Context-dependent control of alternative splicing by RNA-binding proteins

Development and Applications of CRISPR-Cas9 for Genome Engineering

Hsu, P. D., Lander, E. S., & Zhang, F. (2014) · Cell · doi:10.1016/j.cell.2014.05.010 · Cited by 5,762

Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP

Hafner, M., Landthaler, M., Burger, L., Khorshid, M., Hausser, J., Berninger, P., Rothballer, A., Ascano, M., Jungkamp, A.-C., Munschauer, M., et al. (2010) · Cell · doi:10.1016/j.cell.2010.03.009 · Cited by 2,873

Mechanisms of Alternative Pre-Messenger RNA Splicing

Black, D. L. (2003) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.72.121801.161720 · Cited by 2,704

The Spliceosome: Design Principles of a Dynamic RNP Machine

Wahl, M. C., Will, C. L., & Lührmann, R. (2009) · Cell · doi:10.1016/j.cell.2009.02.009 · Cited by 2,665

Expansion of the eukaryotic proteome by alternative splicing

Nilsen, T. W., & Graveley, B. R. (2010) · Nature · doi:10.1038/nature08909 · Cited by 2,270

Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins

Castello, A., Fischer, B., Eichelbaum, K., Horos, R., Beckmann, B. M., Strein, C., Davey, N. E., Humphreys, D. T., Preiss, T., Steinmetz, L. M., et al. (2012) · Cell · doi:10.1016/j.cell.2012.04.031 · Cited by 2,132

Frequent pathway mutations of splicing machinery in myelodysplasia

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Cell-free Formation of RNA Granules: Low Complexity Sequence Domains Form Dynamic Fibers within Hydrogels

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A compendium of RNA-binding motifs for decoding gene regulation

Ray, D., Kazan, H., Cook, K. B., Weirauch, M. T., Najafabadi, H. S., Li, X., Gueroussov, S., Albu, M., Zheng, H., Yang, A., et al. (2013) · Nature · doi:10.1038/nature12311 · Cited by 1,480

Mutations in prion-like domains in hnRNPA2B1 and hnRNPA1 cause multisystem proteinopathy and ALS

Kim, H. J., Kim, N. C., Wang, Y., Scarborough, E. A., Moore, J., Diaz, Z., MacLea, K. S., Freibaum, B. D., Li, S., Molliex, A., et al. (2013) · Nature · doi:10.1038/nature11922 · Cited by 1,478

The role of the heterogeneous nuclear ribonucleoprotein (hnRNP) Hrb27C in regulating lipid storage in the Drosophila fat body

Bhogal, J. K., Kanaskie, J. M., & DiAngelo, J. R. (2020) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2020.01.064 · Cited by 6

Genome-Wide Analyses of Prognostic and Therapeutic Alternative Splicing Signatures in Bladder Urothelial Carcinoma

Fan, Z., Zhang, Z., Piao, C., Liu, Z., Wang, Z., & Kong, C. (2021) · Frontiers in Oncology · doi:10.3389/fonc.2021.626858 · Cited by 6

Global Exploration of RNA-Binding Proteins in Exercise-Induced Adult Hippocampal Neurogenesis: A Transcriptome Meta-analysis and Computational Study

Nishanth, M. J., & Jha, S. (2022) · Biochemical Genetics · doi:10.1007/s10528-022-10230-7 · Cited by 6

HiFENS: high-throughput FISH detection of endogenous pre-mRNA splicing isoforms

Shilo, A., Pegoraro, G., & Misteli, T. (2022) · Nucleic Acids Research · doi:10.1093/nar/gkac869 · Cited by 6

PCB: A pseudotemporal causality-based Bayesian approach to identify EMT-associated regulatory relationships of AS events and RBPs during breast cancer progression

Sun, L., Qiu, Y., Ching, W., Zhao, P., & Zou, Q. (2023) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1010939 · Cited by 6

Toolbox murders: putting genes in their epigenetic and ecological contexts

Pradeu, T. (2015) · Biology & Philosophy · doi:10.1007/s10539-014-9471-x · Cited by 6

