Intraflagellar transport dynein is autoinhibited by trapping of its mechanical and track-binding elements
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Cilia are multifunctional organelles that are constructed using intraflagellar transport (IFT) of cargo to and from their tip. It is widely held that the retrograde IFT motor, dynein-2, must be controlled in order to reach the ciliary tip and then unleashed to power the return journey. However, the mechanism is unknown. Here, we systematically define the mechanochemistry of human dynein-2 motors as monomers, dimers, and multimotor assemblies with kinesin-II. Combining these data with insights from single-particle EM, we discover that dynein-2 dimers are intrinsically autoinhibited. Inhibition is mediated by trapping dynein-2's mechanical 'linker' and 'stalk' domains within a novel motor-motor interface. We find that linker-mediated inhibition enables efficient transport of dynein-2 by kinesin-II in vitro. These results suggest a conserved mechanism for autoregulation among dimeric dyneins, which is exploited as a switch for dynein-2's recycling activity during IFT.
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Progress has been made in understanding interactions between specific IFT particle polypeptides and specific ciliary cargo proteins or motor subunits during anterograde or retrograde IFT, as well as how IFT motor activity is regulated.
“Likewise, progress has been made towards understanding the interactions between specific IFT particle polypeptides and specific ciliary cargo proteins or motor subunits during anterograde or retrograde IFT, as well as how IFT motor activity is regulated 24, 48–52.”
From Cellular signalling by primary cilia in development, organ function and disease (2019) · cites this paper as [49]
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Fiji: an open-source platform for biological-image analysis
Schindelin, J., Arganda-Carreras, I., Frise, E., Kaynig, V., Longair, M., Pietzsch, T., Preibisch, S., Rueden, C., Saalfeld, S., Schmid, B., et al. (2012) · Nature Methods · doi:10.1038/nmeth.2019 · Cited by 66,890 · see citing works
UCSF Chimera—A visualization system for exploratory research and analysis
Pettersen, E. F., Goddard, T. D., Huang, C. C., Couch, G. S., Greenblatt, D. M., Meng, E. C., & Ferrin, T. E. (2004) · Journal of Computational Chemistry · doi:10.1002/jcc.20084 · Cited by 45,260 · see citing works
ggplot2: Elegant Graphics for Data Analysis
Wickham, H. (2009) · doi:10.1007/978-0-387-98141-3 · Cited by 14,447 · see citing works
RELION: Implementation of a Bayesian approach to cryo-EM structure determination
Scheres, S. H. W. (2012) · Journal of Structural Biology · doi:10.1016/j.jsb.2012.09.006 · Cited by 5,446 · see citing works
EMAN: Semiautomated Software for High-Resolution Single-Particle Reconstructions
Ludtke, S. J., Baldwin, P. R., & Chiu, W. (1999) · Journal of Structural Biology · doi:10.1006/jsbi.1999.4174 · Cited by 2,391 · see citing works
SPIDER and WEB: Processing and Visualization of Images in 3D Electron Microscopy and Related Fields
Frank, J., Radermacher, M., Penczek, P. A., Zhu, J., Li, Y., Ladjadj, M., & Leith, A. G. (1996) · Journal of Structural Biology · doi:10.1006/jsbi.1996.0030 · Cited by 2,026 · see citing works
Rosenbaum, J. L., & Witman, G. B. (2002) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm952 · Cited by 1,423 · see citing works
Accurate determination of local defocus and specimen tilt in electron microscopy
Mindell, J. A., & Grigorieff, N. (2003) · Journal of Structural Biology · doi:10.1016/s1047-8477(03)00069-8 · Cited by 1,414 · see citing works
When cilia go bad: cilia defects and ciliopathies
Fliegauf, M., Benzing, T., & Omran, H. (2007) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2278 · Cited by 1,257 · see citing works
A New Generation of the IMAGIC Image Processing System
van Heel, M., Harauz, G., Orlova, E. V., Schmidt, R., & Schatz, M. X. (1996) · Journal of Structural Biology · doi:10.1006/jsbi.1996.0004 · Cited by 1,229 · see citing works
A motility in the eukaryotic flagellum unrelated to flagellar beating.
Kozminski, K. G., Johnson, K. A., Forscher, P., & Rosenbaum, J. L. (1993) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.90.12.5519 · Cited by 1,007 · see citing works
Ciliogenesis: building the cell's antenna
Ishikawa, H., & Marshall, W. F. (2011) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3085 · Cited by 956 · see citing works
Cole, D. G., Diener, D. R., Himelblau, A. L., Beech, P. L., Fuster, J. C., & Rosenbaum, J. L. (1998) · The Journal of Cell Biology · doi:10.1083/jcb.141.4.993 · Cited by 898 · see citing works
[39] Preparation of modified tubulins
Hyman, A. A., Drechsel, D. N., Kellogg, D., Salser, S. J., Sawin, K. E., Steffen, P., Wordeman, L. G., & Mitchison, T. J. (1991) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/0076-6879(91)96041-o · Cited by 733 · see citing works
Castoldi, M., & Popov, A. V. (2003) · Protein Expression and Purification · doi:10.1016/s1046-5928(03)00218-3 · Cited by 710 · see citing works
Single-molecule analysis of dynein processivity and stepping behavior.
