Context-dependent control of alternative splicing by RNA-binding proteins
DOI 10.1038/nrg3778
Cited by (1,000)
Items 101–200 of 1,000
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- High-Resolution RNA Maps Suggest Common Principles of Splicing and Polyadenylation Regulation by TDP-43Gregor Rot, Zhen Wang, Ina Huppertz, Miha Modic, Tina Lenče, Martina Hallegger, Nejc Haberman, Tomaž Curk, Christian von Mering, Jernej Ule · 2017 · Cell Reports
- Transcriptome-wide splicing network reveals specialized regulatory functions of the core spliceosomeMalgorzata Ewa Rogalska, Estefanía Mancini, Sophie Bonnal, André Gohr, Bryan M. Dunyak, Niccolò Arecco, Peter G. Smith, Frédéric H. Vaillancourt, Juan Valcárcel · 2024 · Science
- A dynamic intron retention program in the mammalian megakaryocyte and erythrocyte lineagesChristopher R. Edwards, William Ritchie, Justin J. -L. Wong, Ulf Schmitz, Robert M. Middleton, Xiuli An, Narla Mohandas, John E.J. Rasko, Gerd A. Blobel · 2016 · Blood
- Evidence that C9ORF72 Dipeptide Repeat Proteins Associate with U2 snRNP to Cause Mis-splicing in ALS/FTD PatientsShanye Yin, Rodrigo Lopez-Gonzalez, Ryan C. Kunz, Jaya Pal Gangopadhyay, Carl Borufka, Steven P. Gygi, Fen‐Biao Gao, Robin Reed · 2017 · Cell Reports
- Alternative splicing in cancers: From aberrant regulation to new therapeuticsXiaowei Song, Zhenyu Zeng, Huanhuan Y. Wei, Zefeng Wang · 2017 · Seminars in Cell and Developmental Biology
- Perfect timing: splicing and transcription rates in living cellsAlpert, Tara, Herzel, Lydia, Neugebauer, Karla M. · 2017 · WIREs RNA
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- Second-Generation HSP90 Inhibitor Onalespib Blocks mRNA Splicing of Androgen Receptor Variant 7 in Prostate Cancer CellsRoberta Ferraldeschi, Jonathan C. Welti, Marissa V. Powers, Wei Yuan, Tomoko Smyth, George Seed, Ruth Riisnaes, Somaieh Hedayat, Hannah Wang, Mateus Crespo et al. · 2016 · Cancer Research
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- Frameshift indels introduced by genome editing can lead to in-frame exon skippingSimon Lalonde, Oliver Andrew Stone, Samuel Lessard, Adam Lavertu, Jessica Desjardins, Mélissa Beaudoin, Manuel A. Rivas, Didier Y. R. Stainier, Guillaume Lettre · 2017 · PLoS ONE
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- RNA Binding Proteins RZ-1B and RZ-1C Play Critical Roles in Regulating Pre-mRNA Splicing and Gene Expression during Development in ArabidopsisZhe Wu, Danling Zhu, Xiaoya Lin, Jin Miao, Lianfeng Gu, Xian Mo Deng, Qian Yang, Kangtai Sun, Danmeng Zhu, Xiaofeng Cao et al. · 2015 · The Plant Cell
- Repression of the Central Splicing Regulator RBFox2 Is Functionally Linked to Pressure Overload-Induced Heart FailureChaoliang Wei, Jinsong Qiu, Yu Zhou, Yuanchao Xue, Jing Hu, Kunfu Ouyang, Indroneal Banerjee, Caimei Zhang, Biyi Chen, Hairi Li et al. · 2015 · Cell Reports
- Regulation of constitutive and alternative mRNA splicing across the human transcriptome by PRPF8 is determined by 5′ splice site strengthWickramasinghe, Vihandha O., Gonzàlez-Porta, Mar, Perera, David, Bartolozzi, Arthur R., Sibley, Christopher R., Hallegger, Martina, Ule, Jernej, Marioni, John C., Venkitaraman, Ashok R. · 2015 · Genome Biology
- Genome-Wide Identification of Fas/CD95 Alternative Splicing Regulators Reveals Links with Iron HomeostasisJuan Ramón Tejedor, Panagiotis Papasaikas, Juan Valcárcel · 2014 · Molecular Cell
- Diversification of the muscle proteome through alternative splicingKiran Kumar Nakka, Claudia Ghigna, Davide Gabellini, Francis Jeffrey Dilworth · 2018 · Skeletal Muscle
- Discovery of Protein–lncRNA Interactions by Integrating Large-Scale CLIP-Seq and RNA-Seq DatasetsJunhao Li, Shun Liu, Ling‐Ling Zheng, Jie Wu, Wenju Sun, Zelin Wang, Hui Zhou, Liang‐Hu Qu, Jianhua Yang · 2015 · Frontiers in Bioengineering and Biotechnology