The RNA Binding Protein Bcas2 is Required for Antibody Class Switch in Activated‐B Cells

Chen, Y., Sun, S., Lu, C., Li, Y., Fang, B., Tang, X., Li, X., Yu, W., Lei, Y., Sun, L., et al. (2025) · Exploration · doi:10.1002/exp.70015 · Cited by 5

Nuclear accumulation of YTHDF1 regulates mRNA splicing in the DNA damage response

Hou, J., Gao, Y., Han, B., Yan, S., Wei, S., & Gao, X. (2025) · Science Advances · doi:10.1126/sciadv.ado7660 · Cited by 5

BAF60C links nucleolar stress to β cell dysfunction in type 2 diabetes through controlling Reg3b mRNA decay

Yang, Z., Zhu, S., Lyu, C.-A., Fu, H., Chen, W., Qiu, X., Zhang, W., Yu, T., Yang, M., Zhang, Z. Y., et al. (2026) · Developmental Cell · doi:10.1016/j.devcel.2026.02.006 · Cited by 5

Recent insights into the role of Akt in CD4 T-cell activation and differentiation: alternative splicing and beyond

White, T. L. A., Jin, Y., Gable, M. J., & Morel, P. A. (2023) · Immunometabolism · doi:10.1097/in9.0000000000000015 · Cited by 5

Modulatory role of RNA helicases in MBNL-dependent alternative splicing regulation

Taylor, K., Piasecka, A., Kajdasz, A., Brzęk, A., Espinoza, M. P., Bourgeois, C. F., Jankowski, A., Borowiak, M., Raczyńska, K. D., Sznajder, Ł. J., et al. (2023) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-023-04927-0 · Cited by 5

Microglia specific alternative splicing alterations in multiple sclerosis

Qi, C., Ren, H., & Fan, Y. (2024) · Aging · doi:10.18632/aging.206045 · Cited by 5

Biofluid-Derived Exosomal LncRNAs: Their Potential in Obesity and Related Comorbidities

Ngowi, E. E., Lu, T., Liu, Q., Xie, X., Wang, N., Luo, L., Deng, L., Zhou, Y., Zhang, Z., & Qiao, A. (2024) · Biology · doi:10.3390/biology13120976 · Cited by 5

Invention of an oral medication for cardiac Fabry disease caused by RNA mis-splicing

Awaya, T., Ajiro, M., Kobayashi, H., Sawada, T., Gotanda, K., Noji, T., Takemoto, N., Iida, K., Saito, M. K., Niu, D., et al. (2025) · Science Advances · doi:10.1126/sciadv.adt9695 · Cited by 5

Alternative splicing of the Snap23 microexon is regulated by MBNL, QKI, and RBFOX2 in a tissue-specific manner and is altered in striated muscle diseases

Gentile, G. M., Blue, R. E., Goda, G. A., Guzmán, B. B., Szymanski, R. A., Lee, E. Y., Engels, N. M., Hinkle, E. R., Wiedner, H. J., Bishop, A. N., et al. (2025) · RNA Biology · doi:10.1080/15476286.2025.2491160 · Cited by 5

Viral Modulation of Host Splicing

Begg, B. E., Ferretti, M., Tracey, M. P., & Lynch, K. W. (2025) · Annual Review of Virology · doi:10.1146/annurev-virology-092623-102539 · Cited by 5

CircPSD3 aggravates tumor progression by maintaining TCA cycle and mitochondrial function via regulating SUCLG2 in thyroid carcinoma

Sun, Y., Han, B., Ge, J., Huo, Z., Li, J., Lin, B., Du, X., Zhang, Y., Weng, H., Yu, S., et al. (2025) · Cell Death and Disease · doi:10.1038/s41419-025-07856-x · Cited by 5

RAPDOR: Using Jensen-Shannon Distance for the computational analysis of complex proteomics datasets

Hemm, L., Rabsch, D., Ropp, H. R., Reimann, V., Gerth, P., Bartel, J., Brenes-Álvarez, M., Maaß, S., Becher, D., Hess, W. R., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-64086-7 · Cited by 5

