt, Ileana L. Hanganu‐Opatz · 2021 · Neuron
Optogenetics at the presynapse
Benjamin R. Rost, Jonas Wietek, Ofer Yizhar, Dietmar Schmitz · 2022 · Nature Neuroscience
Cellular tagging as a neural network mechanism for behavioural tagging
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Nishitani, Naoya, Nagayasu, Kazuki, Asaoka, Nozomi, Yamashiro, Mayumi, Andoh, Chihiro, Nagai, Yuma, Kinoshita, Haruko, Kawai, Hiroyuki, Shibui, Norihiro, Liu, Beihui et al. · 2019 · Neuropsychopharmacology
Optogenetic and Pharmacologic Dissection of Feedforward Inhibition inDrosophilaMotion Vision
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Komal Kampasi, Eran Stark, John P. Seymour, Kyounghwan Na, Herbert G. Winful, György Buzsáki, Kensall D. Wise, Euisik Yoon · 2016 · Scientific Reports
Optogenetic brain neuromodulation by stray magnetic field via flash-enhanced magneto-mechano-triboelectric nanogenerator
Han Eol Lee, Jung Hwan Park, Dahee Jang, Jung H. Shin, Tae Hong Im, Jae Hee Lee, Seong Kwang Hong, Hee Seung Wang, Min Sub Kwak, Mahesh Peddigari et al. · 2020 · Nano Energy
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Gary Aston‐Jones, Karl A. Deisseroth · 2013 · Brain Research
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Yiyang Gong, Jin Zhong Li, Mark J. Schnitzer · 2013 · PLoS ONE
Parvalbumin-Positive Interneurons Regulate Neuronal Ensembles in Visual Cortex
Masakazu Agetsuma, Jordan P. Hamm, Kentaro Tao, Shigeyoshi Fujisawa, Rafael Yuste · 2017 · Cerebral Cortex
Optogenetic control of body movements via flexible vertical light-emitting diodes on brain surface
Seunghyun Lee, Jeong-Jin Kim, Jung H. Shin, Han Eol Lee, Il‐Suk Kang, Kiuk Gwak, Dae‐Shik Kim, Daesoo Kim, Keon Jae Lee · 2017 · Nano Energy
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Bryan A. Copits, Raaj Gowrishankar, Patrick O’Neill, Jun-Nan Li, Kasey S. Girven, Judy J. Yoo, Xenia Meshik, Kyle E. Parker, Skylar M. Spangler, Abigail J. Elerding et al. · 2021 · Neuron
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Megan A. Kirchgessner, Alexis D. Franklin, Edward M. Callaway · 2020 · Proceedings of the National Academy of Sciences
All-optical interrogation of neural circuits in behaving mice
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Effects of Climbing Fiber Driven Inhibition on Purkinje Neuron Spiking
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Marcus Jeschke, Tobias Moser · 2015 · Hearing Research
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Sara Borgomaneri, Simone Battaglia, Giuseppe Sciamanna, Francesco Tortora, Daniela Laricchiuta · 2021 · Neuroscience & Biobehavioral Reviews
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Archaerhodopsin Selectively and Reversibly Silences Synaptic Transmission through Altered pH
Mohamady El-Gaby, Yu Zhang, Konstantin Wolf, Christof J. Schwiening, Ole Paulsen, Olivia A. Shipton · 2016 · Cell Reports
Distinct behavioral responses evoked by selective optogenetic stimulation of the major TRPV1+ and MrgD+ subsets of C-fibers
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Cornelia Schmitt, Christian Schultheis, Steven J. Husson, Jana Fiona Liewald, ALEXANDER R. GOTTSCHALK · 2012 · PLoS ONE
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I-Wen Chen, Eirini I. Papagiakoumou, Valentina Emiliani · 2018 · Current Opinion in Neurobiology
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Aurélien Bègue, Eirini I. Papagiakoumou, Ben Leshem, Rossella Conti, Leona Enke, Dan Oron, Valentina Emiliani · 2013 · Biomedical Optics Express
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Rainer W. Friedrich, Christel Genoud, Adrian Andreas Wanner · 2013 · Frontiers in Neural Circuits
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Mehdi Azimipour, Ryan Baumgartner, Yuming Liu, Steven L. Jacques, Kevin W. Eliceiri, Ramin Pashaie · 2014 · Journal of Biomedical Optics
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Determinants of Optogenetic Cortical Spreading Depolarizations
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