Context-dependent control of alternative splicing by RNA-binding proteins

Development and Applications of CRISPR-Cas9 for Genome Engineering

Hsu, P. D., Lander, E. S., & Zhang, F. (2014) · Cell · doi:10.1016/j.cell.2014.05.010 · Cited by 5,762

Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP

Hafner, M., Landthaler, M., Burger, L., Khorshid, M., Hausser, J., Berninger, P., Rothballer, A., Ascano, M., Jungkamp, A.-C., Munschauer, M., et al. (2010) · Cell · doi:10.1016/j.cell.2010.03.009 · Cited by 2,873

Mechanisms of Alternative Pre-Messenger RNA Splicing

Black, D. L. (2003) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.72.121801.161720 · Cited by 2,704

The Spliceosome: Design Principles of a Dynamic RNP Machine

Wahl, M. C., Will, C. L., & Lührmann, R. (2009) · Cell · doi:10.1016/j.cell.2009.02.009 · Cited by 2,665

Expansion of the eukaryotic proteome by alternative splicing

Nilsen, T. W., & Graveley, B. R. (2010) · Nature · doi:10.1038/nature08909 · Cited by 2,270

Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins

Castello, A., Fischer, B., Eichelbaum, K., Horos, R., Beckmann, B. M., Strein, C., Davey, N. E., Humphreys, D. T., Preiss, T., Steinmetz, L. M., et al. (2012) · Cell · doi:10.1016/j.cell.2012.04.031 · Cited by 2,132

Frequent pathway mutations of splicing machinery in myelodysplasia

Yoshida, K., Sanada, M., Shiraishi, Y., Nowak, D., Nagata, Y., Yamamoto, R., Sato, Y., Sato-Otsubo, A., Kon, A., Nagasaki, M., et al. (2011) · Nature · doi:10.1038/nature10496 · Cited by 2,029

Cell-free Formation of RNA Granules: Low Complexity Sequence Domains Form Dynamic Fibers within Hydrogels

Kato, M., Han, T. W., Xie, S., Shi, K., Du, X., Wu, L. C., Mirzaei, H., Goldsmith, E. J., Longgood, J., Pei, J., et al. (2012) · Cell · doi:10.1016/j.cell.2012.04.017 · Cited by 2,012

A compendium of RNA-binding motifs for decoding gene regulation

Ray, D., Kazan, H., Cook, K. B., Weirauch, M. T., Najafabadi, H. S., Li, X., Gueroussov, S., Albu, M., Zheng, H., Yang, A., et al. (2013) · Nature · doi:10.1038/nature12311 · Cited by 1,480

Mutations in prion-like domains in hnRNPA2B1 and hnRNPA1 cause multisystem proteinopathy and ALS

Kim, H. J., Kim, N. C., Wang, Y., Scarborough, E. A., Moore, J., Diaz, Z., MacLea, K. S., Freibaum, B. D., Li, S., Molliex, A., et al. (2013) · Nature · doi:10.1038/nature11922 · Cited by 1,478

Role of the RNA-binding protein family in gynecologic cancers.

Hao, L., Zhang, J., Liu, Z., Zhang, Z., Mao, T., & Guo, J. (2023) · PubMed Central · Cited by 2

Effects of Gene Alternative Splicing Events on Resistance to Cryptocaryonosis of Large Yellow Croaker (Larimichthys crocea)

Li, X., Ke, Q., Qu, A., Wang, J., Zhao, J., Xu, P., & Zhou, T. (2024) · Marine Biotechnology · doi:10.1007/s10126-024-10342-8 · Cited by 2

RNA binding protein CUGBP2/ETR-3 regulates STAT3 alternative splicing

Kise, M., Masaki, S., Kataoka, N., & Suzuki, K. (2024) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2024.151000 · Cited by 2

Putrescine modulates alternative splicing of gonadotropin hormone-releasing hormone (GnRH) through differential regulation of splicing factors