A basic framework to explain splice-site choice in eukaryotes

Dent, C., Prodic, S., Balakrishnan, A., Chhabra, A., Georges, J. D. G., Mukherjee, S., Coutts, J., Gitonobel, M., Sarwade, R. D., Rosenbluh, J., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-63622-9 · Cited by 5

Splicing dysfunction and disease: The case of granulopoiesis

Keightley, M.-C., & Lieschke, G. J. (2017) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2017.08.048 · Cited by 5

The Splicing Factor PTBP1 Represses TP63 γ Isoform Production in Squamous Cell Carcinoma

Taylor, W., Deschamps, S., Reboutier, D., Paillard, L., Méreau, A., & Audic, Y. (2022) · Cancer Research Communications · doi:10.1158/2767-9764.crc-22-0350 · Cited by 5

Functional requirement of alternative splicing in epithelial-mesenchymal transition of pancreatic circulating tumor

Xiao, L., Sun, H., Cheng, R., Yang, R., Jin, X., Xu, Z., Cai, Y., Yang, Y., Pang, F., Xue, G., et al. (2024) · Molecular Therapy — Nucleic Acids · doi:10.1016/j.omtn.2024.102129 · Cited by 5

Global Approaches to Alternative Splicing and Its Regulation—Recent Advances and Open Questions

Hsiao, Y.-H. E., Cass, A. A., Bahn, J. H., Lin, X., & Xiao, X. G. (2015) · Translational bioinformatics · doi:10.1007/978-94-017-7450-5_2 · Cited by 5

SOX2 suppresses the mobility of urothelial carcinoma by promoting the expression of S100A14

Lee, M., Hsu, W.-T., Deng, Y.-F., Lin, C.-W., Weng, E.-Y., Chang, H.-P., Wu, S.-F., & Li, C. (2016) · Biochemistry and Biophysics Reports · doi:10.1016/j.bbrep.2016.06.016 · Cited by 5

PTBP 1 acts as a dominant repressor of the aberrant tissue‐specific splicing of ISCU in hereditary myopathy with lactic acidosis

Rawcliffe, D. F. R., Österman, L., Nordin, A., & Holmberg, M. (2018) · Molecular Genetics & Genomic Medicine · doi:10.1002/mgg3.413 · Cited by 5

Using secondary structure to predict the effects of genetic variants on alternative splicing

Wang, R., Wang, Y., & Hu, Z. (2019) · Human Mutation · doi:10.1002/humu.23790 · Cited by 5

RNA Binding Proteins and Non-coding RNA’s in Cardiovascular Diseases

Bansal, P., & Arora, M. (2020) · Advances in experimental medicine and biology · doi:10.1007/978-981-15-1671-9_5 · Cited by 5

Steady-state joint distribution for first-order stochastic reaction kinetics

Li, Y., Jiang, D.-Q., & Jia, C. (2021) · Physical review. E · doi:10.1103/physreve.104.024408 · Cited by 5

EWS splicing regulation contributes to balancingFoxp1isoforms required for neuronal differentiation

Verdile, V., Svetoni, F., Rosa, P. L., Ferrante, G., Cesari, E., Sette, C., & Paronetto, M. P. (2022) · Nucleic Acids Research · doi:10.1093/nar/gkac154 · Cited by 5

Splicing annotation of endometrial cancer GWAS risk loci reveals potentially causal variants and supports a role for NF1 and SKAP1 as susceptibility genes

Canson, D. M., O’Mara, T. A., Spurdle, A. B., & Glubb, D. M. (2023) · Human Genetics and Genomics Advances · doi:10.1016/j.xhgg.2023.100185 · Cited by 5

Analysis of the impact of DGAT1 p.M435L and p.K232A variants on pre-mRNA splicing in a full-length gene assay

Gaïani, N., Bourgeois‐Brunel, L., Rocha, D., & Boulling, A. (2023) · Scientific Reports · doi:10.1038/s41598-023-36142-z · Cited by 5

Low‐density lipoprotein receptor‐related protein 6 regulates alternative pre‐ mRNA splicing