Reck-Peterson, S., Yildiz, A., Carter, A., Gennerich, A., Zhang, N., & Vale, R. (2006) · Cell · doi:10.1016/j.cell.2006.05.046 · Cited by 649 · see citing works
Activation of cytoplasmic dynein motility by dynactin-cargo adapter complexes
McKenney, R. J., Huynh, W., Tanenbaum, M. E., Bhabha, G., & Vale, R. D. (2014) · Science · doi:10.1126/science.1254198 · Cited by 571 · see citing works
Traffic control: regulation of kinesin motors
Verhey, K. J., & Hammond, J. W. (2009) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2782 · Cited by 546 · see citing works
Functions and mechanics of dynein motor proteins
Roberts, A. J., Kon, T., Knight, P. J., Sutoh, K., & Burgess, S. A. (2013) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3667 · Cited by 537 · see citing works
Self-citationDynein structure and power stroke
Burgess, S. A., Walker, M. L., Sakakibara, H., Knight, P. J., & Oiwa, K. (2003) · Nature · doi:10.1038/nature01377 · Cited by 508 · see citing works
The DHC1b (DHC2) Isoform of Cytoplasmic Dynein Is Required for Flagellar Assembly
Pazour, G. J., Dickert, B. L., & Witman, G. B. (1999) · The Journal of Cell Biology · doi:10.1083/jcb.144.3.473 · Cited by 471 · see citing works
Uyeda, T. Q. P., Kron, S. J., & Spudich, J. A. (1990) · Journal of Molecular Biology · doi:10.1016/0022-2836(90)90287-v · Cited by 448 · see citing works
Tug-of-War in Motor Protein Ensembles Revealed with a Programmable DNA Origami Scaffold
Derr, N. D., Goodman, B. S., Jungmann, R., Leschziner, A. E., Shih, W. M., & Reck‐Peterson, S. L. (2012) · Science · doi:10.1126/science.1226734 · Cited by 434 · see citing works
Bidirectional cargo transport: moving beyond tug of war
Hancock, W. O. (2014) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3853 · Cited by 433 · see citing works
Pazour, G. J., Wilkerson, C. G., & Witman, G. B. (1998) · The Journal of Cell Biology · doi:10.1083/jcb.141.4.979 · Cited by 425 · see citing works
The structure of the dynactin complex and its interaction with dynein
Urnavicius, L., Zhang, K., Diamant, A. G., Motz, C., Schlager, M. A., Yu, M., Patel, N. A., Robinson, C. V., & Carter, A. P. (2015) · Science · doi:10.1126/science.aaa4080 · Cited by 421 · see citing works
In vitro reconstitution of a highly processive recombinant human dynein complex
Schlager, M. A., Hoang, H. T., Urnavicius, L., Bullock, S. L., & Carter, A. P. (2014) · The EMBO Journal · doi:10.15252/embj.201488792 · Cited by 351 · see citing works
The Intraflagellar Transport Machinery
Taschner, M., & Lorentzen, E. (2016) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a028092 · Cited by 349 · see citing works
Cytoplasmic Dynein Heavy Chain 1b Is Required for Flagellar Assembly in<i>Chlamydomonas</i>
Porter, M. E., Bower, R., Knott, J. A., Byrd, P., & Dentler, W. (1999) · Molecular Biology of the Cell · doi:10.1091/mbc.10.3.693 · Cited by 333 · see citing works
Molecular Basis of Tubulin Transport Within the Cilium by IFT74 and IFT81
Bhogaraju, S., Cajanek, L., Fort, C., Blisnick, T., Weber, K., Taschner, M., Mizuno, N., Lamla, S., Bastin, P., Nigg, E. A., et al. (2013) · Science · doi:10.1126/science.1240985 · Cited by 317 · see citing works
IFT–Cargo Interactions and Protein Transport in Cilia
Lechtreck, K. F. (2015) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2015.09.003 · Cited by 316 · see citing works
Signor, D., Wedaman, K. P., Orozco, J. T., Dwyer, N. D., Bargmann, C. I., Rose, L. S., & Scholey, J. M. (1999) · The Journal of Cell Biology · doi:10.1083/jcb.147.3.519 · Cited by 301 · see citing works
Transport of a novel complex in the cytoplasmic matrix of <i>Chlamydomonas </i> flagella
Piperno, G., & Mead, K. (1997) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.94.9.4457 · Cited by 275 · see citing works
The 2.8 Å crystal structure of the dynein motor domain
Kon, T., Oyama, T., Shimo‐Kon, R., Imamula, K., Shima, T., Sutoh, K., & Kurisu, G. (2012) · Nature · doi:10.1038/nature10955 · Cited by 260 · see citing works
Polarity of flagellar assembly in Chlamydomonas.
