The DOI matches its Crossref record; 8 of the 8 references it cites were found in a registry or an index.
Mutational effects and the evolution of new protein functions
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Mechanisms of change in gene copy number
Hastings, P. J., Lupski, J. R., Rosenberg, S. M., & Ira, G. (2009) · Nature Reviews Genetics · doi:10.1038/nrg2593 · Cited by 1,316
Turning a hobby into a job: How duplicated genes find new functions
Conant, G. C., & Wolfe, K. H. (2008) · Nature Reviews Genetics · doi:10.1038/nrg2482 · Cited by 1,281
Hsp90 Potentiates the Rapid Evolution of New Traits: Drug Resistance in Diverse Fungi
Cowen, L. E., & Lindquist, S. (2005) · Science · doi:10.1126/science.1118370 · Cited by 698
Energy Constraints on the Evolution of Gene Expression
Wagner, A. (2005) · Molecular Biology and Evolution · doi:10.1093/molbev/msi126 · Cited by 419
Robustness–epistasis link shapes the fitness landscape of a randomly drifting protein
Bershtein, S., Segal, M., Bekerman, R., Tokuriki, N., & Tawfik, D. S. (2006) · Nature · doi:10.1038/nature05385 · Cited by 414 · cited 1×
“Protein fitness ( W p ) therefore corresponds to the concentration of an antibiotic that can be tolerated by Escherichia coli cells that carry a given enzyme varian”
BackgroundSelf-citationOhno's dilemma: Evolution of new genes under continuous selection
Bergthorsson, U., Andersson, D. I., & Roth, J. R. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0707158104 · Cited by 405 · cited 1×
“Furthermore, as discussed above, gene duplication is often not a neutral event, but is positively selected under demands for higher protein dose”
BackgroundMammalian Per-Arnt-Sim Proteins in Environmental Adaptation
McIntosh, B. E., Hogenesch, J. B., & Bradfield, C. A. (2010) · Annual Review of Physiology · doi:10.1146/annurev-physiol-021909-135922 · Cited by 352
An Expressed Fgf4 Retrogene Is Associated with Breed-Defining Chondrodysplasia in Domestic Dogs
Parker, H. G., VonHoldt, B. M., Quignon, P., Margulies, E. H., Shao, S., Mosher, D. S., Spady, T. C., Elkahloun, A., Cargill, M., Jones, P. G., et al. (2009) · Science · doi:10.1126/science.1173275 · Cited by 342
Cited by
Starr, T. N., Greaney, A. J., Hilton, S. K., Ellis, D., Crawford, K. H. D., Dingens, A. S., Navarro, M. J., Bowen, J. E., Tortorici, M. A., Walls, A. C., et al. (2020) · Cell · doi:10.1016/j.cell.2020.08.012 · Cited by 1,956
Divergence of duplicate genes in exon-intron structure
Xu, G., Guo, C., Shan, H., & Kong, H. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1109047109 · Cited by 1,072
Local fitness landscape of the green fluorescent protein
Sarkisyan, K. S., Bolotin, D. A., Meer, M. V., Usmanova, D. R., Mishin, A. S., Sharonov, G. V., Ivankov, D. N., Bozhanova, N. G., Baranov, M. S., Soylemez, O., et al. (2016) · Nature · doi:10.1038/nature17995 · Cited by 591
Self-citationA Comprehensive Biophysical Description of Pairwise Epistasis throughout an Entire Protein Domain
Olson, C. A., Wu, N. C., & Sun, R. (2014) · Current Biology · doi:10.1016/j.cub.2014.09.072 · Cited by 408
Network Context and Selection in the Evolution to Enzyme Specificity
Nam, H., Lewis, N. E., Lerman, J. A., Lee, D.-H., Chang, R. L., Kim, D., & Palsson, B. O. (2012) · Science · doi:10.1126/science.1216861 · Cited by 277
Panoramic view of a superfamily of phosphatases through substrate profiling
Huang, H., Pandya, C., Liu, C., Al-Obaidi, N. F., Wang, M., Zheng, L., Toews Keating, S., Aono, M., Love, J. D., Evans, B., et al. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1423570112 · Cited by 168
FOXP2 and the role of cortico-basal ganglia circuits in speech and language evolution
Enard, W. (2011) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2011.04.008 · Cited by 149
Deconstruction of the Ras switching cycle through saturation mutagenesis
Bandaru, P., Shah, N. H., Bhattacharyya, M., Barton, J. P., Kondo, Y., Cofsky, J. C., Gee, C. L., Chakraborty, A. K., Kortemme, T., Ranganathan, R., et al. (2017) · eLife · doi:10.7554/elife.27810 · Cited by 117
The rise and fall of TRP-N, an ancient family of mechanogated ion channels, in Metazoa
Schüler, A., Schmitz, G., Reft, A., Özbek, S., Thurm, U., & Bornberg-Bauer, E. (2015) · Genome Biology and Evolution · doi:10.1093/gbe/evv091 · Cited by 51
Interpreting the molecular mechanisms of disease variants in human transmembrane proteins
Tiemann, J. K. S., Zschach, H., Lindorff-Larsen, K., & Stein, A. (2023) · Biophysical Journal · doi:10.1016/j.bpj.2022.12.031 · Cited by 35
Simultaneous enhancement of multiple functional properties using evolution-informed protein design
Fram, B., Su, Y., Truebridge, I., Riesselman, A. J., Ingraham, J. B., Passera, A., Napier, E., Thadani, N. N., Lim, S., Roberts, K., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-49119-x · Cited by 34
The Statistical Trends of Protein Evolution: A Lesson from AlphaFold Database
Tang, Q.-Y., Ren, W., Wang, J., & Kaneko, K. (2022) · Molecular Biology and Evolution · doi:10.1093/molbev/msac197 · Cited by 31
Bacterial catabolism of s-triazine herbicides: biochemistry, evolution and application
(2020) · Advances in Microbial Physiology · doi:10.1016/bs.ampbs.2020.01.004 · Cited by 23
Heterologous expression of naturally evolved putative de novo proteins with chaperones
Eicholt, L. A., Aubel, M., Berk, K., Bornberg‐Bauer, E., & Lange, A. (2022) · Protein Science · doi:10.1002/pro.4371 · Cited by 18
Functionally important residues from graph analysis of coevolved dynamic couplings
Xu, M., Dantu, S. C., Garnett, J. A., Bonomo, R. A., Pandini, A., & Haider, S. (2025) · eLife · doi:10.7554/elife.105005 · Cited by 3
Karapanagioti, F., Atlason, Ú. Á., Slotboom, D. J., Poolman, B., & Obermaier, S. (2024) · eLife · doi:10.7554/elife.93971.3 · Cited by 1
Hacisuleyman, A., Gul, A., & Erman, B. (2025) · Proteins: Structure, Function, and Bioinformatics · doi:10.1002/prot.26795 · Cited by 1
Fitness landscape of substrate-adaptive mutations in evolved APC transporters
Karapanagioti, F., Atlason, Ú. Á., Slotboom, D. J., Poolman, B., & Obermaier, S. (2023) · doi:10.1101/2023.10.12.562049
Metadata
- Authors
- Soskine, M., & Tawfik, D. S.
- Venue
- Nature Reviews Genetics
- Published
- 2010-08
- Volume
- 11
- Issue
- 8
- Pages
- 572-582
- ISSN
- 1471-0056 (ISSN-L)
- 1471-0064
- OpenAlex
- W1988625445
- Cited by
- 454
- References
- 8
- FWCI
- 2.56
- Type
- journal article
- Language
- en
- Open access
- closed
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.