Yuan, T., Wang, S., Hu, C., Wu, Y., Liang, D., Li, L., Liu, Y., Li, J., & Chen, Y. (2018) · Journal of Cellular and Molecular Medicine · doi:10.1111/jcmm.13682 · Cited by 5

Vemurafenib-resistant BRAF selects alternative branch points different from its wild-type BRAF in intron 8 for RNA splicing

Ajiro, M., & Zheng, Z. (2015) · Cell & Bioscience · doi:10.1186/s13578-015-0061-7 · Cited by 5

Regulation of Flowering Time and Other Developmental Plasticities by 3’ Splicing Factor-Mediated Alternative Splicing in Arabidopsis thaliana

Lee, K. C., Kim, Y., Kim, J., Lee, H., & Lee, J. (2023) · Plants · doi:10.3390/plants12193508 · Cited by 4

Role of RNA-binding Proteins in Regulating Cell Adhesion and Progression of the Atherosclerotic Plaque and Plaque Erosion

Cao, Y., Yang, Y., Guo, C., Zong, J., Li, M., Li, X., & Yu, T. (2024) · Current Atherosclerosis Reports · doi:10.1007/s11883-024-01250-2 · Cited by 4

Targeting HASPIN kinase disrupts SR protein–mediated RNA splicing and synergizes with BCL-2 inhibitor venetoclax in AML

Liu, M., Yan, M., Davis, A. G., Stoner, S. A., Ball, E. D., & Zhang, D. (2025) · Blood Neoplasia · doi:10.1016/j.bneo.2025.100107 · Cited by 4

Treponema pallidum Protein Tp0136 Induces Spheroidization of Vascular Endothelial Cells, Resulting in Widened Intercellular Junctions and Enhanced Vascular Permeability

Lin, Y., Luo, X., Shen, X., Fu, X., Lin, L., & Yang, T. (2025) · Small Science · doi:10.1002/smsc.202500046 · Cited by 4

Alternative Splicing and CaV ‐Associated Channelopathies

Munyao, W., Rahman, M. M., Sabzanov, S., Chu, E. H., Wang, R., Wang, Z., Yu, Y., & Ruggiu, M. (2025) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.70016 · Cited by 4

Alternative Splicing of Serum Response Factor Reveals Isoform-Specific Remodeling in Cardiac Diseases

Abdi, S. A. H., Azhar, G., Zhang, X., Sharma, S., Hafeez, M., & Wei, J. Y. (2025) · Genes · doi:10.3390/genes16080947 · Cited by 4

CAR-SPLASH identifies nascent pre-mRNA structures implicated in kinetic coupling and alternative splicing

Shenasa, H., Fong, N., Erickson, B., Iosub, I. A., Ule, J., & Bentley, D. L. (2025) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2504034122 · Cited by 4

Alternative Splicing: A Critical Regulator in Human Bone Biology and Tumor Progression

Cao, L., Hu, Y., Jia, K., Ruiz-Cardozo, M. A., Chen, E., Yang, J., Shao, Z., Tine, B. A. V., & Wu, W. (2025) · Research · doi:10.34133/research.0977 · Cited by 4

RBFOX2: An RNA-binding protein with alternative splicing and non-alternative splicing regulatory functions

Wang, W., Zhang, Y., Liu, S., Liao, S., He, J., Luo, G., He, Q., & Zhou, Y. (2025) · Experimental and Molecular Pathology · doi:10.1016/j.yexmp.2025.105007 · Cited by 4

The evolving role of alternative splicing in cancer stem cell plasticity: From mechanisms to clinical opportunities

Tarmizi, M. D. A., & Ramasamy, T. S. (2025) · Critical Reviews in Oncology/Hematology · doi:10.1016/j.critrevonc.2025.105020 · Cited by 4

Cardioprotective role of RBFox1 in myocardial infarction-induced heart failure

He, M., Tay, W. T., Song, N., Liu, T., Ren, S. V., Zhu, C., Onubogu, N., Biler, O., Tan, J. E., Keezer, C., et al. (2025) · Cardiovascular Research · doi:10.1093/cvr/cvaf206 · Cited by 4

Aurora kinase A regulates cancer-associated RNA aberrant splicing in breast cancer