Johnson, K. A., & Rosenbaum, J. L. (1992) · The Journal of Cell Biology · doi:10.1083/jcb.119.6.1605 · Cited by 255 · see citing works
Microtubule doublets are double-track railways for intraflagellar transport trains
S̆tĕpánek, L., & Pigino, G. (2016) · Science · doi:10.1126/science.aaf4594 · Cited by 252 · see citing works
Mechanism and Regulation of Cytoplasmic Dynein
Cianfrocco, M. A., DeSantis, M. E., Leschziner, A. E., & Reck‐Peterson, S. L. (2015) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-100814-125438 · Cited by 245 · see citing works
AAA+ Ring and Linker Swing Mechanism in the Dynein Motor
Roberts, A. J., Numata, N., Walker, M. L., Kato, Y., Malkova, B., Kon, T., Ohkura, R., Arisaka, F., Knight, P. J., Sutoh, K., et al. (2009) · Cell · doi:10.1016/j.cell.2008.11.049 · Cited by 222 · see citing works
Self-citationKon, T., Nishiura, M., Ohkura, R., Toyoshima, Y. Y., & Sutoh, K. (2004) · Biochemistry · doi:10.1021/bi048985a · Cited by 220 · see citing works
Engel, B. D., Ludington, W. B., & Marshall, W. F. (2009) · The Journal of Cell Biology · doi:10.1083/jcb.200812084 · Cited by 203 · see citing works
Dynein achieves processive motion using both stochastic and coordinated stepping
Qiu, W., Derr, N. D., Goodman, B. S., Villa, E., Wu, D., Shih, W. M., & Reck‐Peterson, S. L. (2012) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.2205 · Cited by 202 · see citing works
Intraflagellar transport delivers tubulin isotypes to sensory cilium middle and distal segments
Hao, L., Thein, M. C., Brust‐Mascher, I., Civelekoglu‐Scholey, G., Lu, Y., Açar, Ş., Prevo, B., Shaham, S., & Scholey, J. M. (2011) · Nature Cell Biology · doi:10.1038/ncb2268 · Cited by 188 · see citing works
Taschner, M. J., Weber, K., Mourão, A., Vetter, M., Awasthi, M., Stiegler, M., Bhogaraju, S., & Lorentzen, E. (2016) · The EMBO Journal · doi:10.15252/embj.201593164 · Cited by 186 · see citing works
The mammalian dynein–dynactin complex is a strong opponent to kinesin in a tug-of-war competition
Belyy, V., Schlager, M. A., Foster, H. E., Reimer, A. E., Carter, A. P., & Yıldız, A. (2016) · Nature Cell Biology · doi:10.1038/ncb3393 · Cited by 184 · see citing works
Structural organization of the dynein–dynactin complex bound to microtubules
Chowdhury, S., Ketcham, S. A., Schroer, T. A., & Lander, G. C. (2015) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.2996 · Cited by 181 · see citing works
Writing and Reading the Tubulin Code
Yu, I., Garnham, C. P., & Roll‐Mecak, A. (2015) · Journal of Biological Chemistry · doi:10.1074/jbc.r115.637447 · Cited by 180 · see citing works
Autoinhibition and cooperative activation mechanisms of cytoplasmic dynein
Torisawa, T., Ichikawa, M., Furuta, A., Saito, K., Oiwa, K., Kojima, H., Toyoshima, Y. Y., & Furuta, K. (2014) · Nature Cell Biology · doi:10.1038/ncb3048 · Cited by 177 · see citing works
Insights into dynein motor domain function from a 3.3-Å crystal structure
Schmidt, H., Gleave, E. S., & Carter, A. P. (2012) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.2272 · Cited by 175 · see citing works
Dissecting the Molecular Mechanisms of Intraflagellar Transport in Chlamydomonas
Pedersen, L. B., Geimer, S., & Rosenbaum, J. L. (2006) · Current Biology · doi:10.1016/j.cub.2006.02.020 · Cited by 174 · see citing works
Williams, C. L., McIntyre, J. C., Norris, S. R., Jenkins, P. M., Zhang, L., Pei, Q., Verhey, K. J., & Martens, J. R. (2014) · Nature Communications · doi:10.1038/ncomms6813 · Cited by 171 · see citing works
Gibbons, I. R., Garbarino, J. E., Tan, C. E., Reck‐Peterson, S. L., Vale, R. D., & Carter, A. P. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m501636200 · Cited by 171 · see citing works
Phylogeny and expression of axonemal and cytoplasmic dynein genes in sea urchins.
Gibbons, B. H., Asai, D. J., Tang, W., Hays, T. S., & Gibbons, I. R. (1994) · Molecular Biology of the Cell · doi:10.1091/mbc.5.1.57 · Cited by 169 · see citing works
Helix sliding in the stalk coiled coil of dynein couples ATPase and microtubule binding
Kon, T., Imamula, K., Roberts, A. J., Ohkura, R., Knight, P. J., Gibbons, I. R., Burgess, S. A., & Sutoh, K. (2009) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1555 · Cited by 169 · see citing works
Self-citationStructure of human cytoplasmic dynein-2 primed for its power stroke
Schmidt, H., Zalyte, R., Urnavicius, L., & Carter, A. P. (2014) · Nature · doi:10.1038/nature14023 · Cited by 165 · see citing works
Prevo, B., Mangeol, P., Oswald, F., Scholey, J. M., & Peterman, E. J. G. (2015) · Nature Cell Biology · doi:10.1038/ncb3263 · Cited by 163 · see citing works
ATP hydrolysis cycle–dependent tail motions in cytoplasmic dynein
Kon, T., Mogami, T., Ohkura, R., Nishiura, M., & Sutoh, K. (2005) · Nature Structural & Molecular Biology · doi:10.1038/nsmb930 · Cited by 160 · see citing works
Scholey, J. M. (2013) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-101512-122335 · Cited by 151 · see citing works
