A toolkit and benchmark study for FRET-restrained high-precision structural modeling

Principles of Fluorescence Spectroscopy

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Principles of Fluorescence Spectroscopy

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Constant pressure molecular dynamics algorithms

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Characterizing the unfolded states of proteins using single-molecule FRET spectroscopy and molecular simulations

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Shot-Noise Limited Single-Molecule FRET Histograms: Comparison between Theory and Experiments

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Structural Organization of Bacterial RNA Polymerase Holoenzyme and the RNA Polymerase-Promoter Open Complex

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Single-molecule fluorescence resonance energy transfer reveals a dynamic equilibrium between closed and open conformations of syntaxin 1

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Accurate Single-Molecule FRET Studies Using Multiparameter Fluorescence Detection

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Accurate Distance Determination of Nucleic Acids via Förster Resonance Energy Transfer: Implications of Dye Linker Length and Rigidity

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Data registration and selective single-molecule analysis using multi-parameter fluorescence detection

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Multiparameter single-molecule fluorescence spectroscopy reveals heterogeneity of HIV-1 reverse transcriptase:primer/template complexes

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Separating Structural Heterogeneities from Stochastic Variations in Fluorescence Resonance Energy Transfer Distributions via Photon Distribution Analysis

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Effect of flexibility and cis residues in single-molecule FRET studies of polyproline

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Single-molecule FRET measures bends and kinks in DNA

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Single-molecule FRET–derived model of the synaptotagmin 1–SNARE fusion complex

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A nano-positioning system for macromolecular structural analysis

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Detecting the conformation of individual proteins in live cells

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Insights into DNA Polymerization Mechanisms from Structure and Function Analysis of HIV-1 Reverse Transcriptase

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Structural Heterogeneity and Quantitative FRET Efficiency Distributions of Polyprolines through a Hybrid Atomistic Simulation and Monte Carlo Approach

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Solution structure of the ESCRT-I complex by small-angle X-ray scattering, EPR, and FRET spectroscopy

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Fretting about FRET: Correlation between κ and R

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Single-molecule tracking of mRNA exiting from RNA polymerase II

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Filtered FCS: Species Auto‐ and Cross‐Correlation Functions Highlight Binding and Dynamics in Biomolecules

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Three-dimensional molecular modeling with single molecule FRET

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Single-Macromolecule Fluorescence Resonance Energy Transfer and Free-Energy Profiles

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Characterizing Single‐Molecule FRET Dynamics with Probability Distribution Analysis

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Characterizing Multiple Molecular States in Single-Molecule Multiparameter Fluorescence Detection by Probability Distribution Analysis

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Pushing the limits of what is achievable in protein–DNA docking: benchmarking HADDOCK’s performance

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Application of the Nano-Positioning System to the Analysis of Fluorescence Resonance Energy Transfer Networks

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Domain Orientation in the N-Terminal PDZ Tandem from PSD-95 Is Maintained in the Full-Length Protein

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Distance-Restrained Docking of Rifampicin and Rifamycin SV to RNA Polymerase Using Systematic FRET Measurements: Developing Benchmarks of Model Quality and Reliability

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Global Structure of Forked DNA in Solution Revealed by High-Resolution Single-Molecule FRET

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Reverse transcriptase in motion: Conformational dynamics of enzyme–substrate interactions

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Nonnucleoside Inhibitor Binding Affects the Interactions of the Fingers Subdomain of Human Immunodeficiency Virus Type 1 Reverse Transcriptase with DNA

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Discussion: Jackknife, Bootstrap and Other Resampling Methods in Regression Analysis

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Single-Molecule Nanopositioning: Structural Transitions of a Helicase-DNA Complex during ATP Hydrolysis

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Impact of template overhang-binding region of HIV-1 RT on the binding and orientation of the duplex region of the template-primer

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Precision and accuracy of single-molecule FRET measurements—a multi-laboratory benchmark study

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Principles for Integrative Structural Biology Studies

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Multidomain structure and correlated dynamics determined by self-consistent FRET networks

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Complex RNA Folding Kinetics Revealed by Single-Molecule FRET and Hidden Markov Models

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Biased cytochrome P450-mediated metabolism via small-molecule ligands binding P450 oxidoreductase

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