Timing the day: what makes bacterial clocks tick?

Resetting central and peripheral circadian oscillators in transgenic rats

Yamazaki, S., Numano, R., Abe, M., Hida, A., Takahashi, R.-I., Ueda, M., Block, G. D., Sakaki, Y., Menaker, M., & Tei, H. (2000) · Science · doi:10.1126/science.288.5466.682 · Cited by 1,907 · see citing works

Transkingdom Control of Microbiota Diurnal Oscillations Promotes Metabolic Homeostasis

Thaiss, C. A., Zeevi, D., Levy, M., Zilberman-Schapira, G., Suez, J., Tengeler, A. C., Abramson, L., Katz, M. N., Korem, T., Zmora, N., et al. (2014) · Cell · doi:10.1016/j.cell.2014.09.048 · Cited by 1,449 · see citing works

Feedback of the Drosophila period gene product on circadian cycling of its messenger RNA levels

Hardin, P. E., Hall, J. C., & Rosbash, M. (1990) · Nature · doi:10.1038/343536a0 · Cited by 1,156 · see citing works

Reconstitution of Circadian Oscillation of Cyanobacterial KaiC Phosphorylation in Vitro

Nakajima, M., Imai, K., Ito, H., Nishiwaki, T., Murayama, Y., Iwasaki, H., Oyama, T., & Kondo, T. (2005) · Science · doi:10.1126/science.1108451 · Cited by 1,110 · see citing works

Temporal Organization: Reflections of a Darwinian Clock-Watcher

Pittendrigh, C. S. (1993) · Annual Review of Physiology · doi:10.1146/annurev.ph.55.030193.000313 · Cited by 1,023 · see citing works

Diet and feeding pattern affect the diurnal dynamics of the gut microbiome

Zarrinpar, A., Chaix, A., Yooseph, S., & Panda, S. (2014) · Cell Metabolism · doi:10.1016/j.cmet.2014.11.008 · Cited by 926 · see citing works

Peroxiredoxins are conserved markers of circadian rhythms

Edgar, R. S., Green, E. W., Zhao, Y., Gerben Van Ooijen, A., Olmedo, M., Qin, X., Xu, Y. Q., Pan, M., Valekunja, U. K., Feeney, K. A., et al. (2012) · Nature · doi:10.1038/nature11088 · Cited by 915 · see citing works

Effects of Diurnal Variation of Gut Microbes and High-Fat Feeding on Host Circadian Clock Function and Metabolism

Leone, V., Gibbons, S. M., Martinez, K., Hutchison, A. L., Huang, E. Y., Cham, C. M., Pierre, J. F., Heneghan, A. F., Nadimpalli, A., Hubert, N., et al. (2015) · Cell Host & Microbe · doi:10.1016/j.chom.2015.03.006 · Cited by 908 · see citing works

Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations

Thaiss, C. A., Levy, M., Korem, T., Dohnalová, L., Shapiro, H., Jaitin, D. A., David, E., Winter, D. R., Gury-BenAri, M., Tatirovsky, E., et al. (2016) · Cell · doi:10.1016/j.cell.2016.11.003 · Cited by 870 · see citing works

Resonating circadian clocks enhance fitness in cyanobacteria

Ouyang, Y., Andersson, C. R., Kondo, T., Golden, S. S., & Johnson, C. H. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.15.8660 · Cited by 772 · see citing works

Small molecules from the human microbiota

Donia, M. S., & Fischbach, M. A. (2015) · Science · doi:10.1126/science.1254766 · Cited by 760 · see citing works

Expression of a Gene Cluster kaiABC as a Circadian Feedback Process in Cyanobacteria

Ishiura, M., Kutsuna, S., Aoki, S., Iwasaki, H., Andersson, C. R., Tanabe, A., Golden, S. S., Johnson, C. H., & Kondo, T. (1998) · Science · doi:10.1126/science.281.5382.1519 · Cited by 760 · see citing works

Chronobiology: biological timekeeping

(2004) · Choice Reviews Online · doi:10.5860/choice.41-2795 · Cited by 679 · see citing works

Negative Feedback Defining a Circadian Clock: Autoregulation of the Clock Gene frequency

Aronson, B. D., Johnson, K. A., Loros, J., & Dunlap, J. (1994) · Science · doi:10.1126/science.8128244 · Cited by 605 · see citing works

Rhythmicity of the intestinal microbiota is regulated by gender and the host circadian clock

Liang, X., Bushman, F. D., & FitzGerald, G. A. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1501305112 · Cited by 578 · see citing works

No transcription-translation feedback in circadian rhythm of KaiC phosphorylation

Tomita, J., Nakajima, M., Kondo, T., & Iwasaki, H. (2005) · Science · doi:10.1126/science.1102540 · Cited by 497 · see citing works

Circadian rhythms in prokaryotes: luciferase as a reporter of circadian gene expression in cyanobacteria.

Kondo, T., Strayer, C. A., Kulkarni, R. D., Taylor, W., Ishiura, M., Golden, S. S., & Johnson, C. H. (1993) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.90.12.5672 · Cited by 495 · see citing works

A bacterial cytokine

Mukamolova, G. V., Kaprelyants, A. S., Young, D. I., Young, M. R., & Kell, D. B. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.15.8916 · Cited by 452 · see citing works

Circadian disorganization alters intestinal microbiota

Voigt, R. M., Forsyth, C. B., Green, S. J., Mutlu, E., Engen, P., Vitaterna, M. H., Turek, F. W., & Keshavarzian, A. (2014) · PLoS ONE · doi:10.1371/journal.pone.0097500 · Cited by 439 · see citing works

Strategy by which nitrogen-fixing unicellular cyanobacteria grow photoautotrophically

Mitsui, A., Kumazawa, S., Takahashi, A., Ikemoto, H., Cao, S., & Arai, T. (1986) · Nature · doi:10.1038/323720a0 · Cited by 416 · see citing works

Ordered Phosphorylation Governs Oscillation of a Three-Protein Circadian Clock

Rust, M. J., Markson, J. S., Lane, W. S., Fisher, D. S., & O’Shea, E. K. (2007) · Science · doi:10.1126/science.1148596 · Cited by 415 · see citing works

Marked seasonal variation in the wild mouse gut microbiota

Maurice, C. F., Knowles, S. C. L., Ladau, J., Pollard, K. S., Fenton, A., Pedersen, A. B., & Turnbaugh, P. J. (2015) · The ISME Journal · doi:10.1038/ismej.2015.53 · Cited by 406 · see citing works

A Novel Circadian Phenotype Based on Firefly Luciferase Expression in Transgenic Plants

Millar, A. J., Short, S. R., Chua, N., & Kay, S. A. (1992) · The Plant Cell · doi:10.1105/tpc.4.9.1075 · Cited by 391 · see citing works

The Adaptive Value of Circadian Clocks

Woelfle, M. A., Ouyang, Y., Phanvijhitsiri, K., & Johnson, C. H. (2004) · Current Biology · doi:10.1016/j.cub.2004.08.023 · Cited by 375 · see citing works

Circadian orchestration of gene expression in cyanobacteria.Preprint

Liu, Y., Tsinoremas, N. F., Johnson, C. H., Lebedeva, N. V., Golden, S. S., Ishiura, M., & Kondo, T. (1995) · Genes & Development · doi:10.1101/gad.9.12.1469 · Cited by 373 · see citing works

Circadian gating of cell division in cyanobacteria growing with average doubling times of less than 24 hours.