Regulatory ATPase Sites of Cytoplasmic Dynein Affect Processivity and Force Generation
Cho, C., Reck‐Peterson, S. L., & Vale, R. D. (2008) · Journal of Biological Chemistry · doi:10.1074/jbc.m802951200 · Cited by 138 · see citing works
How dynein and dynactin transport cargos: a structural perspective
Carter, A. P., Diamant, A. G., & Urnavicius, L. (2016) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2015.12.003 · Cited by 137 · see citing works
Reconstitution of the human cytoplasmic dynein complex
Trokter, M., Mücke, N., & Surrey, T. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1210573110 · Cited by 122 · see citing works
Autoinhibition regulates the motility of the C. elegans intraflagellar transport motor OSM-3
Imanishi, M., Endres, N., Gennerich, A., & Vale, R. D. (2006) · The Journal of Cell Biology · doi:10.1083/jcb.200605179 · Cited by 119 · see citing works
Liang, Y., Pang, Y., Wu, Q., Hu, Z., Han, X., Xu, Y., Deng, H., & Pan, J. (2014) · Developmental Cell · doi:10.1016/j.devcel.2014.07.019 · Cited by 116 · see citing works
Brain dynein crossbridges microtubules into bundles
Amos, L. (1989) · Journal of Cell Science · doi:10.1242/jcs.93.1.19 · Cited by 113 · see citing works
Intraflagellar transport drives flagellar surface motility
Shih, S. M., Engel, B. D., Kocabaş, F., Bilyard, T., Gennerich, A., Marshall, W. F., & Yıldız, A. (2013) · eLife · doi:10.7554/elife.00744 · Cited by 109 · see citing works
Together, the IFT81 and IFT74 N-termini form the main module for intraflagellar transport of tubulin
Kubo, T., Brown, J., Bellve, K. D., Craige, B., Weghe, J. C. V. D., Fogarty, K. E., Lechtreck, K. F., & Witman, G. B. (2016) · Journal of Cell Science · doi:10.1242/jcs.187120 · Cited by 103 · see citing works
Subunit composition of the human cytoplasmic dynein-2 complex
Asante, D., Stevenson, N. L., & Stephens, D. J. (2014) · Journal of Cell Science · doi:10.1242/jcs.159038 · Cited by 103 · see citing works
ATP-Driven Remodeling of the Linker Domain in the Dynein Motor
Roberts, A. J., Malkova, B., Walker, M. L., Sakakibara, H., Numata, N., Kon, T., Ohkura, R., Edwards, T. A., Knight, P. J., Sutoh, K., et al. (2012) · Structure · doi:10.1016/j.str.2012.07.003 · Cited by 94 · see citing works
Self-citationThe Mechanochemical Cycle of Mammalian Kinesin-2 KIF3A/B under Load
Andreasson, J. O. L., Shastry, S., Hancock, W. O., & Block, S. M. (2015) · Current Biology · doi:10.1016/j.cub.2015.03.013 · Cited by 86 · see citing works
Control of cytoplasmic dynein force production and processivity by its C-terminal domain
Nicholas, M. P., Höök, P., Brenner, S., Wynne, C. L., Vallee, R. B., & Gennerich, A. (2015) · Nature Communications · doi:10.1038/ncomms7206 · Cited by 82 · see citing works
Schmidts, M., Hou, Y., Cortés, C. R., Mans, D. A., Huber, C., Boldt, K., Patel, M., van Reeuwijk, J., Plaza, J.-M., van Beersum, S. E. C., et al. (2015) · Nature Communications · doi:10.1038/ncomms8074 · Cited by 73 · see citing works
Dynein and intraflagellar transport
Hou, Y., & Witman, G. B. (2015) · Experimental Cell Research · doi:10.1016/j.yexcr.2015.02.017 · Cited by 70 · see citing works
Imai, H., Shima, T., Sutoh, K., Walker, M., Knight, P. J., Kon, T., & Burgess, S. A. (2015) · Nature Communications · doi:10.1038/ncomms9179 · Cited by 65 · see citing works
Brunnbauer, M., Mueller‐Planitz, F., Kösem, S., Ho, T. H., Dombi, R., Gebhardt, J. C. M., Rief, M., & Ökten, Z. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1005177107 · Cited by 63 · see citing works
WD60/FAP163 is a dynein intermediate chain required for retrograde intraflagellar transport in cilia
Patel, R., Gilberti, R. M., Hom, E. F. Y., & King, S. M. (2013) · Molecular Biology of the Cell · doi:10.1091/mbc.e13-05-0266 · Cited by 57 · see citing works
Shima, T., Imamula, K., Kon, T., Ohkura, R., & Sutoh, K. (2006) · Journal of Structural Biology · doi:10.1016/j.jsb.2006.03.014 · Cited by 57 · see citing works
Li, W., Yi, P., & Ou, G. (2015) · The Journal of Cell Biology · doi:10.1083/jcb.201411041 · Cited by 54 · see citing works
Ichikawa, M., Watanabe, Y., Murayama, T., & Toyoshima, Y. Y. (2011) · FEBS Letters · doi:10.1016/j.febslet.2011.06.026 · Cited by 29 · see citing works
Isolation of intraflagellar transport trains
Mencarelli, C., Mitchell, A. P., Leoncini, R., Rosenbaum, J. L., & Lupetti, P. (2013) · Cytoskeleton · doi:10.1002/cm.21121 · Cited by 10 · see citing works
Engineering Defined Motor Ensembles with DNA Origami
Goodman, B. S., & Reck‐Peterson, S. L. (2014) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/b978-0-12-397924-7.00010-8 · Cited by 10 · see citing works
Heterodimerization of Kinesin-2 KIF3AB Modulates Entry into the Processive Run
Albracht, C. D., Guzik-Lendrum, S., Rayment, I., & Gilbert, S. P. (2016) · Journal of Biological Chemistry · doi:10.1074/jbc.m116.752196 · Cited by 9 · see citing works
