Systems biology and gene networks in neurodevelopmental and neurodegenerative disorders

Parikshak, Neelroop N., Gandal, Michael J., Geschwind, Daniel H.·2015·Nature Reviews Genetics

Cites (225)

Items 201–225 of 225

  1. Functional Genomic Analyses Identify Pathways Dysregulated by Progranulin Deficiency, Implicating Wnt Signaling
    Rosen, Ezra Y., Wexler, Eric M., Versano, Revital, Coppola, Giovanni, Gao, Fuying, Winden, Kellen D., Oldham, Michael C., Martens, Lauren Herl, Zhou, Ping, Farese, Robert V. et al. · 2011 · Neuron
  2. Synaptic changes in the brain of subjects with schizophrenia
    Gábor Faludi, Károly Mirnics · 2011 · International Journal of Developmental Neuroscience
  3. Variations in the transcriptome of Alzheimer's disease reveal molecular networks involved in cardiovascular diseases
    Ray, Monika, Ruan, Jianhua, Zhang, Weixiong · 2008 · Genome Biology
  4. A simple method for assessing sample sizes in microarray experiments
    Robert John Tibshirani · 2006 · BMC Bioinformatics
  5. The organization of the transcriptional network in specific neuronal classes
    Winden, Kellen D, Oldham, Michael C, Mirnics, Karoly, Ebert, Philip J, Swan, Christo H, Levitt, Pat, Rubenstein, John L, Horvath, Steve, Geschwind, Daniel H · 2009 · Molecular Systems Biology
  6. Molecular adaptations of striatal spiny projection neurons during levodopa-induced dyskinesia
    Myriam Heiman, Adrian M Heilbut, Veronica Francardo, Ruth Kulicke, Robert J. Fenster, Eric D. Kolaczyk, Jill P. Mesirov, Dalton James Surmeier, Maria Angela Cenci, Paul Greengard · 2014 · Proceedings of the National Academy of Sciences
  7. Analytical tools and current challenges in the modern era of neuroepigenomics
    Maze, Ian, Shen, Li, Zhang, Bin, Garcia, Benjamin A, Shao, Ningyi, Mitchell, Amanda, Sun, HaoSheng, Akbarian, Schahram, Allis, C David, Nestler, Eric J · 2014 · Nature Neuroscience
  8. Single-Cell Gene Expression Analysis: Implications for Neurodegenerative and Neuropsychiatric Disorders
    Ginsberg, Stephen D., Elarova, Irina, Ruben, Marc, Tan, Fengzhu, Counts, Scott E., Eberwine, James H., Trojanowski, John Q., Hemby, Scott E., Mufson, Elliott J., Che, Shaoli · 2004 · Neurochemical Research
  9. PBK/TOPK, a Proliferating Neural Progenitor-Specific Mitogen-Activated Protein Kinase Kinase
    Dougherty, J. D., Garcia, A. D. R., Nakano, I., Livingstone, M., Norris, B., Polakiewicz, R., Wexler, E. M., Sofroniew, M. V., Kornblum, H. I., Geschwind, D. H. · 2005 · The Journal of Neuroscience
  10. MicroRNA networks surrounding APP and amyloid-β metabolism — Implications for Alzheimer's disease
    Nicole Schönrock, Miriam Matamales, Lars Matthias Ittner, Jürgen Götz · 2011 · Experimental Neurology
  11. Translational profiling of hypocretin neurons identifies candidate molecules for sleep regulation
    Jasbir Singh Dalal, Jee Hoon Roh, Susan E. Maloney, Afua Akuffo, Samir Shah, Han Yuan, Brie Wamsley, Wendell B. Jones, Cristina de Guzman Strong, Paul A. Gray et al. · 2013 · Genes & Development
  12. The Disruption ofCelf6, a Gene Identified by Translational Profiling of Serotonergic Neurons, Results in Autism-Related Behaviors
    Joseph D. Dougherty, Susan E. Maloney, David F. Wozniak, Michael A. Rieger, Lisa I. Sonnenblick, Giovanni Coppola, Nathaniel G. Mahieu, Juliet Zhang, Jinlu Cai, Gary J. Patti et al. · 2013 · Journal of Neuroscience
  13. A map of human protein interactions derived from co‐expression of human mRNAs and their orthologs
    Ramani, Arun K, Li, Zhihua, Hart, G Traver, Carlson, Mark W, Boutz, Daniel R, Marcotte, Edward M · 2008 · Molecular Systems Biology
  14. Normalizing RNA-Sequencing Data by Modeling Hidden Covariates with Prior Knowledge
    Sara Mostafavi, Alexis J. Battle, Xiaowei Zhu, Alexander Eckehart Urban, Douglas F. Levinson, Stephen B. Montgomery, Daphne Koller · 2013 · PLoS ONE
  15. The Roles of FMRP-Regulated Genes in Autism Spectrum Disorder: Single- and Multiple-Hit Genetic Etiologies
    Steinberg, Julia, Webber, Caleb · 2013 · The American Journal of Human Genetics
  16. Annotation of loci from genome-wide association studies using tissue-specific quantitative interaction proteomics
    The QT Interval International GWAS Consortium (QT-IGC), Lundby, Alicia, Rossin, Elizabeth J, Steffensen, Annette B, Acha, Moshe Rav, Newton-Cheh, Christopher, Pfeufer, Arne, Lynch, Stacey N, Olesen, Søren-Peter, Brunak, Søren et al. · 2014 · Nature Methods
  17. Genome-Wide Analysis of a Wnt1-Regulated Transcriptional Network Implicates Neurodegenerative Pathways
    Wexler, Eric M., Rosen, Ezra, Lu, Daning, Osborn, Gregory E., Martin, Elizabeth, Raybould, Helen, Geschwind, Daniel H. · 2011 · Science Signaling
  18. Network Topologies and Convergent Aetiologies Arising from Deletions and Duplications Observed in Individuals with Autism
    Noh, Hyun Ji, Ponting, Chris P., Boulding, Hannah C., Meader, Stephen, Betancur, Catalina, Buxbaum, Joseph D., Pinto, Dalila, Marshall, Christian R., Lionel, Anath C., Scherer, Stephen W. et al. · 2013 · PLoS Genetics
  19. Systems biology in neuroscience: bridging genes to cognition
    Grant, Seth GN · 2003 · Current Opinion in Neurobiology
  20. Chromatin regulators, phenotypic robustness, and autism risk
    Suliman, Reut, Ben-David, Eyal, Shifman, Sagiv · 2014 · Frontiers in Genetics
  21. Neurocognitive Phenotypes and Genetic Dissection of Disorders of Brain and Behavior
    Congdon, Eliza, Poldrack, Russell A., Freimer, Nelson B. · 2010 · Neuron
  22. Bias towards large genes in autism
    Shohat, Shahar, Shifman, Sagiv · 2014 · Nature
  23. Effects of Functional Bias on Supervised Learning of a Gene Network Model
    Lee, Insuk, Marcotte, Edward M. · 2009 · Methods in Molecular Biology
  24. Quality control parameters on a large dataset of regionally dissected human control brains for whole genome expression studies
    Trabzuni, Daniah, Ryten, Mina, Walker, Robert, Smith, Colin, Imran, Sabaena, Ramasamy, Adaikalavan, Weale, Michael, Hardy, John · 2012 · Journal of Neurochemistry
  25. Technology Insight: querying the genome with microarrays—progress and hope for neurological disease
    Coppola, Giovanni, Geschwind, Daniel H · 2006 · Nature Clinical Practice Neurology