Mori, T., Binder, B. J., & Johnson, C. H. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.19.10183 · Cited by 332 · see citing works

KaiA-stimulated KaiC phosphorylation in circadian timing loops in cyanobacteria

Iwasaki, H., Nishiwaki, T., Kitayama, Y., Nakajima, M., & Kondo, T. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.222467299 · Cited by 317 · see citing works

Circadian Rhythms in Cyanobacteria

Cohen, S., & Golden, S. S. (2015) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00036-15 · Cited by 290 · see citing works

ATPase activity of KaiC determines the basic timing for circadian clock of cyanobacteria

Terauchi, K., Kitayama, Y., Nishiwaki, T., Ito-Miwa, K., Murayama, Y., Oyama, T., & Kondo, T. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0706292104 · Cited by 279 · see citing works

A KaiC-Interacting Sensory Histidine Kinase, SasA, Necessary to Sustain Robust Circadian Oscillation in Cyanobacteria

Iwasaki, H., Williams, S. B., Kitayama, Y., Ishiura, M., Golden, S. S., & Kondo, T. (2000) · Cell · doi:10.1016/s0092-8674(00)80832-6 · Cited by 274 · see citing works

Chronobiology: biological timekeeping

Karatsoreos, I. N., & Silver, R. (2004) · Physiology & Behavior · doi:10.1016/s0031-9384(04)00288-4 · Cited by 272 · see citing works

Origin and evolution of circadian clock genes in prokaryotes

Dvornyk, V., Vinogradova, O. N., & Nevo, E. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0130099100 · Cited by 271 · see citing works

Human Gut Bacteria Are Sensitive to Melatonin and Express Endogenous Circadian Rhythmicity

Paulose, J. K., Wright, J. M., Patel, A., & Cassone, V. M. (2016) · PLoS ONE · doi:10.1371/journal.pone.0146643 · Cited by 264 · see citing works

A sequential program of dual phosphorylation of KaiC as a basis for circadian rhythm in cyanobacteria

Nishiwaki, T., Satomi, Y., Kitayama, Y., Terauchi, K., Kiyohara, R., Takao, T., & Kondo, T. (2007) · The EMBO Journal · doi:10.1038/sj.emboj.7601832 · Cited by 249 · see citing works

Resilient circadian oscillator revealed in individual cyanobacteria

Mihalcescu, I., Hsing, W., & Leibler, S. (2004) · Nature · doi:10.1038/nature02533 · Cited by 248 · see citing works

Light-Driven Changes in Energy Metabolism Directly Entrain the Cyanobacterial Circadian Oscillator

Rust, M. J., Golden, S. S., & O’Shea, E. K. (2011) · Science · doi:10.1126/science.1197243 · Cited by 246 · see citing works

A KaiC-associating SasA–RpaA two-component regulatory system as a major circadian timing mediator in cyanobacteria

Takai, N., Nakajima, M., Oyama, T., Kito, R., Sugita, C., Sugita, M., Kondo, T., & Iwasaki, H. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0602955103 · Cited by 241 · see citing works

Cyanobacterial Circadian Pacemaker: Kai Protein Complex Dynamics in the KaiC Phosphorylation Cycle In Vitro

Kageyama, H., Nishiwaki, T., Nakajima, M., Iwasaki, H., Oyama, T., & Kondo, T. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.05.039 · Cited by 220 · see citing works

A protein fold switch joins the circadian oscillator to clock output in cyanobacteria

Chang, Y.-G., Cohen, S. E., Phong, C., Myers, W. K., Kim, Y.-I., Tseng, R., Lin, J., Zhang, L., Boyd, J. S., Lee, Y., et al. (2015) · Science · doi:10.1126/science.1260031 · Cited by 212 · see citing works

Structure and function from the circadian clock protein KaiA of Synechococcus elongatus : A potential clock input mechanism

Williams, S. B., Vakonakis, I., Golden, S. S., & LiWang, A. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.232517099 · Cited by 211 · see citing works

Choreography of the Transcriptome, Photophysiology, and Cell Cycle of a Minimal Photoautotroph, Prochlorococcus

Zinser, E. R., Lindell, D., Johnson, Z. I., Futschik, M. E., Steglich, C., Coleman, M. L., Wright, M. A., Rector, T. L., Steen, R., McNulty, N. P., et al. (2009) · PLoS ONE · doi:10.1371/journal.pone.0005135 · Cited by 204 · see citing works

Visualizing a Circadian Clock Protein

Pattanayek, R., Wang, J., Mori, T., Xu, Y. Q., Johnson, C. H., & Egli, M. (2004) · Molecular Cell · doi:10.1016/j.molcel.2004.07.013 · Cited by 199 · see citing works

Oscillations in supercoiling drive circadian gene expression in cyanobacteria

Vijayan, V., Zuzow, R., & O’Shea, E. K. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0912673106 · Cited by 196 · see citing works

Dinitrogen-fixing endogenous rhythm inSynechococcusRF-1

Grobbelaar, N., Huang, T.-C., Lin, H., & Chow, T. J. (1986) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.1986.tb01788.x · Cited by 193 · see citing works

Divining the Essence of Symbiosis: Insights from the Squid-Vibrio Model

McFall‐Ngai, M. (2014) · PLoS Biology · doi:10.1371/journal.pbio.1001783 · Cited by 189 · see citing works

Cyanobacterial daily life with Kai-based circadian and diurnal genome-wide transcriptional control in Synechococcus elongatus

Ito, H., Mutsuda, M., Murayama, Y., Tomita, J., Hosokawa, N., Terauchi, K., Sugita, C., Sugita, M., Kondo, T., & Iwasaki, H. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0902587106 · Cited by 186 · see citing works

Circadian Control of Global Gene Expression by the Cyanobacterial Master Regulator RpaA

Markson, J. S., Piechura, J. R., Puszynska, A. M., & O’Shea, E. K. (2013) · Cell · doi:10.1016/j.cell.2013.11.005 · Cited by 183 · see citing works

Non-optimal codon usage is a mechanism to achieve circadian clock conditionality

Xu, Y. Q., Ma, P., Shah, P., Rokas, A., Liu, Y., & Johnson, C. H. (2013) · Nature · doi:10.1038/nature11942 · Cited by 174 · see citing works

Circadian rhythms in gene transcription imparted by chromosome compaction in the cyanobacterium Synechococcus elongatus

Smith, R. M., & Williams, S. B. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0508696103 · Cited by 165 · see citing works

Transcriptional patterns in both host and bacterium underlie a daily rhythm of anatomical and metabolic change in a beneficial symbiosis

Wier, A. M., Nyholm, S. V., Mandel, M. J., Massengo-Tiassé, R. P., Schaefer, A. L., Koroleva, I., BonDurant, S. S., Brown, B. J., Manzella, L., Snir, E., et al. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0909712107 · Cited by 164 · see citing works

Elevated ATPase Activity of KaiC Applies a Circadian Checkpoint on Cell Division in Synechococcus elongatus

Dong, G., Yang, Q., Wang, Q., Kim, Y.-I., Wood, T. L., Osteryoung, K. W., van Oudenaarden, A., & Golden, S. S. (2010) · Cell · doi:10.1016/j.cell.2009.12.042 · Cited by 155 · see citing works

