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Cited by 284

The DOI matches its Crossref record; 36 of the 36 references it cites were found in a registry or an index.

Global disparities in SARS-CoV-2 genomic surveillance

Open access
Brito, Anderson F., Semenova, Elizaveta, Dudas, Gytis, Hassler, Gabriel W., Kalinich, Chaney C., Kraemer, Moritz U. G., Ho, Joses, Tegally, Houriiyah, Githinji, George, Agoti, Charles N., Matkin, Lucy E., Whittaker, Charles, Bulgarian SARS-CoV-2 sequencing group, Kantardjiev, Todor, Korsun, Nelly, Stoitsova, Savina, Dimitrova, Reneta, Trifonova, Ivelina, Dobrinov, Veselin, Grigorova, Lubomira, Stoykov, Ivan, Grigorova, Iliana, Gancheva, Anna, Communicable Diseases Genomics Network (Australia and New Zealand), Jennison, Amy, Leong, Lex, Speers, David, Baird, Rob, Cooley, Louise, Kennedy, Karina, de Ligt, Joep, Rawlinson, William, van Hal, Sebastiaan, Williamson, Deborah, COVID-19 Impact Project, Singh, Risha, Nathaniel-Girdharrie, SueMin, Edghill, Lisa, Indar, Lisa, St. John, Joy, Gonzalez-Escobar, Gabriel, Ramkisoon, Vernie, Brown-Jordan, Arianne, Ramjag, Anushka, Mohammed, Nicholas, Foster, Jerome E., Potter, Irad, Greenaway-Duberry, Sharra, George, Kenneth, Belmar-George, Sharon, Lee, John, Bisasor-McKenzie, Jacqueline, Astwood, Nadia, Sealey-Thomas, Rhonda, Laws, Hazel, Singh, Narine, Oyinloye, Ayoola, McMillan, Pearl, Hinds, Avery, Nandram, Naresh, Parasram, Roshan, Khan-Mohammed, Zobida, Charles, Shawn, Andrewin, Aisha, Johnson, David, Keizer-Beache, Simone, Oura, Chris, Pybus, Oliver G., Faria, Nuno R., Danish Covid-19 Genome Consortium, Stegger, Marc, Albertsen, Mads, Fomsgaard, Anders, Rasmussen, Morten, Fiocruz COVID-19 Genomic Surveillance Network, Khouri, Ricardo, Naveca, Felipe, Graf, Tiago, Miyajima, Fábio, Wallau, Gabriel, Motta, Fernando, GISAID core curation team, Khare, Shruti, Freitas, Lucas, Schiavina, Constanza, Bach, Gunter, Schultz, Mark B., Chew, Yi Hong, Makheja, Meera, Born, Priscila, Calegario, Gabriela, Romano, Sofia, Finello, Juan, Diallo, Amadou, Lee, Raphael T. C., Xu, Ya Ni, Yeo, Winston, Tiruvayipati, Suma, Yadahalli, Shilpa, Network for Genomic Surveillance in South Africa (NGS-SA), Wilkinson, Eduan, Iranzadeh, Arash, Giandhari, Jennifer, Doolabh, Deelan, Pillay, Sureshnee, Ramphal, Upasana, San, James E., Msomi, Nokukhanya, Mlisana, Koleka, von Gottberg, Anne, Walaza, Sibongile, Ismail, Arshad, Mohale, Thabo, Engelbrecht, Susan, Van Zyl, Gert, Preiser, Wolfgang, Sigal, Alex, Hardie, Diana, Marais, Gert, Hsiao, Marvin, Korsman, Stephen, Davies, Mary-Ann, Tyers, Lynn, Mudau, Innocent, York, Denis, Maslo, Caroline, Goedhals, Dominique, Abrahams, Shareef, Laguda-Akingba, Oluwakemi, Alisoltani-Dehkordi, Arghavan, Godzik, Adam, Wibmer, Constantinos K., Martin, Darren, Lessells, Richard J., Bhiman, Jinal N., Williamson, Carolyn, de Oliveira, Tulio, Swiss SARS-CoV-2 Sequencing Consortium, Chen, Chaoran, Nadeau, Sarah, du Plessis, Louis, Beckmann, Christiane, Redondo, Maurice, Kobel, Olivier, Noppen, Christoph, Seidel, Sophie, de Souza, Noemie Santamaria, Beerenwinkel, Niko, Topolsky, Ivan, Jablonski, Philipp, Fuhrmann, Lara, Dreifuss, David, Jahn, Katharina, Ferreira, Pedro, Posada-Céspedes, Susana, Beisel, Christian, Denes, Rebecca, Feldkamp, Mirjam, Nissen, Ina, Santacroce, Natascha, Burcklen, Elodie, Aquino, Catharine, de Gouvea, Andreia Cabral, Moccia, Maria Domenica, Grüter, Simon, Sykes, Timothy, Opitz, Lennart, White, Griffin, Neff, Laura, Popovic, Doris, Patrignani, Andrea, Tracy, Jay, Schlapbach, Ralph, Dermitzakis, Emmanouil, Harshman, Keith, Xenarios, Ioannis, Pegeot, Henri, Cerutti, Lorenzo, Penet, Deborah, Stadler, Tanja, Howden, Benjamin P., Sintchenko, Vitali, Zuckerman, Neta S., Mor, Orna, Blankenship, Heather M., de Oliveira, Tulio, Lin, Raymond T. P., Siqueira, Marilda Mendonça, Resende, Paola Cristina, Vasconcelos, Ana Tereza R., Spilki, Fernando R., Aguiar, Renato Santana, Alexiev, Ivailo, Ivanov, Ivan N., Philipova, Ivva, Carrington, Christine V. F., Sahadeo, Nikita S. D., Branda, Ben, Gurry, Céline, Maurer-Stroh, Sebastian, Naidoo, Dhamari, von Eije, Karin J., Perkins, Mark D., van Kerkhove, Maria, Hill, Sarah C., Sabino, Ester C., Pybus, Oliver G., Dye, Christopher, Bhatt, Samir, Flaxman, Seth, Suchard, Marc A., Grubaugh, Nathan D., Baele, Guy, Faria, Nuno R.·2022·Nature Communications
DOI 10.1038/s41467-022-33713-y
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Abstract