- PHF5A Epigenetically Inhibits Apoptosis to Promote Breast Cancer ProgressionYi-Zi Zheng, Mengzhu Xue, Hong-Jie Shen, Xiao-Guang Li, Ding Ma, Yue Gong, Yi‐Rong Liu, Feng Qiao, Hong-Yan Xie, Bi Lian et al. · 2018 · Cancer Research
- SpliceVault predicts the precise nature of variant-associated mis-splicingRuebena Dawes, Adam Bournazos, Samantha J. Bryen, Shobhana Bommireddipalli, Rhett G. Marchant, Himanshu Joshi, Sandra T. Cooper · 2023 · Nature Genetics
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- OncoSplicing: an updated database for clinically relevant alternative splicing in 33 human cancersYangjun Zhang, Xiangyang Yao, Hui Zhou, Xiaoliang Wu, Jianbo Tian, Jin Zeng, Libin Yan, Chen Duan, Haoran Liu, Heng Li et al. · 2021 · Nucleic Acids Research
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- Alternative splicing rewires Hippo signaling pathway in hepatocytes to promote liver regenerationBangru, Sushant, Arif, Waqar, Seimetz, Joseph, Bhate, Amruta, Chen, Jackie, Rashan, Edrees H., Carstens, Russ P., Anakk, Sayeepriyadarshini, Kalsotra, Auinash · 2018 · Nature Structural & Molecular Biology
- PTB/nPTB: master regulators of neuronal fate in mammalsJing Hu, Hao Qian, Yuanchao Xue, Xiang‐Dong Fu · 2018 · Biophysics Reports
- Mutations in spliceosome genes and therapeutic opportunities in myeloid malignanciesJustin Taylor, Stanley Chun-Wei Lee · 2019 · Genes Chromosomes and Cancer
- The Function of Pre-mRNA Alternative Splicing in Mammal SpermatogenesisHuibin Song, Ling Wang, Dake Chen, Fenge Li · 2019 · International Journal of Biological Sciences
- Splicing-associated chromatin signatures: a combinatorial and position-dependent role for histone marks in splicing definitionEneritz Agirre, Andrew Oldfield, Nicolás Bellora, Alexandre Segelle, Reini F. Luco · 2021 · Nature Communications
- Co-regulatory activity of hnRNP K and NS1-BP in influenza and human mRNA splicingMatthew G. Thompson, Raquel Muñoz-Moreno, Prasanna Bhat, Renat Roytenberg, John Lindberg, Matthew R. Gazzara, Michael J. Mallory, Ke Zhang, Adolfo García‐Sastre, Beatriz M. A. Fontoura et al. · 2018 · Nature Communications
- Beyond Transcription: Roles of Transcription Factors in Pre-mRNA SplicingXavier Rambout, Franck Dequiedt, Lynne E. Maquat · 2017 · Chemical Reviews
- The role of alternative splicing in cancerBabita Singh, Eduardo Eyras · 2016 · Transcription
- PTEN arginine methylation by PRMT6 suppresses PI3K–AKT signaling and modulates pre-mRNA splicingJiawen Feng, Yaping Dang, Weiqi Zhang, Xuyang Zhao, Cong Zhang, Zhiyuan Hou, Yan Jin, Michael A. McNutt, Andrew R. Marks, Yuxin Yin · 2019 · Proceedings of the National Academy of Sciences
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- In vitro iCLIP-based modeling uncovers how the splicing factor U2AF2 relies on regulation by cofactorsF.X. Reymond Sutandy, Stefanie Ebersberger, Lu Huang, Anke Busch, Maximilian Bach, Hyun-Seo Kang, Jörg Fallmann, Daniel Maticzka, Rolf Backofen, Peter Florian Stadler et al. · 2018 · Genome Research
- miRNA-Mediated KHSRP Silencing Rewires Distinct Post-transcriptional Programs during TGF-β-Induced Epithelial-to-Mesenchymal TransitionMargherita Puppo, Gabriele Bucci, Martina Sofia Rossi, Matteo Giovarelli, Domenico Bordo, Arfa Moshiri, Franco Gorlero, Roberto Gherzi, Paola Briata · 2016 · Cell Reports
- BCAS2 is involved in alternative mRNA splicing in spermatogonia and the transition to meiosisWenbo Liu, Fengchao Wang, Qianhua Xu, Junchao Shi, Xiaoxin Zhang, Xukun Lu, Zhen‐Ao Zhao, Zheng Gao, Huaixiao Ma, Enkui Duan et al. · 2017 · Nature Communications
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