Identification of key phosphorylation sites in the circadian clock protein KaiC by crystallographic and mutagenetic analyses

Xu, Y. Q., Mori, T., Pattanayek, R., Pattanayek, S., Egli, M., & Johnson, C. H. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0404768101 · Cited by 150 · see citing works

The day/night switch in KaiC, a central oscillator component of the circadian clock of cyanobacteria

Kim, Y.-I., Dong, G., Carruthers, C. W., Golden, S. S., & LiWang, A. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0800526105 · Cited by 150 · see citing works

Daily and Circadian Variation in Survival From Ultraviolet Radiation in Chlamydomonas reinhardtii

Nikaido, S. S., & Johnson, C. H. (2000) · Photochemistry and Photobiology · doi:10.1562/0031-8655(2000)0710758dacvis2.0.co2 · Cited by 144 · see citing works

Elucidating the Ticking of an In Vitro Circadian Clockwork

Mori, T., Williams, D., Byrne, M. O., Qin, X., Egli, M., Mchaourab, H. S., Stewart, P. L., & Johnson, C. H. (2007) · PLoS Biology · doi:10.1371/journal.pbio.0050093 · Cited by 143 · see citing works

Circadian clocks in prokaryotes

Johnson, C. H., Golden, S. S., Ishiura, M., & Kondo, T. (1996) · Molecular Microbiology · doi:10.1046/j.1365-2958.1996.00613.x · Cited by 142 · see citing works

The circadian oscillator in Synechococcus elongatus controls metabolite partitioning during diurnal growth

Diamond, S., Jun, D., Rubin, B. E., & Golden, S. S. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1504576112 · Cited by 139 · see citing works

Circadian gene expression is resilient to large fluctuations in overall transcription rates

Dibner, C., Sage, D., Unser, M. A., Bauer, C. R., d’Eysmond, T., Naef, F., & Schibler, U. (2008) · The EMBO Journal · doi:10.1038/emboj.2008.262 · Cited by 137 · see citing works

Dual KaiC-based oscillations constitute the circadian system of cyanobacteriaPreprint

Kitayama, Y., Nishiwaki, T., Terauchi, K., & Kondo, T. (2008) · Genes & Development · doi:10.1101/gad.1661808 · Cited by 133 · see citing works

Circadian clock‐protein expression in cyanobacteria: rhythms and phase setting

Xu, Y., Mori, T., & Johnson, C. H. (2000) · The EMBO Journal · doi:10.1093/emboj/19.13.3349 · Cited by 128 · see citing works

Atomic-scale origins of slowness in the cyanobacterial circadian clock

Abe, J., Hiyama, T. B., Mukaiyama, A., Son, S., Mori, T., Saito, S., Osako, M., Wolanin, J., Yamashita, E., Kondo, T., et al. (2015) · Science · doi:10.1126/science.1261040 · Cited by 127 · see citing works

Bioluminescence in the symbiotic squid Euprymna scolopes is controlled by a daily biological rhythm

Boettcher, K. J., Ruby, E. G., & McFall‐Ngai, M. (1996) · Journal of Comparative Physiology A · doi:10.1007/bf00193435 · Cited by 122 · see citing works

Autonomous synchronization of the circadian KaiC phosphorylation rhythm

Ito, H., Kageyama, H., Mutsuda, M., Nakajima, M., Oyama, T., & Kondo, T. (2007) · Nature Structural & Molecular Biology · doi:10.1038/nsmb1312 · Cited by 119 · see citing works

Genome Streamlining Results in Loss of Robustness of the Circadian Clock in the Marine Cyanobacterium Prochlorococcus marinus PCC 9511

Holtzendorff, J., Partensky, F., Mella–Flores, D., Lennon, J., Hess, W. R., & Garczarek, L. (2008) · Journal of Biological Rhythms · doi:10.1177/0748730408316040 · Cited by 117 · see citing works

Robust Circadian Oscillations in Growing Cyanobacteria Require Transcriptional Feedback

Teng, S., Mukherji, S., Moffitt, J. R., de Buyl, S., & O’Shea, E. K. (2013) · Science · doi:10.1126/science.1230996 · Cited by 116 · see citing works

Weather and Seasons Together Demand Complex Biological Clocks

Troein, C., Locke, J. C. W., Turner, M. S., & Millar, A. J. (2009) · Current Biology · doi:10.1016/j.cub.2009.09.024 · Cited by 115 · see citing works

Structure of the C-terminal domain of the clock protein KaiA in complex with a KaiC-derived peptide: Implications for KaiC regulation

Vakonakis, I., & LiWang, A. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0403037101 · Cited by 112 · see citing works

Oxidized quinones signal onset of darkness directly to the cyanobacterial circadian oscillator

Kim, Y.-I., Vinyard, D. J., Ananyev, G., Dismukes, G. C., & Golden, S. S. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1216401109 · Cited by 111 · see citing works

Circadian rhythms of superhelical status of DNA in cyanobacteria

Woelfle, M. A., Xu, Y. Q., Qin, X., & Johnson, C. H. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0706069104 · Cited by 105 · see citing works

A Cyanobacterial Circadian Clockwork

Johnson, C. H., Mori, T., & Xu, Y. Q. (2008) · Current Biology · doi:10.1016/j.cub.2008.07.012 · Cited by 102 · see citing works

Circadian clocks and cell division

Johnson, C. H. (2010) · Cell Cycle · doi:10.4161/cc.9.19.13205 · Cited by 98 · see citing works

Rhythms in Energy Storage Control the Ability of the Cyanobacterial Circadian Clock to Reset

Pattanayak, G. K., Phong, C., & Rust, M. J. (2014) · Current Biology · doi:10.1016/j.cub.2014.07.022 · Cited by 95 · see citing works

Visible light alters yeast metabolic rhythms by inhibiting respiration

Robertson, J. B., Davis, C. R., & Johnson, C. H. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1313369110 · Cited by 92 · see citing works

Circadian Autodephosphorylation of Cyanobacterial Clock Protein KaiC Occurs via Formation of ATP as Intermediate

Nishiwaki, T., & Kondo, T. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m112.350660 · Cited by 91 · see citing works

Intermolecular associations determine the dynamics of the circadian KaiABC oscillator

Qin, X., Byrne, M. O., Mori, T., Zou, P., Williams, D., Mchaourab, H. S., & Johnson, C. H. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1002119107 · Cited by 90 · see citing works

Coupling of a Core Post-Translational Pacemaker to a Slave Transcription/Translation Feedback Loop in a Circadian System

Qin, X., Byrne, M. O., Xu, Y. Q., Mori, T., & Johnson, C. H. (2010) · PLoS Biology · doi:10.1371/journal.pbio.1000394 · Cited by 89 · see citing works

Structural Insights into a Circadian Oscillator

Johnson, C. H., Egli, M., & Stewart, P. L. (2008) · Science · doi:10.1126/science.1150451 · Cited by 82 · see citing works

Robust circadian clocks from coupled protein-modification and transcription–translation cycles

Zwicker, D., Lubensky, D. K., & ten Wolde, P. R. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1007613107 · Cited by 82 · see citing works

Life before the Clock: Modeling Circadian Evolution

Roenneberg, T., & Merrow, M. W. (2002) · Journal of Biological Rhythms · doi:10.1177/0748730402238231 · Cited by 81 · see citing works