Li, S., Qi, Y., Yu, J., Hao, Y., Xu, L., Ding, X., Zhang, M., & Geng, J. (2023) · Heliyon · doi:10.1016/j.heliyon.2023.e17386 · Cited by 4

PAIP1 binds to pre-mRNA and regulates alternative splicing of cancer pathway genes including VEGFA

Zheng, J., Zhang, X., Xue, Y., Shao, W., Wei, Y., Mi, S., Yang, X., Hu, L., Zhang, Y., & Ming, L. (2024) · BMC Genomics · doi:10.1186/s12864-024-10530-9 · Cited by 4

Expression frequency ofc‐kitisoforms and its prognostic potential in canine mammary tumours

Chen, Y., Liao, J., Chang, S., & Hsu, W. (2019) · Veterinary and Comparative Oncology · doi:10.1111/vco.12549 · Cited by 4

A spotter’s guide to SNPtic exons: The common splice variants underlying some SNP–phenotype correlations

Keegan, N., & Fletcher, S. (2021) · Molecular Genetics & Genomic Medicine · doi:10.1002/mgg3.1840 · Cited by 4

Functional Role of RBP in Osteosarcoma: Regulatory Mechanism and Clinical Therapy

Que, Z., Yang, K., Wang, N., Li, S., & Li, T. (2023) · Analytical Cellular Pathology · doi:10.1155/2023/9849719 · Cited by 4

The heterogeneous nuclear ribonucleoprotein (hnRNP) glorund functions in the Drosophila fat body to regulate lipid storage and transport

Kolasa, A. M., Bhogal, J. K., & DiAngelo, J. R. (2021) · Biochemistry and Biophysics Reports · doi:10.1016/j.bbrep.2021.100919 · Cited by 4

RNA Targeting in Inherited Neuromuscular Disorders: Novel Therapeutic Strategies to Counteract Mis-Splicing

Verdile, V., Gloria, G., Ferrante, G., & Paronetto, M. P. (2021) · Cells · doi:10.3390/cells10112850 · Cited by 4

Molecular and genetic dissection of recursive splicing

Joseph, B. J., Scala, C., Kondo, S., & Lai, E. C. (2021) · Life Science Alliance · doi:10.26508/lsa.202101063 · Cited by 4

Knowledge mapping of alternative splicing of cancer from 2012 to 2021: A bibliometric analysis

Tian, B., Bian, Y., Bian, D.-J., Gao, Y., Zhang, X., Zhou, S., Zhang, Y. H., Pang, Y., Li, Z., & Wang, L. (2022) · Frontiers in Oncology · doi:10.3389/fonc.2022.1068805 · Cited by 4

The emerging role of PTBP1 in human cancer: novel prognostic factor in non-muscle invasive bladder cancer

Bielli, P., Stasi, S. M. D., & Sette, C. (2018) · Translational Andrology and Urology · doi:10.21037/tau.2018.12.01 · Cited by 4

Non-canonical splice junction processing increases the diversity of RBFOX2 splicing isoforms

Choi, S., Cho, N., & Kim, K. K. (2022) · The International Journal of Biochemistry & Cell Biology · doi:10.1016/j.biocel.2022.106172 · Cited by 4

The Junction Usage Model (JUM): A method for comprehensive annotation-free analysis of alternative pre-mRNA splicing patternsPreprint

Wang, Q., & Rio, D. C. (2017) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/116863 · Cited by 4

Studying the Genetics of Behavior in the Genomics Era

Kent, C. F., Tiwari, T., Rose, S. A., Patel, H., Conflitti, I. M., & Zayed, A. (2018) · Elsevier eBooks · doi:10.1016/b978-0-12-809633-8.90054-2 · Cited by 4

PDGFRα signaling regulates Srsf3 transcript binding to affect PI3K signaling and endosomal trafficking

Forman, T. E., Sajek, M. P., Larson, E. D., Mukherjee, N., & Fantauzzo, K. A. (2024) · eLife · doi:10.7554/elife.98531 · Cited by 4