Gautam, P., Srivastava, V., Bammidi, S., Ghosh, S., Babu, V. S., & Banerjee, A. (2025) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2025.151795 · Cited by 2

Identification of core noncoding RNA-associated competing endogenous RNA networks in renal fibrosis via whole-transcriptome sequencing

Chen, Y., Cheng, M., Dai, R., Wang, W., Sang, Y., Wei, L., Gao, Y., Zhang, W. Y., Wang, Y., & Zhang, L. (2025) · Renal Failure · doi:10.1080/0886022x.2025.2522973 · Cited by 2

The O-GlcNAcylation of β-actin Ser199 controls nuclear speckle localization and is dysregulated in diabetes

Akimoto, Y., Miura, Y., Kudo, A., Fukutomi, T., Arai, T., Chiba, Y., Kaname, S., Yan, K., & Hart, G. W. (2025) · Histochemistry and Cell Biology · doi:10.1007/s00418-025-02429-7 · Cited by 2

C atsnap : a user‐friendly algorithm for determining the conservation of protein variants reveals extensive parallelisms in the evolution of alternative splicing

Timofeyenko, K., Kanavalau, D., Alexiou, P., Kalyna, M., & Růžička, K. (2023) · New Phytologist · doi:10.1111/nph.18799 · Cited by 2

RNA sequencing reveals the transcriptomic landscape and alternative splicing events induced by LGALS1 silencing in non-small cell lung cancer

Shi, H., Zhang, Y., Liu, J., Wang, Y., & Fang, P. (2023) · Advances in Clinical and Experimental Medicine · doi:10.17219/acem/163519 · Cited by 2

Alternative splicing factors and cardiac disease: more than just missplicing?

Gregorich, Z. R., & Guo, W. (2025) · RNA · doi:10.1261/rna.080332.124 · Cited by 2

Host microRNA-31-5p regulates KHDRBS3 expression and modulates viral gene expression during KSHV lytic reactivation

Lee, S. M., Avalos, C. L., Miliotis, C., Doh, H. M., Chan, E., Kaye, K. M., & Slack, F. J. (2026) · Cell Reports · doi:10.1016/j.celrep.2026.117160 · Cited by 2

Gene Regulation through mRNA Expression

Inose, H., Mukai, K., Ito, M., & Masuda, S. (2015) · Advances in Biological Chemistry · doi:10.4236/abc.2015.52005 · Cited by 2

Experimental approaches to studying the nature and impact of splicing variation in zebrafish

Keightley, M.-C., Markmiller, S., Love, C. G., Rasko, J. E. J., Lieschke, G. J., & Heath, J. K. (2016) · Methods in cell biology · doi:10.1016/bs.mcb.2016.02.006 · Cited by 2

To Splice or Not to Splice, That Is the Treatment

García-Blanco, M. A. (2020) · Cell chemical biology · doi:10.1016/j.chembiol.2020.12.002 · Cited by 2

A Cell-Based High-Throughput Method for Identifying Modulators of Alternative Splicing

Zheng, S. (2017) · Methods in molecular biology · doi:10.1007/978-1-4939-7204-3_16 · Cited by 2

Identification of cell-type specific alternative transcripts in the multicellular alga Volvox carteri

Balasubramanian, R. N., Gao, M., & Umen, J. (2023) · BMC Genomics · doi:10.1186/s12864-023-09558-0 · Cited by 2

Characterization of the regulation of CD46 alternative splicing

Tang, S. J. (2016) · DR-NTU (Nanyang Technological University) · doi:10.32657/10356/65984 · Cited by 2

Isoform-specific translational control is evolutionarily conserved in primatesPreprint

Draper, J. M., Philipp, J., Neeb, Z., Thomas, R. C., Katzman, S. J., Salama, S. R., Haussler, D. H., & Sanford, J. R. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.04.21.537863 · Cited by 3