Biochemical Evidence for a Timing Mechanism in Prochlorococcus

Axmann, I. M. I., Dühring, U., Seeliger, L., Arnold, A., Vanselow, J. T., Kramer, A., & Wilde, A. (2009) · Journal of Bacteriology · doi:10.1128/jb.00419-09 · Cited by 78 · see citing works

Dephosphorylation of the Core Clock Protein KaiC in the Cyanobacterial KaiABC Circadian Oscillator Proceeds via an ATP Synthase Mechanism

Egli, M., Mori, T., Pattanayek, R., Xu, Y. Q., Qin, X., & Johnson, C. H. (2012) · Biochemistry · doi:10.1021/bi201525n · Cited by 76 · see citing works

Daily Rhythms in the Cyanobacterium Synechococcus elongatus Probed by High-resolution Mass Spectrometry–based Proteomics Reveals a Small Defined Set of Cyclic Proteins

Guerreiro, A. C. L., Benevento, M., Lehmann, R., van Breukelen, B., Post, H., Giansanti, P., Altelaar, M. A. F., Axmann, I. M. I., & Heck, A. J. R. (2014) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m113.035840 · Cited by 76 · see citing works

Conditionality of circadian rhythmicity: Synergistic action of light and temperature

Njus, D., McMurry, L. M., & Hastings, J. W. (1977) · Journal of Comparative Physiology B · doi:10.1007/bf00691559 · Cited by 73 · see citing works

Three major output pathways from the KaiABC-based oscillator cooperate to generate robust circadian kaiBC expression in cyanobacteria

Taniguchi, Y., Takai, N., Katayama, M., Kondo, T., & Oyama, T. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0909924107 · Cited by 68 · see citing works

Evolution of KaiC-Dependent Timekeepers: A Proto-circadian Timing Mechanism Confers Adaptive Fitness in the Purple Bacterium Rhodopseudomonas palustris

Ma, P., Mori, T., Zhao, C., Thiel, T., & Johnson, C. H. (2016) · PLoS Genetics · doi:10.1371/journal.pgen.1005922 · Cited by 68 · see citing works

Mixtures of opposing phosphorylations within hexamers precisely time feedback in the cyanobacterial circadian clock

LIN, J. L.-C., Chew, J., Chockanathan, U., & Rust, M. J. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1408692111 · Cited by 60 · see citing works

Cross-talk and regulatory interactions between the essential response regulator RpaB and cyanobacterial circadian clock output

Espinosa, J., Boyd, J. S., Cantos, R., Salinas, P., Golden, S. S., & Contreras, A. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1424632112 · Cited by 60 · see citing works

Rhythmic gene expression in a purple photosynthetic bacterium, Rhodobacter sphaeroides

Min, H., Guo, H., & Xiong, J. (2005) · FEBS Letters · doi:10.1016/j.febslet.2005.01.003 · Cited by 58 · see citing works

Diurnally Entrained Anticipatory Behavior in Archaea

Whitehead, K., Pan, M., Masumura, K., Bonneau, R., & Baliga, N. S. (2009) · PLoS ONE · doi:10.1371/journal.pone.0005485 · Cited by 58 · see citing works

Metabolic Compensation and Circadian Resilience in Prokaryotic Cyanobacteria

Johnson, C. H., & Egli, M. (2014) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-060713-035632 · Cited by 58 · see citing works

Structures of KaiC Circadian Clock Mutant Proteins: A New Phosphorylation Site at T426 and Mechanisms of Kinase, ATPase and Phosphatase

Pattanayek, R., Mori, T., Xu, Y. Q., Pattanayek, S., Johnson, C. H., & Egli, M. (2009) · PLoS ONE · doi:10.1371/journal.pone.0007529 · Cited by 53 · see citing works

Exchange of ADP with ATP in the CII ATPase domain promotes autophosphorylation of cyanobacterial clock protein KaiC

Nishiwaki‐Ohkawa, T., Kitayama, Y., Ochiai, E., & Kondo, T. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1319353111 · Cited by 46 · see citing works

Circadian Clock Proteins in Prokaryotes: Hidden Rhythms?

Loza‐Correa, M., Gómez-Valero, L., & Buchrieser, C. (2010) · Frontiers in Microbiology · doi:10.3389/fmicb.2010.00130 · Cited by 46 · see citing works

KaiC intersubunit communication facilitates robustness of circadian rhythms in cyanobacteria

Kitayama, Y., Nishiwaki‐Ohkawa, T., Sugisawa, Y., & Kondo, T. (2013) · Nature Communications · doi:10.1038/ncomms3897 · Cited by 43 · see citing works

Protein–Protein Interactions in the Cyanobacterial Circadian Clock: Structure of KaiA Dimer in Complex with C-Terminal KaiC Peptides at 2.8 Å Resolution

Pattanayek, R., & Egli, M. (2015) · Biochemistry · doi:10.1021/acs.biochem.5b00694 · Cited by 42 · see citing works

Combined SAXS/EM Based Models of the S. elongatus Post-Translational Circadian Oscillator and its Interactions with the Output His-Kinase SasA

Pattanayek, R., Williams, D., Rossi, G., Weigand, S. L., Mori, T., Johnson, C. H., Stewart, P. L., & Egli, M. (2011) · PLoS ONE · doi:10.1371/journal.pone.0023697 · Cited by 39 · see citing works

Intramolecular Regulation of Phosphorylation Status of the Circadian Clock Protein KaiC

Xu, Y. Q., Mori, T., Qin, X., Yan, H., Egli, M., & Johnson, C. H. (2009) · PLoS ONE · doi:10.1371/journal.pone.0007509 · Cited by 36 · see citing works

Regulation of the Cyanobacterial Circadian Clock by Electrochemically Controlled Extracellular Electron Transfer

Lu, Y., Nishio, K., Matsuda, S., Toshima, Y., Ito, H., Konno, T., Ishihara, K., Kato, S., Hashimoto, K., & Nakanishi, S. (2014) · Angewandte Chemie International Edition · doi:10.1002/anie.201309560 · Cited by 31 · see citing works

A circadian clock nanomachine that runs without transcription or translation

Egli, M., & Johnson, C. H. (2013) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2013.02.012 · Cited by 28 · see citing works

The Rolex and the Hourglass: a Simplified Circadian Clock in Prochlorococcus ?