Genomic sequencing is essential to track the evolution and spread of SARS-CoV-2, optimize molecular tests, treatments, vaccines, and guide public health responses. To investigate the global SARS-CoV-2 genomic surveillance, we used sequences shared via GISAID to estimate the impact of sequencing intensity and turnaround times on variant detection in 189 countries. In the first two years of the pandemic, 78% of high-income countries sequenced >0.5% of their COVID-19 cases, while 42% of low- and middle-income countries reached that mark. Around 25% of the genomes from high income countries were submitted within 21 days, a pattern observed in 5% of the genomes from low- and middle-income countries. We found that sequencing around 0.5% of the cases, with a turnaround time <21 days, could provide a benchmark for SARS-CoV-2 genomic surveillance. Socioeconomic inequalities undermine the global pandemic preparedness, and efforts must be made to support low- and middle-income countries improve their local sequencing capacity.

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Authors
Brito, A. F., Semenova, E., Dudas, G., Hassler, G. W., Kalinich, C. C., Kraemer, M. U. G., Ho, J., Tegally, H., Githinji, G., Agoti, C. N., Matkin, L. E., Whittaker, C., Bulgarian SARS-CoV-2 sequencing group, Kantardjiev, T., Korsun, N., Stoitsova, S., Dimitrova, R., Trifonova, I., Dobrinov, V., Grigorova, L., Stoykov, I., Grigorova, I., Gancheva, A., Communicable Diseases Genomics Network (Australia and New Zealand), Jennison, A., Leong, L., Speers, D., Baird, R., Cooley, L., Kennedy, K., de Ligt, J., Rawlinson, W., van Hal, S., Williamson, D., COVID-19 Impact Project, Singh, R., Nathaniel-Girdharrie, S., Edghill, L., Indar, L., St. John, J., Gonzalez-Escobar, G., Ramkisoon, V., Brown-Jordan, A., Ramjag, A., Mohammed, N., Foster, J. E., Potter, I., Greenaway-Duberry, S., George, K., Belmar-George, S., Lee, J., Bisasor-McKenzie, J., Astwood, N., Sealey-Thomas, R., Laws, H., Singh, N., Oyinloye, A., McMillan, P., Hinds, A., Nandram, N., Parasram, R., Khan-Mohammed, Z., Charles, S., Andrewin, A., Johnson, D., Keizer-Beache, S., Oura, C., Pybus, O. G., Faria, N. R., Danish Covid-19 Genome Consortium, Stegger, M., Albertsen, M., Fomsgaard, A., Rasmussen, M., Fiocruz COVID-19 Genomic Surveillance Network, Khouri, R., Naveca, F., Graf, T., Miyajima, F., Wallau, G., Motta, F., GISAID core curation team, Khare, S., Freitas, L., Schiavina, C., Bach, G., Schultz, M. B., Chew, Y. H., Makheja, M., Born, P., Calegario, G., Romano, S., Finello, J., Diallo, A., Lee, R. T. C., Xu, Y. N., Yeo, W., Tiruvayipati, S., Yadahalli, S., Network for Genomic Surveillance in South Africa (NGS-SA), Wilkinson, E., Iranzadeh, A., Giandhari, J., Doolabh, D., Pillay, S., Ramphal, U., San, J. E., Msomi, N., Mlisana, K., von Gottberg, A., Walaza, S., Ismail, A., Mohale, T., Engelbrecht, S., Van Zyl, G., Preiser, W., Sigal, A., Hardie, D., Marais, G., Hsiao, M., Korsman, S., Davies, M.