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Cellular signalling by primary cilia in development, organ function and disease
Anvarian, Z., Mykytyn, K., Mukhopadhyay, S., Pedersen, L. B., & Christensen, S. T. (2019) · Nature Reviews Nephrology · doi:10.1038/s41581-019-0116-9 · Cited by 845 · see citing works
Cryo-EM Reveals How Human Cytoplasmic Dynein Is Auto-inhibited and Activated
Zhang, K., Foster, H. E., Rondelet, A., Lacey, S. E., Bahi‐Buisson, N., Bird, A. W., & Carter, A. P. (2017) · Cell · doi:10.1016/j.cell.2017.05.025 · Cited by 297 · see citing works
Jordan, M. A., Diener, D. R., Stepanek, L., & Pigino, G. (2018) · Nature Cell Biology · doi:10.1038/s41556-018-0213-1 · Cited by 186 · see citing works
Dynamics of the IFT machinery at the ciliary tip
Chien, A. J., Shih, S. M., Bower, R., Tritschler, D., Porter, M. E., & Yıldız, A. (2017) · eLife · doi:10.7554/elife.28606 · Cited by 153 · see citing works
Structure and Mechanics of Dynein Motors
Canty, J. T., Tan, R., Kusakci, E., Fernandes, J., & Yıldız, A. (2021) · Annual Review of Biophysics · doi:10.1146/annurev-biophys-111020-101511 · Cited by 129 · see citing works
Structure of the dynein-2 complex and its assembly with intraflagellar transport trains
Toropova, K., Zalyte, R., Mukhopadhyay, A. G., Mladenov, M., Carter, A. P., & Roberts, A. J. (2019) · Nature Structural & Molecular Biology · doi:10.1038/s41594-019-0286-y · Cited by 122 · see citing works
Self-citationAssembly, Functions and Evolution of Archaella, Flagella and Cilia
Khan, S., & Scholey, J. M. (2018) · Current Biology · doi:10.1016/j.cub.2018.01.085 · Cited by 96 · see citing works
Cargo adaptors regulate stepping and force generation of mammalian dynein–dynactin
Elshenawy, M. M., Canty, J. T., Oster, L. F., Ferro, L. S., Zhou, Z., Blanchard, S. C., & Yıldız, A. (2019) · Nature Chemical Biology · doi:10.1038/s41589-019-0352-0 · Cited by 96 · see citing works
Activation and Regulation of Cytoplasmic Dynein
Canty, J. T., & Yıldız, A. (2020) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2020.02.002 · Cited by 89 · see citing works
Architecture of the IFT ciliary trafficking machinery and interplay between its components
Nakayama, K., & Katoh, Y. (2020) · Critical Reviews in Biochemistry and Molecular Biology · doi:10.1080/10409238.2020.1768206 · Cited by 79 · see citing works
A small-molecule activator of kinesin-1 drives remodeling of the microtubule network
Randall, T. S., Yip, Y. Y., Wallock-Richards, D. J., Pfisterer, K., Sanger, A., Ficek, W., Steiner, R. A., Beavil, A. J., Parsons, M., & Dodding, M. P. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1715115115 · Cited by 80 · see citing works
Marzo, M. G., Griswold, J. M., & Markus, S. M. (2020) · Nature Cell Biology · doi:10.1038/s41556-020-0492-1 · Cited by 78 · see citing works
New insights into the mechanism of dynein motor regulation by lissencephaly-1
Markus, S. M., Marzo, M. G., & McKenney, R. J. (2020) · eLife · doi:10.7554/elife.59737 · Cited by 74 · see citing works
LIS1 regulates cargo-adapter–mediated activation of dynein by overcoming its autoinhibition in vivo
Qiu, R., Zhang, J., & Xiang, X. (2019) · The Journal of Cell Biology · doi:10.1083/jcb.201905178 · Cited by 72 · see citing works
Picariello, T., Brown, J., Hou, Y., Swank, G., Cochran, D. A., King, O. D., Lechtreck, K. F., Pazour, G. J., & Witman, G. B. (2019) · Journal of Cell Science · doi:10.1242/jcs.220749 · Cited by 70 · see citing works
Tan, R., Foster, P. J., Needleman, D. J., & McKenney, R. J. (2018) · Developmental Cell · doi:10.1016/j.devcel.2017.12.023 · Cited by 67 · see citing works
Intraflagellar transport trains and motors: Insights from structure
Webb, S., Mukhopadhyay, A. G., & Roberts, A. J. (2020) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2020.05.021 · Cited by 66 · see citing works
Self-citationMolecular mechanism of cytoplasmic dynein tension sensing
Rao, L., Berger, F., Nicholas, M. P., & Gennerich, A. (2019) · Nature Communications · doi:10.1038/s41467-019-11231-8 · Cited by 65 · see citing works
Emerging mechanisms of dynein transport in the cytoplasm versus the cilium
Roberts, A. J. (2018) · Biochemical Society Transactions · doi:10.1042/bst20170568 · Cited by 62 · see citing works
Self-citationDynein-2 intermediate chains play crucial but distinct roles in primary cilia formation and function
Vuolo, L., Stevenson, N. L., Heesom, K. J., & Stephens, D. J. (2018) · eLife · doi:10.7554/elife.39655 · Cited by 56 · see citing works
Molecular architecture of the autoinhibited kinesin-1 lambda particle
Weijman, J. F., Yadav, S. K. N., Surridge, K. J., Cross, J. A., Borucu, U., Mantell, J., Woolfson, D. N., Schaffitzel, C., & Dodding, M. P. (2022) · Science Advances · doi:10.1126/sciadv.abp9660 · Cited by 54 · see citing works
Regulation of ciliary membrane protein trafficking and signalling by kinesin motor proteins