Mullineaux, C. W., & Stanewsky, R. (2009) · Journal of Bacteriology · doi:10.1128/jb.00719-09 · Cited by 26 · see citing works

Attenuation of the posttranslational oscillator via transcription–translation feedback enhances circadian-phase shifts in Synechococcus

Hosokawa, N., Kushige, H., & Iwasaki, H. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1302243110 · Cited by 23 · see citing works

Importance of the monomer–dimer–tetramer interconversion of the clock protein KaiB in the generation of circadian oscillations in cyanobacteria

Iida, T., Mutoh, R., Onai, K., Morishita, M., Furukawa, Y., Namba, K., & Ishiura, M. (2014) · Genes to Cells · doi:10.1111/gtc.12211 · Cited by 19 · see citing works

Host and Environmental Factors Affecting the Intestinal Microbiota in Chickens

Kers, J. G., Velkers, F. C., Fischer, E. A. J., Hermes, G. D. A., Stegeman, A., & Smidt, H. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.00235 · Cited by 522 · see citing works

Gut reactions: Breaking down xenobiotic–microbiome interactions

Clarke, G., Sandhu, K. V., Griffin, B. T., Dinan, T. G., Cryan, J. F., & Hyland, N. P. (2019) · Pharmacological Reviews · doi:10.1124/pr.118.015768 · Cited by 319 · see citing works

Circadian Rhythms, Disease and Chronotherapy

Lee, Y., Field, J. M., & Sehgal, A. (2021) · Journal of Biological Rhythms · doi:10.1177/07487304211044301 · Cited by 166 · see citing works

Timing the Microbes: The Circadian Rhythm of the Gut Microbiome

Liang, X., & FitzGerald, G. A. (2017) · Journal of Biological Rhythms · doi:10.1177/0748730417729066 · Cited by 132 · see citing works

The evolutionary ecology of circadian rhythms in infection

Westwood, M. L., O’Donnell, A. J., de Bekker, C., Lively, C. M., Zuk, M., & Reece, S. E. (2019) · Nature Ecology & Evolution · doi:10.1038/s41559-019-0831-4 · Cited by 109 · see citing works

Structure, function, and mechanism of the core circadian clock in cyanobacteria

Swan, J. A., Golden, S. S., LiWang, A., & Partch, C. L. (2018) · Journal of Biological Chemistry · doi:10.1074/jbc.tm117.001433 · Cited by 100 · see citing works

Microbiome diurnal rhythmicity and its impact on host physiology and disease risk

Nobs, S. P., Tuganbaev, T., & Elinav, E. (2019) · EMBO Reports · doi:10.15252/embr.201847129 · Cited by 90 · see citing works

The connection of circadian rhythm to inflammatory bowel disease

Gombert, M., Carrasco‐Luna, J., Arboledas, G. P., & Codoñer‐Franch, P. (2018) · Translational research · doi:10.1016/j.trsl.2018.12.001 · Cited by 89 · see citing works

Rhythmicity of intestinal IgA responses confers oscillatory commensal microbiota mutualism

Penny, H. A., Domingues, R. G., Krauss, M. Z., Melo-González, F., Lawson, M. A., Dickson, S. H., Parkinson, J. E., Hurry, M. E. D., Purse, C., Jegham, E., et al. (2022) · Science Immunology · doi:10.1126/sciimmunol.abk2541 · Cited by 71 · see citing works

Revealing circadian mechanisms of integration and resilience by visualizing clock proteins working in real time

Mori, T., Sugiyama, S., Byrne, M. O., Johnson, C. H., Uchihashi, T., & Ando, T. (2018) · Nature Communications · doi:10.1038/s41467-018-05438-4 · Cited by 63 · see citing works

Cyanobacterial viruses exhibit diurnal rhythms during infection

Liu, R., Liu, Y., Chen, Y., Zhan, Y., & Zeng, Q. (2019) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1819689116 · Cited by 62 · see citing works

Entrainment of the Circadian Clock of the Enteric Bacterium Klebsiella aerogenes by Temperature Cycles

Paulose, J. K., Cassone, C. V., Graniczkowska, K. B., & Cassone, V. M. (2019) · iScience · doi:10.1016/j.isci.2019.09.007 · Cited by 62 · see citing works

Physiology of Methylotrophs Living in the Phyllosphere

Yurimoto, H., Shiraishi, K., & Sakai, Y. (2021) · Microorganisms · doi:10.3390/microorganisms9040809 · Cited by 60 · see citing works

The Oscillating Gut Microbiome and Its Effects on Host Circadian Biology

Litichevskiy, L., & Thaiss, C. A. (2022) · Annual Review of Nutrition · doi:10.1146/annurev-nutr-062320-111321 · Cited by 56 · see citing works

Circadian regulation of metabolism across photosynthetic organisms

Dantas, L. L. D. B., Eldridge, B. M., Dorling, J., Dekeya, R., Lynch, D. A., & Dodd, A. N. (2023) · The Plant Journal · doi:10.1111/tpj.16405 · Cited by 54 · see citing works

High protein copy number is required to suppress stochasticity in the cyanobacterial circadian clock

Chew, J., Leypunskiy, E., LIN, J. L.-C., Murugan, A., & Rust, M. J. (2018) · Nature Communications · doi:10.1038/s41467-018-05109-4 · Cited by 50 · see citing works

Spectres of Clock Evolution: Past, Present, and Yet to Come

Jabbur, M. L., & Johnson, C. H. (2022) · Frontiers in Physiology · doi:10.3389/fphys.2021.815847 · Cited by 49 · see citing works

A comprehensive history of motility and Archaellation in Archaea

Jarrell, K. F., Albers, S., & Machado, J. N. D. S. (2021) · FEMS Microbes · doi:10.1093/femsmc/xtab002 · Cited by 47 · see citing works

Circadian rhythms in the plant host influence rhythmicity of rhizosphere microbiota

Newman, A., Picot, E., Davies, S. E. W., Hilton, S. L., Carré, I. A., & Bending, G. D. (2022) · BMC Biology · doi:10.1186/s12915-022-01430-z · Cited by 43 · see citing works

Damped circadian oscillation in the absence of KaiA in Synechococcus

Kawamoto, N., Ito, H., Tokuda, I. T., & Iwasaki, H. (2020) · Nature Communications · doi:10.1038/s41467-020-16087-x · Cited by 42 · see citing works

The Microbiome as a Circadian Coordinator of Metabolism

Alvarez, Y., Glotfelty, L., Blank, N., Dohnalová, L., & Thaiss, C. A. (2020) · Endocrinology · doi:10.1210/endocr/bqaa059 · Cited by 41 · see citing works

Microbial circadian clocks: host-microbe interplay in diel cycles

Wollmuth, E. M., & Angert, E. R. (2023) · BMC Microbiology · doi:10.1186/s12866-023-02839-4 · Cited by 38 · see citing works

Magnesium Regulates the Circadian Oscillator in Cyanobacteria

Jeong, Y. M., Dias, C. L., Diekman, C. O., Brochon, H., Kim, P., Kaur, M., Kim, Y.-I., Jang, H.-I., & Kim, Y.-I. (2019) · Journal of Biological Rhythms · doi:10.1177/0748730419851655 · Cited by 37 · see citing works

Time to learn: The role of the molecular circadian clock in learning and memory

Smies, C. W., Bodinayake, K. K., & Kwapis, J. L. (2022) · Neurobiology of Learning and Memory · doi:10.1016/j.nlm.2022.107651 · Cited by 35 · see citing works

Timeless in animal circadian clocks and beyond

Cai, Y. D., & Chiu, J. C. (2021) · FEBS Journal · doi:10.1111/febs.16253 · Cited by 36 · see citing works

Bacteria can anticipate the seasons: Photoperiodism in cyanobacteria

Jabbur, M. L., Bratton, B. P., & Johnson, C. H. (2024) · Science · doi:10.1126/science.ado8588 · Cited by 36 · see citing works

Daily rhythmicity in coastal microbial mats

Hörnlein, C., Confurius-Guns, V., Stal, L. J., & Bolhuis, H. (2018) · npj Biofilms and Microbiomes · doi:10.1038/s41522-018-0054-5 · Cited by 34 · see citing works