Generative Design of Cell Type-Specific RNA Splicing Elements for Programmable Gene RegulationPreprint

Chen, X. D., Jim, M., Vallurupalli, M., Cao, K., Torres, A. N., Leong, W., Zhang, Y., Wollensak, D., Gong, Q., Sun, J., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.11.05.686847 · Cited by 5

Generative modeling for RNA splicing prediction and designPreprint

Wu, D., Maus, N., Jha, A., Yang, K., Wales-McGrath, B. D., Jewell, S., Tangiyan, A., Choi, P. S., Gardner, J. R., & Barash, Y. (2025) · eLife · doi:10.7554/elife.106043.2 · Cited by 4

Rbm3 deficiency leads to transcriptome-wide splicing alterations

Erkelenz, S., Grzonka, M., Papadakis, A., Schaal, H., Hoeijmakers, J. H. J., & Gyenis, Á. (2024) · RNA Biology · doi:10.1080/15476286.2024.2413820 · Cited by 3

Integration of proteomics profiling data to facilitate discovery of cancer neoantigens: a survey

Luo, S., Peng, H., Shi, Y., Cai, J., Zhang, S., Shao, N., & Li, J. (2025) · Briefings in Bioinformatics · doi:10.1093/bib/bbaf087 · Cited by 4

OpenASO: RNA Rescue—designing splice-modulating antisense oligonucleotides through community science

Tse, V., Guiterrez, M., Townley, J., Romano, J., Pearl, J., Chacaltana, G., Participants, E., Das, R., Sanford, J. R., & Stone, M. D. (2025) · RNA · doi:10.1261/rna.080288.124 · Cited by 3

Identification and prognostic potential of lactylation-related genes in sepsis: implications of the RBM25-acly axis

Yu, L., Zhang, T., Zhou, L. P., Huang, Y., Li, J., Xu, H., & Wu, X. (2025) · International Immunopharmacology · doi:10.1016/j.intimp.2025.115177 · Cited by 3

HIV-1 infection induces Vif-mediated SUMOylation of host RNA splicing factors important for proper viral RNA splicing

Kelenis, D. P., Johnson, J. R., Sidoli, S., Emery, A., Swanstrom, R., Hawkins, L. J., Mckie, K., Pawar, T., & Goff, S. P. (2026) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2532659123 · Cited by 3

Key pituitary miRNAs mediate the expression of pig GHRHR splice variants by regulating splice factors

Teng, Z., Hao, L., Yang, R., Song, J., Wang, Z., Jiao, Y., Fang, J., Zheng, S., Ma, Z., Chen, X., et al. (2022) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2022.03.070 · Cited by 3

Alternative Splicing in Human Biology and Disease

Jutzi, D., & Ruepp, M. (2022) · Methods in molecular biology · doi:10.1007/978-1-0716-2521-7_1 · Cited by 4

Alternative Splicing at the Crossroad of Inflammatory Bowel Diseases and Colitis-Associated Colon Cancer

Matos, P., & Jordan, P. (2025) · Cancers · doi:10.3390/cancers17020219 · Cited by 3

Generative modeling for RNA splicing prediction and design

Wu, D., Maus, N., Jha, A., Yang, K., Wales-McGrath, B. D., Jewell, S., Tangiyan, A., Choi, P. S., Gardner, J. R., & Barash, Y. (2026) · eLife · doi:10.7554/elife.106043.3 · Cited by 3

Identification of UBA7 expression downregulation in myelodysplastic neoplasm with SF3B1 mutations

Alatawi, S. M., Alzahrani, O. R., Alatawi, F. A., Almazni, I. A., Almotiri, A., & Almsned, F. M. (2025) · Scientific Reports · doi:10.1038/s41598-025-95738-9 · Cited by 3

Incomplete paralog compensation generates selective dependency on TRA2A in cancer

Lee, A. R., Tangiyan, A., Singh, I., & Choi, P. S. (2025) · PLoS Genetics · doi:10.1371/journal.pgen.1011685 · Cited by 3