Long-read sequencing and profiling of RNA-binding proteins reveals the pathogenic mechanism of aberrant splicing of an SCN1A poison exon in epilepsyPreprint

Happ, H. C., Schneider, P. N., Hong, J. H., Goes, E., Bandouil, M. D., Biar, C. G., Ramamurthy, A., Reese, F., Engel, K. L., Weckhuysen, S., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.05.04.538282 · Cited by 2

Simultaneous detection of RNA modifications using In Vitro Transcription and Direct RNA Nanopore sequencingPreprint

Mulroney, L., Tarrero, L. C., Maragno, P., Rubolino, C., Maestri, S., Furlan, M., Marzi, M. J., Fitzgerald, T. W., Leonardi, T., Pelizzola, M., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.10.22.619587 · Cited by 2

Generative modeling for RNA splicing prediction and designPreprint

Wu, D., Maus, N., Jha, A., Yang, K., Wales-McGrath, B. D., Jewell, S., Tangiyan, A., Choi, P. S., Gardner, J. R., & Barash, Y. (2025) · eLife · doi:10.7554/elife.106043 · Cited by 3

lhCLIP reveals the in vivo RNA–RNA interactions recognized by hnRNPK

Hu, Y., Hao, T., Yu, H., Miao, W., Zheng, Y., Tao, W., Zhuang, J., Wang, J., Fan, Y., & Jia, S. (2023) · PLoS Genetics · doi:10.1371/journal.pgen.1011006 · Cited by 1

SRSF9-Mediated Exon Recognition Promotes Exon 2 Inclusion in Mecp2 Pre-mRNA Alternative Splicing

Oshizuki, S., Masaki, S., Tanaka, S., & Kataoka, N. (2025) · International Journal of Molecular Sciences · doi:10.3390/ijms26073319 · Cited by 1

Splicing factor Nova regulates the splice variants in exons 3 and 6 of GABA receptor subunit RDL from Chilo suppressalis Walker (Lepidoptera: Crambidae)

Song, Z., Jiang, J., Tang, T., Luo, G., Wang, J., Lin, K., Mu, L., & Zhao, C. (2025) · Pesticide Biochemistry and Physiology · doi:10.1016/j.pestbp.2025.106556 · Cited by 1

Computational Splicing Analysis of Transcriptomic Data Reveals Sulforaphane Modulation of Alternative mRNA Splicing of DNA Repair Genes in Differentiated SH-SY5Y Neurons

Lui, M., Chiricosta, L., Iori, R., Mazzon, E., Minuti, A., & Artimagnella, O. (2025) · International Journal of Molecular Sciences · doi:10.3390/ijms26178187 · Cited by 1

Multi-scale cross-attention integrates dynamic and static features for protein–RNA prediction

Lu, C., Tao, P., Meng, X., Zeng, M., Pan, Y., & Wang, J. (2026) · Pattern Recognition · doi:10.1016/j.patcog.2026.113734 · Cited by 1

In Vitro Phase Separation Characterization of the Arabidopsis thaliana Glycine-Rich RNA-Binding Protein AtGRP2

Melo, G. S., Sachetto‐Martins, G., Santos, A. C. F., Cordeiro, Y., & Pinheiro, A. S. (2026) · ACS Omega · doi:10.1021/acsomega.6c02622 · Cited by 1

Involvement of dysregulated RNA binding protein and alternative splicing regulatory networks in diabetic nephropathy from type 2 albuminuric cohorts

Wang, Y., Zhang, J., & Tang, Q. (2025) · BMC Nephrology · doi:10.1186/s12882-025-04237-6 · Cited by 1

Functional study of RNA alternative splicing in zebrafish adaptation to low temperature

Li, J., Li, W., Lu, H., Zhao, Y., Zhu, Z., & Chen, L. (2025) · Comparative Biochemistry and Physiology Part D Genomics and Proteomics · doi:10.1016/j.cbd.2025.101656 · Cited by 1