Microbes in the Era of Circadian Medicine

Costantini, C., Renga, G., Sellitto, F., Borghi, M., Stincardini, C., Pariano, M., Zelante, T., Chiarotti, F., Bartoli, A., Mosci, P., et al. (2020) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2020.00030 · Cited by 34 · see citing works

B12-based photoreceptors: from structure and function to applications in optogenetics and synthetic biology

Padmanabhan, S., Pérez‐Castaño, R., & Arnanz, M. E. (2019) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2019.01.020 · Cited by 33 · see citing works

Epigenetic control of circadian clocks by environmental signals

Liu, X., Duan, Z., Yu, M., & Liu, X. (2024) · Trends in Cell Biology · doi:10.1016/j.tcb.2024.02.005 · Cited by 30 · see citing works

Multi-Modal Regulation of Circadian Physiology by Interactive Features of Biological Clocks

Lee, Y., & Wisor, J. P. (2021) · Biology · doi:10.3390/biology11010021 · Cited by 30 · see citing works

Circadian rhythms in colonic function

Hibberd, T. J., Ramsay, S. D., Spencer-Merris, P., Dinning, P. G., Zagorodnyuk, V. P., & Spencer, N. J. (2023) · Frontiers in Physiology · doi:10.3389/fphys.2023.1239278 · Cited by 28 · see citing works

Methylation deficiency disrupts biological rhythms from bacteria to humans

Fustin, J., Ye, S., Rakers, C., Kaneko, K., Fukumoto, K., Yamano, M., Versteven, M., Grünewald, E., Cargill, S. J., Tamai, K. T., et al. (2020) · Communications Biology · doi:10.1038/s42003-020-0942-0 · Cited by 27 · see citing works

Alternative splicing of Clock transcript mediates the response of circadian clocks to temperature changes

Cai, Y. D., Liu, X., Chow, G. K., Hidalgo, S., Jackson, K. C., Vasquez, C. D., Gao, Z. Y., Lam, V. H., Tabuloc, C. A., Zheng, H., et al. (2024) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2410680121 · Cited by 25 · see citing works

Proposed Role for KaiC-Like ATPases as Major Signal Transduction Hubs in Archaea

Makarova, K. S., Galperin, M. Y., & Koonin, E. V. (2017) · mBio · doi:10.1128/mbio.01959-17 · Cited by 26 · see citing works

Circadian clock helps cyanobacteria manage energy in coastal and high latitude ocean

Hellweger, F. L., Jabbur, M. L., Johnson, C. H., van Sebille, E., & Sasaki, H. (2019) · The ISME Journal · doi:10.1038/s41396-019-0547-0 · Cited by 23 · see citing works

Circadian rhythms in infectious diseases and symbiosis

Rijo‐Ferreira, F., & Takahashi, J. S. (2021) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2021.09.004 · Cited by 23 · see citing works

A Logic NAND Gate for Controlling Gene Expression in a Circadian Rhythm in Cyanobacteria

Lee, M., & Woo, H. M. (2020) · ACS Synthetic Biology · doi:10.1021/acssynbio.0c00455 · Cited by 20 · see citing works

High chemical affinity increases the robustness of biochemical oscillations

del Junco, C., & Vaikuntanathan, S. (2020) · Physical review. E · doi:10.1103/physreve.101.012410 · Cited by 20 · see citing works

Circadian regulation of kidney function: finding a role for Bmal1

Zhang, D., & Pollock, D. M. (2018) · American Journal of Physiology-Renal Physiology · doi:10.1152/ajprenal.00580.2017 · Cited by 18 · see citing works

KaiC family proteins integratively control temperature‐dependent UV resistance in Methylobacterium extorquens AM1

Iguchi, H., Yoshida, Y., Fujisawa, K., Taga, H., Yurimoto, H., Oyama, T., & Sakai, Y. (2018) · Environmental Microbiology Reports · doi:10.1111/1758-2229.12662 · Cited by 18 · see citing works

Circadian Rhythm Effects on the Molecular Regulation of Physiological Systems

Crislip, G. R., Johnston, J. G., Douma, L. G., Costello, H. M., Juffre, A., Boyd, K., Li, W. W., Maugans, C. C., Gutierrez‐Monreal, M. A., Esser, K. A., et al. (2021) · Comprehensive physiology · doi:10.1002/cphy.c210011 · Cited by 33 · see citing works

Origins and functions of microbiome rhythms

Kießling, S., Liu, S., Haller, D., & Thaiss, C. A. (2025) · Cell Host & Microbe · doi:10.1016/j.chom.2025.05.017 · Cited by 17 · see citing works

Towards Elucidating the Rotary Mechanism of the Archaellum Machinery

Machado, J. N. D. S., Albers, S., & Daum, B. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.848597 · Cited by 17 · see citing works

Vitamin B12 photoreceptors

Padmanabhan, S., Pérez‐Castaño, R., Osete-Alcaraz, L., Polanco, M. C., & Arnanz, M. E. (2022) · Vitamins and hormones · doi:10.1016/bs.vh.2022.01.007 · Cited by 17 · see citing works

Pressure accelerates the circadian clock of cyanobacteria

Kitahara, R., Oyama, K., Kawamura, T., Mitsuhashi, K., Kitazawa, S., Yasunaga, K., Sagara, N., Fujimoto, M., & Terauchi, K. (2019) · Scientific Reports · doi:10.1038/s41598-019-48693-1 · Cited by 16 · see citing works

ATP Is a Major Determinant of Phototrophic Bacterial Longevity in Growth Arrest

Yin, L., Ma, H., Fones, E. M., Morris, D. R., & Harwood, C. S. (2023) · mBio · doi:10.1128/mbio.03609-22 · Cited by 15 · see citing works

Circadian Clock's Cancer Connections

Walton, Z. E., Altman, B. J., Brooks, R. C., & Dang, C. V. (2017) · Annual Review of Cancer Biology · doi:10.1146/annurev-cancerbio-030617-050216 · Cited by 15 · see citing works

Diel light cycles affect phytoplankton competition in the global ocean

Tsakalakis, I., Follows, M. J., Dutkiewicz, S., Follett, C. L., & Vallino, J. J. (2022) · Global Ecology and Biogeography · doi:10.1111/geb.13562 · Cited by 14 · see citing works

Interaction between C1-microorganisms and plants: contribution to the global carbon cycle and microbial survival strategies in the phyllosphere

Yurimoto, H., & Sakai, Y. (2022) · Bioscience Biotechnology and Biochemistry · doi:10.1093/bbb/zbac176 · Cited by 14 · see citing works

Endogenous clock-mediated regulation of intracellular oxygen dynamics is essential for diazotrophic growth of unicellular cyanobacteria

Bandyopadhyay, A., Sengupta, A., Elvitigala, T. R., & Pakrasi, H. B. (2024) · Nature Communications · doi:10.1038/s41467-024-48039-0 · Cited by 14 · see citing works

Dawn to Dusk: Diurnal Rhythm of the Immune Response in Rainbow Trout (Oncorhynchus Mykiss)

Montero, R., Strzelczyk, J. E., Chan, J. T. H., Verleih, M., Rebl, A., Goldammer, T., Köllner, B., & Korytář, T. (2019) · Biology · doi:10.3390/biology9010008 · Cited by 14 · see citing works

Memory shapes microbial populations

Gokhale, C. S., Giaimo, S., & Remigi, P. (2021) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1009431 · Cited by 14 · see citing works

