Using expression profiling data to identify human microRNA targets

Combinatorial microRNA target predictions

Krek, A., Grün, D., Poy, M. N., Wolf, R., Rosenberg, L., Epstein, E. J., MacMenamin, P., da Piedade, I., Gunsalus, K. C., Stoffel, M., et al. (2005) · Nature Genetics · doi:10.1038/ng1536 · Cited by 4,603

MicroRNA targets in Drosophila

Enright, A. J., John, B., Gaul, U., Tuschl, T., Sander, C., & Marks, D. S. (2003) · Genome Biology · doi:10.1186/gb-2003-5-1-r1 · Cited by 3,597

The role of site accessibility in microRNA target recognition

Kertesz, M., Iovino, N., Unnerstall, U., Gaul, U., & Segal, E. (2007) · Nature Genetics · doi:10.1038/ng2135 · Cited by 2,460

The Widespread Impact of Mammalian MicroRNAs on mRNA Repression and Evolution

Farh, K. K.-H., Grimson, A., Jan, C., Lewis, B. P., Johnston, W. K., Lim, L. P., Burge, C. B., & Bartel, D. P. (2005) · Science · doi:10.1126/science.1121158 · Cited by 1,484

Animal MicroRNAs Confer Robustness to Gene Expression and Have a Significant Impact on 3′UTR Evolution

Stark, A., Brennecke, J., Bushati, N., Russell, R. B., & Cohen, S. M. (2005) · Cell · doi:10.1016/j.cell.2005.11.023 · Cited by 1,080

Rapid Destruction of Human Cdc25A in Response to DNA Damage

Mailand, N., Falck, J., Lukas, C., Syljuåsen, R. G., Welcker, M., Bartek, J., & Lukas, J. (2000) · Science · doi:10.1126/science.288.5470.1425 · Cited by 787

miRWalk: An online resource for prediction of microRNA binding sites

Sticht, C., De La Torre, C., Parveen, A., & Gretz, N. (2018) · PLOS ONE · doi:10.1371/journal.pone.0206239 · Cited by 1,607

Mechanisms of miRNA-mediated post-transcriptional regulation in animal cells

Chekulaeva, M., & Filipowicz, W. (2009) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2009.04.009 · Cited by 685

let-7 microRNAs in development, stem cells and cancer

Büssing, I., Slack, F. J., & Großhans, H. (2008) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2008.07.001 · Cited by 607

mirDIP 4.1—integrative database of human microRNA target predictions

Tokar, T., Pastrello, C., Rossos, A. E. M., Abovsky, M., Hauschild, A.-C., Tsay, M., Lu, R., & Jurisica, I. (2018) · Nucleic Acids Research · doi:10.1093/nar/gkx1144 · Cited by 572

Identifying miRNAs, targets and functions

Liu, B., Li, J., & Cairns, M. J. (2014) · Briefings in Bioinformatics · doi:10.1093/bib/bbs075 · Cited by 563

Integrative MicroRNA and Proteomic Approaches Identify Novel Osteoarthritis Genes and Their Collaborative Metabolic and Inflammatory Networks

Iliopoulos, D., Malizos, K. N., Oikonomou, P., & Tsezou, A. (2008) · PLoS ONE · doi:10.1371/journal.pone.0003740 · Cited by 481

Common features of microRNA target prediction tools

Peterson, S. M., Thompson, J. A., Ufkin, M. L., Sathyanarayana, P., Liaw, L., & Congdon, C. B. (2014) · Frontiers in Genetics · doi:10.3389/fgene.2014.00023 · Cited by 462

MicroRNA regulatory networks in human adipose tissue and obesity

Arner, P., & Kulyté, A. (2015) · Nature Reviews Endocrinology · doi:10.1038/nrendo.2015.25 · Cited by 457

MicroRNAs in Common Human Diseases

Li, Y., & Kowdley, K. V. (2012) · Genomics, Proteomics & Bioinformatics · doi:10.1016/j.gpb.2012.07.005 · Cited by 360

MicroRNA-221/222 confers breast cancer fulvestrant resistance by regulating multiple signaling pathways

Rao, X., Di Leva, G., Li, M., Fang, F., Devlin, C., Hartman-Frey, C., Burow, M. E., Ivan, M., Croce, C. M., & Nephew, K. P. (2011) · Oncogene · doi:10.1038/onc.2010.487 · Cited by 342

Nuclear functions of mammalian MicroRNAs in gene regulation, immunity and cancer

Liu, H., Lei, C., He, Q., Pan, Z., Xiao, D., & Tao, Y. (2018) · Molecular Cancer · doi:10.1186/s12943-018-0765-5 · Cited by 336

Expression profiling of microRNAs by deep sequencing

Creighton, C. J., Reid, J. G., & Gunaratne, P. H. (2009) · Briefings in Bioinformatics · doi:10.1093/bib/bbp019 · Cited by 288

A miRNA signature of prion induced neurodegeneration.

Saba, R., Goodman, C. D., Huzarewich, R. L. C. H., Robertson, C., & Booth, S. A. (2008) · PLoS ONE · doi:10.1371/journal.pone.0003652 · Cited by 251

Integrative molecular bioinformatics study of human adrenocortical tumors: microRNA, tissue-specific target prediction, and pathway analysis

Tömböl, Z., Szabó, P. M., Molnár, V., Wiener, Z., Tölgyesi, G., Horányi, J., Riesz, P., Reismann, P., Patócs, A., Likó, I., et al. (2009) · Endocrine Related Cancer · doi:10.1677/erc-09-0096 · Cited by 176

MicroRNA Expression and Regulation in Human, Chimpanzee, and Macaque Brains

Hu, H. Y., Guo, S., Xi, J., Yan, Z., Fu, N., Zhang, X., Menzel, C., Liang, H., Yang, H., Zhao, M., et al. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1002327 · Cited by 130

MiR‐205 silences MED1 in hypoxic primary human trophoblasts

Mouillet, J., Chu, T., Nelson, D. M., Mishima, T., & Sadovsky, Y. (2010) · The FASEB Journal · doi:10.1096/fj.09-149724 · Cited by 125

Mirsynergy: detecting synergistic miRNA regulatory modules by overlapping neighbourhood expansion

Li, Y., Liang, C., Wong, K.-C., Luo, J., & Zhang, Z. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu373 · Cited by 83

Reciprocal regulation of microRNA and mRNA profiles in neuronal development and synapse formation

Manakov, S. A., Grant, S. G., & Enright, A. J. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-419 · Cited by 34

MicroRNA-mRNA interaction network using TSK-type recurrent neural fuzzy network

Vineetha, S., Chandra Shekara Bhat, C., & Idicula, S. M. (2013) · Gene · doi:10.1016/j.gene.2012.12.063 · Cited by 14

The Transcription Factor, α1ACT, Acts Through a MicroRNA Network to Regulate Neurogenesis and Cell Death During Neonatal Cerebellar Development

Wei, C., Benzow, K., Koob, M. D., Gomez, C. M., & Du, X. (2022) · The Cerebellum · doi:10.1007/s12311-022-01431-2 · Cited by 5