Alternative splicing genes/events play important role in adaptation of mud crab Scylla paramamosain to low salinity

Shao, S., Mo, N., Bao, C., & Cui, Z. (2025) · Journal of Oceanology and Limnology · doi:10.1007/s00343-025-5011-6 · Cited by 1

RNA-binding proteins connect Exon usage to the chromatin

Robertson, H. B., Do, H. T. T., & Helms, V. (2025) · NAR Genomics and Bioinformatics · doi:10.1093/nargab/lqaf161 · Cited by 1

HnRNPA2B1 tunes antimycobacterial immune responses in macrophages through alternative splicing of Irgm1

Chapman, M. J., Huskey, J. B., Armijo, K. S., Hahn, S., Spellman-Reliford, J., Coleman, A. K., Mabry, C. J., Carpenter, S., Watson, R. O., & Patrick, K. L. (2026) · Infection and Immunity · doi:10.1128/iai.00732-25 · Cited by 1

Omics-based dissection of alternative splicing and the regulatory architecture in fungal genomes

Neves‐da‐Rocha, J., Lopes, M. E. R., Santos-Saboya, M. J., Azevedo, M. I. G., Petrucelli, M. F., Rossi, A., & Martinez-Rossi, N. M. (2026) · Current Research in Microbial Sciences · doi:10.1016/j.crmicr.2026.100555 · Cited by 1

Specificity determinants of the plant splicing code

Burgardt, R., Walter, H. C., & Wachter, A. (2026) · Journal of Experimental Botany · doi:10.1093/jxb/erag063 · Cited by 1

A homozygous synonymous variant in SMG5, encoding a nonsense-mediated mRNA decay factor, causes developmental delay with growth retardation and relative macrocephaly

Tibbe, D., Holling, T., Spohn, M., Alawi, M., Nampoothiri, S., & Kutsche, K. (2026) · Human Genetics · doi:10.1007/s00439-025-02813-2 · Cited by 1

Alternative splicing rewires breast cancer and opens therapeutic avenues

Jin, Y., Liang, Y., Kasvaei, M. M., & Yang, Q. (2026) · Cell Communication and Signaling · doi:10.1186/s12964-026-03017-5 · Cited by 1

Splicing deficiency is driven by genomic erosion in non-recombining algal mating-type chromosomes

Condon, C. J., Galvez, A., Kramer, A., Gozashti, L., Vollmers, C., Ares, M., & Corbett-Detig, R. B. (2026) · PLoS Biology · doi:10.1371/journal.pbio.3003823 · Cited by 1

Alternative splicing is coordinated through interconnected response pathways to direct major features of fungal cell physiology

Neves‐da‐Rocha, J., Lopes, M. E. R., Azevedo, M. I. G., Petrucelli, M. F., Santos-Saboya, M. J., Rossi, A., & Martinez-Rossi, N. M. (2026) · Fungal Biology Reviews · doi:10.1016/j.fbr.2026.100506 · Cited by 1

The structured mRNA element 45ABC mediates auto‐ and cross‐regulation of RBP45 genes via alternative splicing

Reinhardt, M., Burgardt, R., Engel, C., Sack, M., Weinberg, Z., & Wachter, A. (2026) · The Plant Journal · doi:10.1111/tpj.71060 · Cited by 1

Nuclear speckle protein SON safeguards efficient splicing of GC-rich genes

Fan, W., Zhou, Y., Zhang, X., Tong, C., Li, X., & Yin, Y. (2026) · Cell Research · doi:10.1038/s41422-026-01303-y · Cited by 1

Efficient Design of Compact Unstructured RNA Libraries Covering All k-mers

Orenstein, Y., & Berger, B. (2015) · Lecture notes in computer science · doi:10.1007/978-3-662-48221-6_23 · Cited by 1

Genome-wide identification of alternative splicing associated with histone deacetylase inhibitor in cutaneous T-cell lymphomas