RBPMS and RBPMS2 Cooperate to Safeguard Cardiac Splicing

Wu, T., Chen, Z., Gao, C., Stanley, E. V., Zhang, Z., Gu, Y., Zhou, X., & Chen, J. (2025) · Circulation Research · doi:10.1161/circresaha.125.326948 · Cited by 3

Competition for the conserved branch point sequence influences physiological outcomes in pre-mRNA splicing

de Castro, K. L. P., Abril, J., Liao, K., Hao, H., Donohue, J. P., Russell, W. K., & Fagg, W. S. (2026) · eLife · doi:10.7554/elife.103167.3 · Cited by 3

A novel RNA-binding activity of ECD contributes to U5 snRNP stability and pre-mRNA splicing

Raza, M., Rajan, A. R., Kalluchi, A., Mohapatra, B., Saleem, I., Kennedy, B. B., Bhakat, K. K., Band, H., Rowley, M. J., & Band, V. (2026) · Nucleic Acids Research · doi:10.1093/nar/gkag732 · Cited by 3

Integrating 13 Microarrays to Construct a 6 RNA-binding proteins Prognostic Signature for Gastric Cancer patients

Zhou, L., Zhou, Q., Wu, Y., & Xin, L. (2021) · Journal of Cancer · doi:10.7150/jca.57225 · Cited by 3

Roles of Physicochemical and Structural Properties of RNA-Binding Proteins in Predicting the Activities of Trans-Acting Splicing Factors with Machine Learning

Zhu, L., & Li, W. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23084426 · Cited by 3

Integrating machine learning to construct aberrant alternative splicing event related classifiers to predict prognosis and immunotherapy response in patients with hepatocellular carcinoma

Liu, W., Zhao, S., Xu, W., Xiang, J., Li, C., Li­, ­., Ding, H., Zhang, H., Zhang, Y., Huang, H., et al. (2022) · Frontiers in Pharmacology · doi:10.3389/fphar.2022.1019988 · Cited by 3

mRNA-Seq of testis and liver tissues reveals a testis-specific gene and alternative splicing associated with hybrid male sterility in dzo

Hong, R., Wu, J., Chen, X., Zhang, Z., Liu, X., Li, M., Zuo, F., & Zhang, G. (2024) · Journal of Animal Science · doi:10.1093/jas/skae091 · Cited by 3

Cell-Type–Specific Splicing of Transcription Regulators and Ptbp1 by Rbfox1/2/3 in the Developing Neocortex

Ruan, X., Hu, K., Yang, Y., Yang, R., Tseng, E., Kang, B., Kauffman, A., Zhong, R., & Zhang, X. (2024) · Journal of Neuroscience · doi:10.1523/jneurosci.0822-24.2024 · Cited by 3

Transformer2 proteins protect breast cancer cells from accumulating replication stress by ensuring productive splicing of checkpoint kinase 1

Best, A. J., James, K., Hysenaj, G., Tyson-Capper, A. J., & Elliott, D. J. (2015) · Frontiers of Chemical Science and Engineering · doi:10.1007/s11705-015-1540-4 · Cited by 3

Calculating the most likely intron splicing orders in S. pombe, fruit fly, Arabidopsis thaliana, and humans

Li, M. (2020) · BMC Bioinformatics · doi:10.1186/s12859-020-03818-6 · Cited by 3

A Quantitative Profiling Tool for Diverse Genomic Data Types Reveals Potential Associations between Chromatin and Pre-mRNA Processing

Kremsky, I., Bellora, N., & Eyras, E. (2015) · PLoS ONE · doi:10.1371/journal.pone.0132448 · Cited by 3

Development of Transcriptome Analysis Methods

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An RBPMS-driven splicing regulatory axis including MBNL1, RBFOX2, and QK promotes smooth muscle cell contractile identity

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Regulation of Eukaryotic Gene Expression Through Functional Coupling Between Alternative Splicing and Nonsense-mediated Decay

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New SHH and Known SIX3 Variants in a Series of Latin American Patients with Holoprosencephaly

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Tnpo3 controls splicing of the pre-mRNA encoding the canonical TCR α chain of iNKT cells

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Mechanism of an alternative splicing switch mediated by cell-specific and general splicing regulatorsPreprint

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