Morthorst, S. K., Christensen, S. T., & Pedersen, L. B. (2018) · The FEBS Journal · doi:10.1111/febs.14583 · Cited by 49 · see citing works
Remodeling and activation mechanisms of outer arm dyneins revealed by cryo-EM
Kubo, S., Yang, S. K., Black, C. S., Dai, D., Valente-Paterno, M., Gaertig, J., Ichikawa, M., & Bui, K. H. (2021) · EMBO Reports · doi:10.15252/embr.202152911 · Cited by 44 · see citing works
The structural basis of intraflagellar transport at a glance
Jordan, M. A., & Pigino, G. (2021) · Journal of Cell Science · doi:10.1242/jcs.247163 · Cited by 48 · see citing works
DYNC2H1 hypomorphic or retina-predominant variants cause nonsyndromic retinal degeneration
Vig, A., Poulter, J. A., Ottaviani, D., Tavares, E. S., Toropova, K., Tracewska, A. M., Mollica, A., Kang, J., Kehelwathugoda, O., Paton, T., et al. (2020) · Genetics in Medicine · doi:10.1038/s41436-020-0915-1 · Cited by 47 · see citing works
Self-citationTsurumi, Y., Hamada, Y., Katoh, Y., & Nakayama, K. (2019) · Molecular Biology of the Cell · doi:10.1091/mbc.e18-10-0678 · Cited by 46 · see citing works
Cooperative amyloid fibre binding and disassembly by the Hsp70 disaggregase
Beton, J. G., Monistrol, J., Wentink, A. S., Johnston, E. C., Roberts, A., Bukau, B., Hoogenboom, B. W., & Saibil, H. R. (2022) · The EMBO Journal · doi:10.15252/embj.2021110410 · Cited by 39 · see citing works
Self-citationCytoplasmic dynein-2 at a glance
Vuolo, L., Stevenson, N. L., Mukhopadhyay, A. G., Roberts, A. J., & Stephens, D. J. (2020) · Journal of Cell Science · doi:10.1242/jcs.240614 · Cited by 36 · see citing works
Self-citationMotor Cooperation During Mitosis and Ciliogenesis
Ou, G., & Scholey, J. M. (2022) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-121420-100107 · Cited by 35 · see citing works
Length regulation of multiple flagella that self-assemble from a shared pool of components
Fai, T. G., Mohapatra, L., Kar, P., Kondev, J., & Amir, A. (2019) · eLife · doi:10.7554/elife.42599 · Cited by 35 · see citing works
WDR60-mediated dynein-2 loading into cilia powers retrograde IFT and transition zone crossing
De-Castro, A. R. G., Rodrigues, D. R. M., De-Castro, M. J. G., Vieira, N., Vieira, C., Carvalho, A. X., Gassmann, R., Abreu, C. M. C., & Dantas, T. J. (2021) · The Journal of Cell Biology · doi:10.1083/jcb.202010178 · Cited by 35 · see citing works
Peña, A., Sweeney, A., Cook, A. D., Locke, J., Topf, M., & Moores, C. A. (2020) · Structure · doi:10.1016/j.str.2020.01.013 · Cited by 35 · see citing works
KIF1A-Associated Neurological Disorder: An Overview of a Rare Mutational Disease
Nair, A., Greeny, A., Rajendran, R., Abdelgawad, M. A., Ghoneim, M. M., Raghavan, R. P., Sudevan, S. T., Mathew, B., & Kim, H. (2023) · Pharmaceuticals · doi:10.3390/ph16020147 · Cited by 30 · see citing works
Wingfield, J. L., Mekonnen, B., Mengoni, I., Liu, P., Jordan, M. A., Diener, D. R., Pigino, G., & Lechtreck, K. F. (2021) · Journal of Cell Science · doi:10.1242/jcs.259010 · Cited by 29 · see citing works
WDR92 is required for axonemal dynein heavy chain stability in cytoplasm
Patel, R., Sakato-Antoku, M., Yankova, M. P., & King, S. M. (2019) · Molecular Biology of the Cell · doi:10.1091/mbc.e19-03-0139 · Cited by 28 · see citing works
Mechanisms of Regulation in Intraflagellar Transport
Mul, W., Mitra, A., & Peterman, E. J. G. (2022) · Cells · doi:10.3390/cells11172737 · Cited by 27 · see citing works
Cook, A. D., Roberts, A. J., Atherton, J., Tewari, R., Topf, M., & Moores, C. A. (2021) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2021.101063 · Cited by 23 · see citing works
Self-citationForce-Generating Mechanism of Axonemal Dynein in Solo and Ensemble
Ishibashi, K., Sakakibara, H., & Oiwa, K. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21082843 · Cited by 22 · see citing works
The regulatory function of the AAA4 ATPase domain of cytoplasmic dynein
Liu, X., Rao, L., & Gennerich, A. (2020) · Nature Communications · doi:10.1038/s41467-020-19477-3 · Cited by 22 · see citing works
Turning dyneins off bends cilia
King, S. M. (2018) · Cytoskeleton · doi:10.1002/cm.21483 · Cited by 22 · see citing works
Hiyamizu, S., Qiu, H., Vuolo, L., Stevenson, N. L., Shak, C., Heesom, K. J., Hamada, Y., Tsurumi, Y., Chiba, S., Katoh, Y., et al. (2023) · Journal of Cell Science · doi:10.1242/jcs.260462 · Cited by 19 · see citing works
IFT cargo and motors associate sequentially with IFT trains to enter cilia of C. elegans
Mitra, A., Loseva, E., & Peterman, E. J. G. (2024) · Nature Communications · doi:10.1038/s41467-024-47807-2 · Cited by 22 · see citing works
Step Sizes and Rate Constants of Single-headed Cytoplasmic Dynein Measured with Optical Tweezers
Kinoshita, Y., Kambara, T., Nishikawa, K., Kaya, M., & Higuchi, H. (2018) · Scientific Reports · doi:10.1038/s41598-018-34549-7 · Cited by 20 · see citing works
Structural insights into the architecture and assembly of eukaryotic flagella