Yu, S., Zhang, J., Ding, Y., Kang, X., & Pu, X. (2022) · Frontiers in Genetics · doi:10.3389/fgene.2022.937623 · Cited by 1

SRP54 mediates circadian rhythm-related, temperature-dependent gene expression in Drosophila

Li, Y., Yang, X., Zhao, Z., & Du, J. (2022) · Genomics · doi:10.1016/j.ygeno.2022.110512 · Cited by 1

Variant- and vaccination-specific alternative splicing profiles in SARS-CoV-2 infections

Lee, S., Furth, P. A., Hennighausen, L. G., & Lee, H. (2024) · iScience · doi:10.1016/j.isci.2024.109177 · Cited by 1

植物应答低温胁迫的分子调控网络

Fu, D., Ding, Y., Shi, Y., & Yang, S. (2025) · Chinese Science Bulletin (Chinese Version) · doi:10.1360/tb-2025-0144 · Cited by 1

A comprehensive splicing characterization of COL4A5 mutations and prognostic significance in a single cohort with X-linked alport syndrome

Li, H., Zhang, S., Zhou, W., Wang, C., Zhu, C., Zhao, S., Zhao, F., Jia, Z., Zhang, A., Zheng, B., et al. (2025) · Frontiers in Genetics · doi:10.3389/fgene.2025.1564343 · Cited by 1

APDCA: An accurate and effective method for predicting associations between RBPs and AS-events during epithelial-mesenchymal transition

He, Y., Bai, Z., Ching, W., Zou, Q., & Qiu, Y. (2025) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1013665 · Cited by 1

General Aspects Related to Nonsense Mutations

Benhabiles, H., Jia, J., & Lejeune, F. (2016) · Elsevier eBooks · doi:10.1016/b978-0-12-804468-1.00001-4 · Cited by 2

Allele-specific splicing effects on DKKL1 and ZNF419 transcripts in HeLa cells

Martin, G., Selçuklu, S. D., Schouest, K. R., Nembaware, V., McKeown, P. C., Seoighe, C., & Spillane, C. (2016) · Gene · doi:10.1016/j.gene.2016.11.004 · Cited by 1

Alternative RNA Splicing: New Approaches for Molecular Marker Discovery in Cancer

Villegas-Ruíz, V., & Juárez‐Méndez, S. (2018) · InTech eBooks · doi:10.5772/intechopen.74415 · Cited by 1

Epigenetic modifications and alternative pre-mRNA splicing in cancer

Yadav, P., Pandkar, M. R., & Shukla, S. (2023) · Elsevier eBooks · doi:10.1016/b978-0-12-823931-5.00011-6 · Cited by 1

First intron length in mammals is associated with 5’ exon skipping ratePreprint

Park, S. G., & Hannenhalli, S. S. (2015) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/024463 · Cited by 1

Alternative Splicing Changes As Drivers Of Cancer

Climente-González, H., Porta‐Pardo, E., Godzik, A., & Eyras, E. (2017) · Zenodo (CERN European Organization for Nuclear Research) · doi:10.5281/zenodo.793565 · Cited by 1

From mechanisms to therapy: RNA processing’s impact on human genetics

Penalva, L. O. F., & Sanford, J. R. (2017) · Human Genetics · doi:10.1007/s00439-017-1841-4 · Cited by 1

Termination of pre-mRNA splicing requires that the ATPase and RNA unwindase Prp43 acts on the catalytic snRNA U6Preprint

Toroney, R., Nielsen, K. H., & Staley, J. P. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/659029 · Cited by 1

Elucidating dynamics and regulation of alternative splicing in osteogenic differentiationPreprint

Wang, Y., Chun, R. F., Adhikari, S., Lopez, C. M., Henrich, M., Yacoubian, V., Lin, L., Adams, J. S., & Xing, Y. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.10.30.362384 · Cited by 1