The nutrient-sensing GCN2 signaling pathway is essential for circadian clock function by regulating histone acetylation under amino acid starvation

Liu, X.-L., Yang, Y.-L., Hu, Y., Wu, J., Han, C.-Q., Lu, Q., Gan, X., Qi, S., Guo, J.-H., He, Q., et al. (2023) · eLife · doi:10.7554/elife.85241 · Cited by 10 · see citing works

Diurnal Regulation of In Vivo Localization and CO2-Fixing Activity of Carboxysomes in Synechococcus elongatus PCC 7942

Sun, Y., Huang, F., Dykes, G. F., & Liu, L. (2020) · Life · doi:10.3390/life10090169 · Cited by 14 · see citing works

Circadian Rhythm Effects on the Molecular Regulation of Physiological Systems

Crislip, G. R., Johnston, J. G., Douma, L. G., Costello, H. M., Juffre, A., Boyd, K., Li, W. W., Maugans, C. C., Gutierrez‐Monreal, M. A., Esser, K. A., et al. (2021) · Comprehensive physiology · doi:10.1002/j.2040-4603.2022.tb00198.x · Cited by 13 · see citing works

Synechocystis: A model system for expanding the study of cyanobacterial circadian rhythms

Zhao, C., Xu, Y. Q., Wang, B., & Johnson, C. H. (2023) · Frontiers in Physiology · doi:10.3389/fphys.2022.1085959 · Cited by 13 · see citing works

Chrononutrition Applied to Diabetes Management: A Paradigm Shift Long Delayed

Mezitis, N. H. E., & Bhatnagar, V. (2018) · Diabetes Spectrum · doi:10.2337/ds18-0014 · Cited by 13 · see citing works

Autophosphorylation of the KaiC‐like protein ArlH inhibits oligomerization and interaction with ArlI, the motor ATPase of the archaellum

Machado, J. N. D. S., Vollmar, L., Schimpf, J., Chaudhury, P., Kumariya, R., van der Does, C., Hugel, T., & Albers, S. (2021) · Molecular Microbiology · doi:10.1111/mmi.14781 · Cited by 13 · see citing works

The Rhythm of Many: Biological Rhythms in the Marine Environment, From Macro-Scale Planktonic Ecosystems to Micro-Scale Holobionts

Hewitt, O. H., & Shaikh, H. M. (2021) · Frontiers in Marine Science · doi:10.3389/fmars.2021.744169 · Cited by 13 · see citing works

Studying the Human Microbiota: Advances in Understanding the Fundamentals, Origin, and Evolution of Biological Timekeeping

Siebieszuk, A., Sejbuk, M., & Witkowska, A. M. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms242216169 · Cited by 12 · see citing works

Effects of sex, mating status, and genetic background on circadian behavior in Drosophila

Akpoghiran, O., Strich, A. K., & Koh, K. (2025) · Frontiers in Neuroscience · doi:10.3389/fnins.2024.1532868 · Cited by 12 · see citing works

Sleeping Beauty? Developmental Timing, Sleep, and the Circadian Clock in Caenorhabditis elegans

Olmedo, M., Merrow, M. W., & Geibel, M. (2017) · Advances in genetics · doi:10.1016/bs.adgen.2017.05.001 · Cited by 11 · see citing works

The endogenous circadian clock programs animals to eat at certain times of the 24-hour day: What if we ignore the clock?

Jiang, P., & Turek, F. W. (2018) · Physiology & Behavior · doi:10.1016/j.physbeh.2018.04.017 · Cited by 12 · see citing works

At the Intersection of Microbiota and Circadian Clock: Are Sexual Dimorphism and Growth Hormones the Missing Link to Pathology?

Weger, B. D., Rawashdeh, O., & Gachon, F. (2019) · BioEssays · doi:10.1002/bies.201900059 · Cited by 12 · see citing works

Checkpoint kinases regulate the circadian clock after DNA damage by influencing chromatin dynamics

Yang, Y.-L., Duan, Z., Liu, X., Li, Z., Shen, Z., Gong, S., Hu, Y., Hu, Y., Song, L., Wang, Z., et al. (2025) · Nucleic Acids Research · doi:10.1093/nar/gkaf162 · Cited by 11 · see citing works

Host circadian behaviors exert only weak selective pressure on the gut microbiome under stable conditions but are critical for recovery from antibiotic treatment

Zhao, C., Kelly, K., Jabbur, M. L., Paguaga, M. E., Behringer, M. G., & Johnson, C. H. (2022) · PLoS Biology · doi:10.1371/journal.pbio.3001865 · Cited by 11 · see citing works

Time-of-day-dependent responses of cyanobacterial cellular viability against oxidative stress

Tanaka, K., Shimakawa, G., & Nakanishi, S. (2020) · Scientific Reports · doi:10.1038/s41598-020-77141-8 · Cited by 11 · see citing works

The Gut Microbiome and Treatment-Resistance in Schizophrenia

Seeman, M. V. (2019) · Psychiatric Quarterly · doi:10.1007/s11126-019-09695-4 · Cited by 12 · see citing works

The endogenous redox rhythm is controlled by a central circadian oscillator in cyanobacterium Synechococcus elongatus PCC7942

Tanaka, K., Ishikawa, M., Kaneko, M., Kamiya, K., Kato, S., & Nakanishi, S. (2019) · Photosynthesis Research · doi:10.1007/s11120-019-00667-0 · Cited by 10 · see citing works

Circadian clock is critical for fungal pathogenesis by regulating zinc starvation response and secondary metabolism

Lu, Q., Yu, M., Sun, X., Zhou, X. M., Zhang, R., Zhang, Y., Liu, X.-L., Li, Z., Cai, L., Liu, H., et al. (2025) · Science Advances · doi:10.1126/sciadv.ads1341 · Cited by 9 · see citing works

Evolving perspectives on the molecular and neural foundations of mammalian circadian rhythms

Liu, Y., Huo, R., & Zhang, E. E. (2025) · Trends in Neurosciences · doi:10.1016/j.tins.2025.09.009 · Cited by 9 · see citing works

The Function, Regulation, and Mechanism of Protein Turnover in Circadian Systems in Neurospora and Other Species

Zhang, H., Zhou, Z., & Guo, J. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25052574 · Cited by 9 · see citing works

Circadian clock-controlled gene expression in co-cultured, mat-forming cyanobacteria

Hörnlein, C., Confurius-Guns, V., Grego, M., Stal, L. J., & Bolhuis, H. (2020) · Scientific Reports · doi:10.1038/s41598-020-69294-3 · Cited by 9 · see citing works

Is there crosstalk between circadian clocks in plants and the rhizomicrobiome?

Xu, X., & Dodd, A. N. (2022) · BMC Biology · doi:10.1186/s12915-022-01443-8 · Cited by 9 · see citing works

Seasonal cycles select for self-sustained circadian oscillators

Dani, C., Xu, Y., Jabbur, M. L., Kawamoto, N., Iwasaki, H., & Johnson, C. H. (2026) · Current Biology · doi:10.1016/j.cub.2026.01.012 · Cited by 8 · see citing works

Circadian rhythms and circadian clock gene homologs of complex alga Chromera velia

Richtová, J., Bazalová, O., Horák, A., Tomčala, A., Gonepogu, V. G., Obornı́k, M., & Doležel, D. (2023) · Frontiers in Plant Science · doi:10.3389/fpls.2023.1226027 · Cited by 8 · see citing works

The enigmatic clock of dinoflagellates, is it unique?

