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Protein structure homology modeling using SWISS-MODEL workspace
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Cites
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Hamdan, F. F., Gauthier, J., Araki, Y., Lin, D.-T., Yoshizawa, Y., Higashi, K., Park, A.-R., Spiegelman, D., Dobrzeniecka, S., Piton, A., et al. (2011) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2011.02.001 · Cited by 349
State-of-the-Art Estimation of Protein Model Accuracy Using AlphaFold
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Günther, A., Einwich, A., Sjulstok, E., Feederle, R., Bolte, P., Koch, K.-W., Solov’yov, I. A., & Mouritsen, H. (2018) · Current Biology · doi:10.1016/j.cub.2017.12.003 · Cited by 204
Structural basis of TFIIH activation for nucleotide excision repair
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Predictomes, a classifier-curated database of AlphaFold-modeled protein-protein interactions
Schmid, E. W., & Walter, J. C. (2025) · Molecular Cell · doi:10.1016/j.molcel.2025.01.034 · Cited by 120
“Computational strategies include homology modeling 8,9 , rigid body docking 10 , and linking genomic data with structural information 11 .”
Acid-Tolerant Monomeric GFP from Olindias formosa
Shinoda, H., Ma, Y., Nakashima, R., Sakurai, K., Matsuda, T., & Nagai, T. (2018) · Cell Chemical Biology · doi:10.1016/j.chembiol.2017.12.005 · Cited by 93
Functionally compromised CHD7 alleles in patients with isolated GnRH deficiency
Balasubramanian, R., Choi, J.-H., Francescatto, L., Willer, J., Horton, E. R., Asimacopoulos, E. P., Stankovic, K. M., Plummer, L., Buck, C. L., Quinton, R., et al. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1417438111 · Cited by 83
Mapping the Structural Determinants Required for AAVrh.10 Transport across the Blood-Brain Barrier
Albright, B. H., Storey, C. M., Murlidharan, G., Castellanos Rivera, R. M., Berry, G. E., Madigan, V. J., & Asokan, A. (2018) · Molecular Therapy · doi:10.1016/j.ymthe.2017.10.017 · Cited by 82
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Antibody modeling assessment II. Structures and models
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Kim, J. H., Cheng, L. W., Chan, K. L., Tam, C. C., Mahoney, N., Friedman, M., Shilman, M. M., & Land, K. M. (2020) · Antibiotics · doi:10.3390/antibiotics9110812 · Cited by 71
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“Based on the high sequence similarity between the RagA family and the RagC family, we generated a model structure of GDP-bound Gtr1p by using the structure of Gtr2p as a template in homology modeling (20).”
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Everett, K. L., Bunney, T. D., Yoon, Y., Rodrigues-Lima, F., Harris, R., Driscoll, P. C., Abe, K., Fuchs, H., Hrabé de Angelis, M., Yu, P., et al. (2009) · Journal of Biological Chemistry · doi:10.1074/jbc.m109.019265 · Cited by 63
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Huang, Y., Zhou, S., Chen, W.-J., Zhou, X., Chen, S.-F., Song, H., Yan, Z., Mishra, S., Ghorab, M. A., Bhatt, P., et al. (2025) · Chemical Engineering Journal · doi:10.1016/j.cej.2025.160030 · Cited by 28
Biochemical and Biophysical Characterization of the Enolase from Helicobacter pylori
López-López, M. D. J., Rodríguez-Luna, I. C., Lara-Ramírez, E. E., López-Hidalgo, M., Benítez-Cardoza, C. G., & Guo, X. (2018) · BioMed Research International · doi:10.1155/2018/9538193 · Cited by 13
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Metadata
- Authors
- Bordoli, L., Kiefer, F., Arnold, K., Benkert, P., Battey, J., & Schwede, T.
- Venue
- Nature Protocols
- Published
- 2008-12-11
- Volume
- 4
- Issue
- 1
- Pages
- 1-13
- ISSN
- 1750-2799 (ISSN-L)
- 1754-2189
- OpenAlex
- W1987474460
- Cited by
- 1,229
- References
- 6
- FWCI
- 13.90
- Type
- journal article
- Language
- en
- Open access
- closed
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