Profiling the binding sites of RNA-binding protein by LACE-seqPreprint

Su, R., Wang, D., Cao, C., & Xue, Y. (2021) · Research Square · doi:10.21203/rs.3.pex-1499/v1 · Cited by 1

Meta-analysis of activated neurons reveals dynamic regulation of diverse classes of alternative splicingPreprint

Krick, K. S., Maroni, M. J., Korb, E., Lynch, K. W., & Heller, E. A. (2025) · Genome Research · doi:10.1101/gr.280082.124 · Cited by 1

The tumour suppressor RBM5 activates the helicase DHX15 to regulate splicingPreprint

Zhou, Z. H., Liu, S., Su, T., Huang, J., Lin, C.-H., Black, D. L., & Damianov, A. (2026) · Research Square · doi:10.64898/2026.03.26.714623 · Cited by 1

A unified framework for quantitative splicing and transcript predictionPreprint

Jaganathan, K., Chen, J., Liu, X., Zhang, Y., Kim, Y., Banerjee, A., Fiziev, P. P., Wilcox, N., Taskiran, I. I., Cai, Y., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.10.08.757673 · Cited by 1

Mechanisms of Post-transcriptional Gene Regulation

Arvola, R. M., Abshire, E. T., Bohn, J. A., & Goldstrohm, A. C. (2015) · Springer eBooks · doi:10.1007/978-3-319-25124-0_1

Alternative splicing and SR proteins in ABA-mediated stress responses

Lopes, F. L. (2016) · Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)

The regulation and function of mRNA cap methylation in pluripotency and differentiation

Grasso, L. (2015) · Discovery Research Portal (University of Dundee)

O impacto do diabetes Mellitus do tipo 1 sobre a ação da resposta proliferativa estimulada pela progesterona no ambiente uterino de camundongos.

dos Santos, R. D. (2015) · Digital Library of Theses and Dissertations (Universidade de São Paulo) · doi:10.11606/d.42.2016.tde-18042016-101410

Análise dos genes COL8A2 e SLC4A11 e da expansão intrônica TGC no gene TCF4 em famílias portadoras da distrofia endotelial corneana de Fuchs

Martins, C. (2016) · doi:10.47749/t/unicamp.2016.979568

Computational modeling of splicing regulation

Lin, H. (2017) · IUScholarWorks (Indiana University) · doi:10.7912/c2/900

HNRNPA1 promotes recognition of splice site decoys by U2AF2 in vivoPreprint

Howard, J. M., Lin, H., Kım, G., Draper, J. M., Haeussler, M., Katzman, S. J., Toloue, M., Liu, Y., & Sanford, J. R. (2017) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/175901 · Cited by 1

Modulation of Abnormal Splicing of RNA Diseases by Small Chemical Compounds

Kataoka, N. (2018) · Springer eBooks · doi:10.1007/978-981-10-8372-3_8

Large-scale study of rna processing alterations in multiple cancers

Singh, B. (2017) · LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas)

Transiently depleting RNPS1 leads to perdurable changes in alternative splicingPreprint

Barbier, J., Cloutier, A., Toutant, J., Durand, M., Lapointe, E., Thibault, P., & Chabot, B. (2018) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/344507

Signal transduction pathways regulating alternative splicing of tumor-related RAC1b

Gonçalves, V., Matos, P., Henriques, A. A., Pereira, J., & Jordan, P. (2017) · Annals of Oncology · doi:10.1093/annonc/mdx361.037

Insights into the regulation of RNA helicases by protein cofactors

Memet, I. (2019) · eDiss (Georg-August-Universität Göttingen) · doi:10.53846/goediss-7279

Functional impact of alternative splicing in vertebrate proteomes across tissues and cell types

Rodríguez, T., & Javier, J. (2018) · LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas)

Peer Review #1 of "The co-expression networks of differentially expressed RBPs with TFs and LncRNAs related to clinical TNM stages of cancers (v0.1)"