-A., Tyers, L., Mudau, I., York, D., Maslo, C., Goedhals, D., Abrahams, S., Laguda-Akingba, O., Alisoltani-Dehkordi, A., Godzik, A., Wibmer, C. K., Martin, D., Lessells, R. J., Bhiman, J. N., Williamson, C., de Oliveira, T., Swiss SARS-CoV-2 Sequencing Consortium, Chen, C., Nadeau, S., du Plessis, L., Beckmann, C., Redondo, M., Kobel, O., Noppen, C., Seidel, S., de Souza, N. S., Beerenwinkel, N., Topolsky, I., Jablonski, P., Fuhrmann, L., Dreifuss, D., Jahn, K., Ferreira, P., Posada-Céspedes, S., Beisel, C., Denes, R., Feldkamp, M., Nissen, I., Santacroce, N., Burcklen, E., Aquino, C., de Gouvea, A. C., Moccia, M. D., Grüter, S., Sykes, T., Opitz, L., White, G., Neff, L., Popovic, D., Patrignani, A., Tracy, J., Schlapbach, R., Dermitzakis, E., Harshman, K., Xenarios, I., Pegeot, H., Cerutti, L., Penet, D., Stadler, T., Howden, B. P., Sintchenko, V., Zuckerman, N. S., Mor, O., Blankenship, H. M., de Oliveira, T., Lin, R. T. P., Siqueira, M. M., Resende, P. C., Vasconcelos, A. T. R., Spilki, F. R., Aguiar, R. S., Alexiev, I., Ivanov, I. N., Philipova, I., Carrington, C. V. F., Sahadeo, N. S. D., Branda, B., Gurry, C., Maurer-Stroh, S., Naidoo, D., von Eije, K. J., Perkins, M. D., van Kerkhove, M., Hill, S. C., Sabino, E. C., Pybus, O. G., Dye, C., Bhatt, S., Flaxman, S., Suchard, M. A., Grubaugh, N. D., Baele, G., & Faria, N. R.
Venue
Nature Communications
Publisher
Springer Science and Business Media LLC
Published
2022-11-16
Volume
13
Issue
1
Pages
7003-7003
ISSN
2041-1723 (ISSN-L)
DOI
10.1038/s41467-022-33713-y
OpenAlex
W4309338001
Cited by
284
References
36
FWCI
25.52
Type
journal article
Language
en
Open access
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Brito, A. F., Semenova, E., Dudas, G., Hassler, G. W., Kalinich, C. C., Kraemer, M. U. G., Ho, J., Tegally, H., Githinji, G., Agoti, C. N., Matkin, L. E., Whittaker, C., Bulgarian SARS-CoV-2 sequencing group, Kantardjiev, T., Korsun, N., Stoitsova, S., Dimitrova, R., Trifonova, I., Dobrinov, V., . . . Faria, N. R. (2022). Global disparities in SARS-CoV-2 genomic surveillance. Nature Communications. https://doi.org/10.1038/s41467-022-33713-y

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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

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