Jadhav, D. B., Sriramkumar, Y., & Roy, S. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.1004074 · Cited by 7 · see citing works

Circadian Proteomics Reassesses the Temporal Regulation of Metabolic Rhythms by Chlamydomonas Clock

Jadhav, D. B., & Roy, S. (2025) · Plant Cell & Environment · doi:10.1111/pce.15354 · Cited by 7 · see citing works

Reprogramming Metabolic Networks and Manipulating Circadian Clocks for Biotechnological Applications

Wang, B., Young, J. D., & Xu, Y. Q. (2021) · Springer eBooks · doi:10.1007/978-3-030-72158-9_14 · Cited by 7 · see citing works

Assaying Circadian Locomotor Activity Rhythm in Drosophila

Cai, Y. D., Hidalgo, S., Jackson, K. C., & Chiu, J. C. (2022) · Neuromethods · doi:10.1007/978-1-0716-2577-4_3 · Cited by 7 · see citing works

Theory for optimal estimation and control under resource limitations and its applications to biological information processing and decision-making

Tottori, T., & Kobayashi, T. J. (2025) · Physical Review Research · doi:10.1103/gvl6-cvby · Cited by 6 · see citing works

A Mechanistic Model of the Regulation of Division Timing by the Circadian Clock in Cyanobacteria

Ho, P.-Y., Martins, B. M. C., & Amir, A. (2020) · Biophysical Journal · doi:10.1016/j.bpj.2020.04.038 · Cited by 8 · see citing works

Phytoplankton Temporal Strategies Increase Entropy Production in a Marine Food Web Model

Vallino, J. J., & Tsakalakis, I. (2020) · Entropy · doi:10.3390/e22111249 · Cited by 5 · see citing works

Influence of Circadian Clocks on Optimal Regime of Central C-N Metabolism of Cyanobacteria

Červený, J., Šalagovič, J., Muzika, F., Šafránek, D., & Schreiber, I. (2018) · Elsevier eBooks · doi:10.1016/b978-0-12-814667-5.00009-x · Cited by 5 · see citing works

Reconstruction of the ancient cyanobacterial proto-circadian clock system KaiABC

Li, S., Zhou, Z., Yu, W. C., Jia, X., Wang, P., Wang, Y., Zuo, T., He, C., Fang, X., Dong, S., et al. (2025) · The EMBO Journal · doi:10.1038/s44318-025-00425-0 · Cited by 4 · see citing works

Exploring cyclic networks of multisite modification reveals origins of information processing characteristics

Suwanmajo, T., Ramesh, V., & Krishnan, J. (2020) · Scientific Reports · doi:10.1038/s41598-020-73045-9 · Cited by 4 · see citing works

Insights into the Evolution of Circadian Clocks Gleaned from Bacteria

Jabbur, M. L., Zhao, C., & Johnson, C. H. (2021) · Springer eBooks · doi:10.1007/978-3-030-72158-9_7 · Cited by 3 · see citing works

The Bacterial Perspective on Circadian Clocks

Johnson, C. H., & Rust, M. J. (2021) · Springer eBooks · doi:10.1007/978-3-030-72158-9_1 · Cited by 4 · see citing works

Could photoperiodic responses have evolved before the emergence of circadian clocks?

Jabbur, M. L., & Johnson, C. H. (2025) · New Phytologist · doi:10.1111/nph.70598 · Cited by 3 · see citing works

Impacts of Microgravity on Circadian Rhythms and Regulatory Mechanisms

Guo, J., Chen, S., Xu, X., Lu, X., Pan, J., Yang, Y., & Zhou, Z. (2025) · Space Science & Technology · doi:10.34133/space.0251 · Cited by 3 · see citing works

Gut Dysbiosis in Insomnia and Diurnal Cycle

Kumar, R. (2022) · Springer eBooks · doi:10.1007/978-981-16-6760-2_8 · Cited by 2 · see citing works

KaiC-like ATPases as Signal Transduction Hubs in Archaea

Makarova, K. S., & Koonin, E. V. (2017) · Springer eBooks · doi:10.1007/978-3-319-65536-9_11 · Cited by 2 · see citing works

Shift in Conformational Equilibrium Underlies the Oscillatory Phosphoryl Transfer Reaction in the Circadian Clock

Kim, P., Thati, N., Peshori, S., Jang, H.-I., & Kim, Y.-I. (2021) · Life · doi:10.3390/life11101058 · Cited by 2 · see citing works

Variation of the Human Milk Bacterial Diversity during the Time of the Day

Corona-Cervantes, K., Zavala-Torres, N. G., García-Gutiérrez, R., Piña-Escobedo, A., Hernández-Quiroz, F., & Garcı́a-Mena, J. (2021) · International Electronic Conference on Microbiology (ECM) · doi:10.3390/proceedings2020066033 · Cited by 2 · see citing works

An In Vitro Approach to Elucidating Clock-Modulating Metabolites

Kim, P., & Kim, Y.-I. (2021) · Springer eBooks · doi:10.1007/978-3-030-72158-9_11 · Cited by 2 · see citing works

Daily and Seasonal Rhythms of Marine Phages of Cyanobacteria

Hevroni, G., & Philosof, A. (2021) · Springer eBooks · doi:10.1007/978-3-030-72158-9_20 · Cited by 2 · see citing works

A model for the regulation of the timing of cell division by the circadian clock in the cyanobacterium Synechococcus elongatusPreprint

Ho, P.-Y., Martins, B. M. C., & Amir, A. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/765669 · Cited by 2 · see citing works

Rhizosphere microbiomes of field-grown B. stricta exhibit minimal diel changes in microbial membership and protein synthesis potential

Ceretto, A., & Weinig, C. (2025) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1609057 · Cited by 1 · see citing works

Biological timing: Changing photoperiods select for self-sustaining clocks

Cai, Y. D., & Chiu, J. C. (2026) · Current Biology · doi:10.1016/j.cub.2026.02.012 · Cited by 1 · see citing works

The elusive rhythms of bacterial life

Kay, H., & Jabbur, M. L. (2026) · FEBS Letters · doi:10.1002/1873-3468.70287

Timekeeping in bacteria: the cyanobacterial circadian clock

Golden, S. S. (2003) · Current Opinion in Microbiology · doi:10.1016/j.mib.2003.10.012 · Cited by 37 · see citing works

Towards the discovery of novel molecular clocks in Prokaryotes

Géron, A., Werner, J., Wattiez, R., & Matallana‐Surget, S. (2023) · Critical Reviews in Microbiology · doi:10.1080/1040841x.2023.2220789 · Cited by 15 · see citing works

Global orchestration of gene expression by the biological clock of cyanobacteria.

Johnson, C. H. (2004) · Genome biology · doi:10.1186/gb-2004-5-4-217 · Cited by 11 · see citing works

Are There Circadian Clocks in Non-Photosynthetic Bacteria?

Sartor, F., Eelderink-Chen, Z., Aronson, B., Bosman, J., Hibbert, L. E., Dodd, A. N., Kovács, Á. T., & Merrow, M. W. (2019) · Biology · doi:10.3390/biology8020041 · Cited by 46 · see citing works