(2019) · PeerJ · doi:10.7287/peerj.7696v0.1/reviews/1

Peer Review #1 of "The co-expression networks of differentially expressed RBPs with TFs and LncRNAs related to clinical TNM stages of cancers (v0.2)"

(2019) · PeerJ · doi:10.7287/peerj.7696v0.2/reviews/1

Estudos funcionais e biológicos associados à interação de DUSP3 com a proteína HNRNPC1/C2

Ferruzo, P. Y. M. (2019) · Digital Library of Theses and Dissertations (Universidade de São Paulo) · doi:10.11606/d.46.2019.tde-10032020-133756

Splicing and Alternative Splicing and the Impact of Mechanics

Mierke, C. T. (2020) · Biological and medical physics, biomedical engineering · doi:10.1007/978-3-030-58532-7_13

RNA and aging

Mušo, M. (2020) · Elsevier eBooks · doi:10.1016/b978-0-12-817193-6.00015-7

Design of a GFP reporter for splicing analysis in mammalian cellsPreprint

Menezes, A. T., Nagasse, H. Y., & Coltri, P. P. (2020) · doi:10.21203/rs.3.rs-20486/v1

Hepatic peroxisome and its implications on cardiac function, inflammation and aging

Huang, K. (2020) · doi:10.31274/etd-20210114-64

MBNL1 and RBFOX1 co-regulate alternative splicing events transcriptome-wide through a conserved buffering mechanismPreprint

Hale, M. A., Ellis, J., Meng, R. C., McDaniel, S., Mahady, A. E., Wagner, S. D., Richardson, J. I., McConnell, O. L., Wang, E. T., & Berglund, J. A. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.04.20.440659

Interferon-α subtype treatment induces the repression of SRSF1 in HIV-1 target cells and affects HIV-1 post integration stepsPreprint

Sertznig, H., Roesmann, F., Bleekmann, B., Elsner, C., Santiago, M. L., Schuhenn, J., Benatzy, Y., Snodgrass, R. G., Eßer, S., Sutter, K., et al. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.06.11.448031

Steady-state joint distribution for first-order stochastic reaction kineticsPreprint

Li, Y., Jiang, D.-Q., & Jia, C. (2021) · arXiv (Cornell University) · doi:10.48550/arxiv.2102.04628

[Low-dose oral etoposide and subcutaneous injection of low-dose cytosine arabinoside (Et-A non i.v.) with or without minimum anthracycline for refractory acute non-lymphoblastic leukemia].

Tsukaguchi, M., Furukawa, Y., & Kitani, T. (1998) · PubMed

Mature Neurons’ sensitivity to oxidative stress is epigenetically programmed by alternative splicing and mRNA stabilityPreprint

Zhou, Y., Rashad, S., Tominaga, T., & Niizuma, K. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.12.25.472549

Identification of biological characteristics associated with RNA-binding proteins (RBPs) target sites

Ciamponi, F. E. (2018) · doi:10.47749/t/unicamp.2018.1096493

Analysis of Prognostic Associated Alternative Splicing Signatures in Breast Cancer

姜, 蔚. (2021) · Statistics and Applications · doi:10.12677/sa.2021.103035

Functional analyses of RNA helicases in human ribosome biogenesis

Choudhury, P. (2019) · eDiss (Georg-August-Universität Göttingen) · doi:10.53846/goediss-7708

Structural Insights into Early Spliceosome Assembly by cryo-EM

Zhang, Z. (2021) · doi:10.53846/goediss-9005

Mechanisms of action of intranuclear microRNAs. Part 2. MicroRNA-mediated regulation of ncRNA transcriptome and alternative splicing

Абатуров, А. Е., & Babуch, V. L. (2022) · CHILD`S HEALTH · doi:10.22141/2224-0551.17.1.2022.1492

Same same but different : a comprehensive functional analysis of SRSF3 and SRSF7 in the regulation of alternative polyadenylation within the 3’ untranslated region

Schwich, O. D. (2021) · Publication Server of Goethe University Frankfurt am Main (Goethe University Frankfurt) · doi:10.21248/gups.62686

Faculty Opinions recommendation of Rescue of recurrent deep intronic mutation underlying cell type-dependent quantitative NEMO deficiency.