Petriman, N.-A., & Lorentzen, E. (2020) · Microbial Cell · doi:10.15698/mic2020.11.734 · Cited by 18 · see citing works
Axonemal dyneins: genetics, structure, and motor activity
King, S. M., Yagi, T., & Kamiya, R. (2023) · Elsevier eBooks · doi:10.1016/b978-0-12-822508-0.00002-2 · Cited by 17 · see citing works
The Generation of Dynein Networks by Multi-Layered Regulation and Their Implication in Cell Division
Torisawa, T., & Kimura, A. (2020) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2020.00022 · Cited by 16 · see citing works
Setting the dynein motor in motion: New insights from electron tomography
Grotjahn, D. A., & Lander, G. C. (2019) · Journal of Biological Chemistry · doi:10.1074/jbc.rev119.003095 · Cited by 15 · see citing works
Structure and tethering mechanism of dynein-2 intermediate chains in intraflagellar transport
Mukhopadhyay, A. G., Toropova, K., Daly, L., Wells, J. N., Vuolo, L., Mladenov, M., Seda, M., Jenkins, D., Stephens, D. J., & Roberts, A. J. (2024) · The EMBO Journal · doi:10.1038/s44318-024-00060-1 · Cited by 15 · see citing works
Self-citationRoles for CEP170 in cilia function and dynein-2 assembly
Weijman, J. F., Vuolo, L., Shak, C., Pugnetti, A., Mukhopadhyay, A. G., Hodgson, L. R., Heesom, K. J., Roberts, A. J., & Stephens, D. J. (2024) · Journal of Cell Science · doi:10.1242/jcs.261816 · Cited by 15 · see citing works
Self-citationQiu, H., Tsurumi, Y., Katoh, Y., & Nakayama, K. (2022) · Scientific Reports · doi:10.1038/s41598-021-03950-0 · Cited by 14 · see citing works
Structure and Function of Dynein’s Non-Catalytic Subunits
Rao, L., & Gennerich, A. (2024) · Cells · doi:10.3390/cells13040330 · Cited by 13 · see citing works
Activation of mammalian cytoplasmic dynein in multimotor motility assays
Monzon, G. A., Scharrel, L., Santen, L., & Diez, S. (2018) · Journal of Cell Science · doi:10.1242/jcs.220079 · Cited by 13 · see citing works
Marzo, M. G., Griswold, J. M., & Markus, S. M. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/684290 · Cited by 11 · see citing works
Hiyamizu, S., Qiu, H., Tsurumi, Y., Hamada, Y., Katoh, Y., & Nakayama, K. (2023) · Biology Open · doi:10.1242/bio.059976 · Cited by 9 · see citing works
A nucleotide code governs Lis1’s ability to relieve dynein autoinhibition
Geohring, I. C., Chai, P., Iyer, B. R., Ton, W. D., Yang, J. W., Ide, A. H., George, S. C., Bagri, J. S., Baird, S. V., Zhang, K., et al. (2026) · Nature Chemical Biology · doi:10.1038/s41589-025-02096-8 · Cited by 8 · see citing works
Shak, C., Vuolo, L., Uddin, B., Katoh, Y., Brown, T. P., Mukhopadhyay, A. G., Heesom, K. J., Roberts, A. J., Stevenson, N. L., Nakayama, K., et al. (2022) · Journal of Cell Science · doi:10.1242/jcs.260073 · Cited by 8 · see citing works
Self-citationRegulation of kinesin-2 motility by its β-hairpin motif
Webb, S., Toropova, K., Mukhopadhyay, A. G., Nofal, S. D., & Roberts, A. J. (2025) · Nature Structural & Molecular Biology · doi:10.1038/s41594-025-01630-5 · Cited by 7 · see citing works
Self-citationMechanochemical tuning of a kinesin motor essential for malaria parasite transmission
Liu, T., Shilliday, F., Cook, A. D., Zeeshan, M., Brady, D., Tewari, R., Sutherland, C. J., Roberts, A. J., & Moores, C. A. (2022) · Nature Communications · doi:10.1038/s41467-022-34710-x · Cited by 6 · see citing works
Self-citationRah, G., Cha, H., Kim, J., Song, J., Kim, H., Oh, Y. K., Ahn, C., Kang, M., Kim, J. M., Yoo, K. H., et al. (2022) · Journal of the American Society of Nephrology · doi:10.1681/asn.2021111455 · Cited by 6 · see citing works
The Power of Three: Dynactin associates with three dyneins under load for greater force productionPreprint
Rao, L., Liu, X., Arnold, M., McKenney, R. J., Stengel, K. R., Sidoli, S., Berger, F., & Gennerich, A. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.01.14.632506 · Cited by 6 · see citing works
Adaptor-mediated recruitment of three dyneins to dynactin enhances force generation
Rao, L., Liu, X., Arnold, M., Okada, K., McKenney, R. J., Stengel, K. R., Sidoli, S., Berger, F., & Gennerich, A. (2026) · Nature Cell Biology · doi:10.1038/s41556-026-01877-0 · Cited by 5 · see citing works
Landmark contributions of Chlamydomonas to understanding cilia
Sale, W. S., & Dutcher, S. K. (2023) · Elsevier eBooks · doi:10.1016/b978-0-12-822508-0.00014-9 · Cited by 4 · see citing works
Hot-wiring dynein-2 establishes roles for IFT-A in retrograde train assembly and motility
Gonçalves-Santos, F., De-Castro, A. R. G., Rodrigues, D. R. M., De-Castro, M. J. G., Gassmann, R., Abreu, C. M. C., & Dantas, T. J. (2023) · Cell Reports · doi:10.1016/j.celrep.2023.113337 · Cited by 4 · see citing works
Escorting Client Proteins to the Hsp90 Molecular Chaperone
Eickhoff, P., & Costa, A. (2017) · Structure · doi:10.1016/j.str.2017.06.007 · Cited by 4 · see citing works
Activation of cytoplasmic dynein through microtubule crossbridgingPreprint