Meyts, I., & Bucciol, G. (2020) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.734432148.793572288

Peer Review #3 of "The co-expression networks of differentially expressed RBPs with TFs and LncRNAs related to clinical TNM stages of cancers (v0.1)"

(2019) · PeerJ · doi:10.7287/peerj.7696v0.1/reviews/3

Peer Review #3 of "The co-expression networks of differentially expressed RBPs with TFs and LncRNAs related to clinical TNM stages of cancers (v0.2)"

(2019) · PeerJ · doi:10.7287/peerj.7696v0.2/reviews/3

Faculty Opinions recommendation of RNA editing in nascent RNA affects pre-mRNA splicing.

Mathews, D. H. (2018) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.733159660.793549157

Global donor and acceptor splicing site kinetics in human cells

Caizzi, L. (2020) · doi:10.26226/morressier.5ebd45acffea6f735881aedd

Splicing of Pre‐m RNA

Tu, C., & Tarn, W. (2015) · Wiley eBooks · doi:10.1002/9780470015902.a0005037.pub3

Peer Review #2 of "The co-expression networks of differentially expressed RBPs with TFs and LncRNAs related to clinical TNM stages of cancers (v0.1)"

(2019) · PeerJ · doi:10.7287/peerj.7696v0.1/reviews/2

Faculty Opinions recommendation of Rapid and dynamic alternative splicing impacts the arabidopsis cold response transcriptome.

Schubert, D. S. P. (2019) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.733234891.793557089

Structural evolution of the tissue-specific U2AF2 paralog and alternative splicing factor LS2Preprint

Kawale, A. A., Taliaferro, J. M., Kang, H.-S., Hartmüller, C., Geerlof, A., Stehle, R., Burge, C. B., Rio, D. C., & Sattler, M. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.08.15.252130 · Cited by 1

Exploring an RNA binding proteins-associated prognostic model for Gastric CancerPreprint

Liu, M., Xie, J., Luo, X., Luo, Y., Liu, S., & Han, Z. (2020) · doi:10.21203/rs.3.rs-33114/v1

Understanding splicing regulation through RNA splicing maps

Witten, J. T., & Ule, J. (2011) · Trends in Genetics · doi:10.1016/j.tig.2010.12.001 · Cited by 289

Experimental strategies for studying RNA-binding proteins and their complexes in alternative mRNA splicing

Srivastava, D., Ramakrishnan, L. S., Shadija, Y., Sandeep, G., & Misra, A. (2026) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/bs.mie.2026.07.031

Mechanism of an alternative splicing switch mediated by cell-specific and general splicing regulatorsPreprint

Yang, Y. A., Lee, G. C., Nakagaki-Silva, E. E., Huang, Y., Peacey, M., Partridge, R., Gooding, C., & Smith, C. W. J. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.01.23.525191 · Cited by 1

Position-dependent effects of RNA-binding proteins in the context of co-transcriptional splicing

Horn, T., Gosliga, A. R., Li, C., Enculescu, M., & Legewie, S. (2023) · npj Systems Biology and Applications · doi:10.1038/s41540-022-00264-3 · Cited by 26

Regulation of alternative splicing in Drosophila by 56 RNA binding proteinsPreprint

Brooks, A. N., Duff, M. O., May, G. E., Yang, L. C., Bolisetty, M. T., Landolin, J. M., Wan, K., Sandler, J. E., Booth, B. W., Celniker, S., et al. (2015) · Genome Research · doi:10.1101/gr.192518.115 · Cited by 84