Chakraborty, M., Toleikis, A., Siddiqui, N., Cross, R. A., & Straube, A. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.04.13.038950 · Cited by 3 · see citing works
Remodeling and activation mechanisms of outer arm dyneins revealed by cryo-EMPreprint
Kubo, S., Yang, S. K., Black, C. S., Dai, D., Valente-Paterno, M., Gaertig, J., Ichikawa, M., & Bui, K. H. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.11.30.404319 · Cited by 4 · see citing works
Quantitative proteomics reveals insights into the assembly of IFT trains and ciliary assembly
Shao, S., Chen, Y., Deng, H., & Pan, J. (2024) · Journal of Cell Science · doi:10.1242/jcs.262152 · Cited by 3 · see citing works
Switching dynein motors on and off
Pigino, G., & King, S. M. (2017) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.3429 · Cited by 3 · see citing works
Lorentzen, E., & Lechtreck, K. F. (2023) · Elsevier eBooks · doi:10.1016/b978-0-12-822508-0.00012-5 · Cited by 2 · see citing works
Modeling of Chemomechanical Coupling of Cytoplasmic Dynein Motors
Xie, P. (2024) · The Journal of Physical Chemistry B · doi:10.1021/acs.jpcb.4c04554 · Cited by 2 · see citing works
Lei, Y., Fukunaga, A., Imai, H., Yamamoto, R., Shimo‐Kon, R., Kamimura, S., Mitsuoka, K., Kato‐Minoura, T., Yagi, T., & Kon, T. (2025) · Cytoskeleton · doi:10.1002/cm.21987 · Cited by 2 · see citing works
Pedersen, L. B., Jurisch‐Yaksi, N., Schmid, F. M., & Christensen, S. T. (2022) · Elsevier eBooks · doi:10.1016/b978-0-12-821618-7.00209-1 · Cited by 2 · see citing works
Structure Makes a Difference: IFT Complex in Ciliary Function and Ciliopathy
Liu, Y., Zhang, Y., Ni, H., & Liu, P. (2025) · Cytoskeleton · doi:10.1002/cm.70033 · Cited by 1 · see citing works
He, H. K., Kubo, S., Chen, X., Lv, Q. H., Kage, A., & Ichikawa, M. (2025) · The EMBO Journal · doi:10.1038/s44318-025-00648-1 · Cited by 1 · see citing works
Single-molecule dynein motor mechanics in vitro
Yıldız, A. (2017) · Elsevier eBooks · doi:10.1016/b978-0-12-809470-9.00005-9 · Cited by 1 · see citing works
Yıldız, A., & Ishikawa, T. (2022) · Elsevier eBooks · doi:10.1016/b978-0-12-821618-7.00094-8 · Cited by 1 · see citing works
The regulatory function of the AAA4 ATPase domain of cytoplasmic dyneinPreprint
Liu, X., Rao, L., & Gennerich, A. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.09.20.305243
Initiation of ensemble kinesin-3 motility is regulated by the rigidity of cargo-motor attachmentPreprint
Lama, P., & Sirajuddin, M. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.12.02.470904
Yıldız, A. (2019) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.736492241.793565189
McKenney, R. J. (2020) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.736678701.793574791
Hot-wiring dynein-2 uncovers roles for IFT-A in retrograde train assembly and motilityPreprint
Gonçalves-Santos, F., De-Castro, A. R. G., Rodrigues, D. R. M., De-Castro, M. J. G., Gassmann, R., Abreu, C. M. C., & Dantas, T. J. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.05.10.539247
Imai, H., Kanazawa, R., Maeshima, T., Tran, D. P., Shimo‐Kon, R., Tokita, H., Miyata, T., Makino, F., Fujita, J., Kato, T., et al. (2026) · Journal of Molecular Biology · doi:10.1016/j.jmb.2026.169977
Primary cilia: master conductors of cellular communication in development and disease
Thomsen, O. K., Pigino, G., Pedersen, L. B., Pazour, G. J., Wachten, D., & Christensen, S. T. (2026) · Nature Reviews Nephrology · doi:10.1038/s41581-026-01129-2
- Authors
- Toropova, K., Mladenov, M., & Roberts, A. J.
- Affiliations
- Institute of Structural and Molecular Biology (GB)
- Corresponding author
- Roberts, Anthony J
- Venue
- Nature Structural & Molecular Biology
- Published
- 2017-04-10
- Volume
- 24
- Issue
- 5
- Pages
- 461-468
- ISSN
- 1545-9985 (ISSN-L)
- 1545-9993
- PMC
- PMC5420313
- OpenAlex
- W2607056421
- Cited by
- 85
- References
- 80
- Citations by year
- 2026: 4 · 2025: 5 · 2024: 6 · 2023: 8 · 2022: 12 · 2021: 7 · 2020: 16 · 2019: 12 · 2018: 9 · 2017: 6
- FWCI
- 7.81
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Structural & Molecular Biology (publishedVersion)
- PubMed (publishedVersion)
- BIROn (Birkbeck, University of London) (acceptedVersion)
- PubMed Central (acceptedVersion)
- UCL Discovery (University College London) (submittedVersion)
- Funders
- Wellcome Trust (104196/Z/14/Z)
- Biotechnology and Biological Sciences Research Council (BB/P008348/1)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic and Kidney Cyst Diseases
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Microtubule and mitosis dynamics
- Health Sciences › Medicine › Pulmonary and Respiratory Medicine › Cystic Fibrosis Research Advances
- Keywords
- retrograde intraflagellar transport, cilia, autoinhibition, stalk domain, kinesin-2, mechanochemistry
- MeSH terms
- Dyneins, Humans, Microscopy, Electron, Models, Biological, Models, Molecular, Protein Conformation, Kinesins, Protein Multimerization
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