Cited by 474Gut microbiota and healthClostridium difficile and Clostridium perfringens researchPlant-Microbe Interactions and Immunity

The DOI matches its Crossref record; 196 of the 196 references it cites were found in a registry or an index.

Microbiota-mediated colonization resistance: mechanisms and regulation

Open access

Caballero-Flores, Gustavo, Pickard, Joseph M., Núñez, Gabriel·2023·Nature Reviews Microbiology

DOI 10.1038/s41579-022-00833-7PMC PMC10249723

Open this paper in CoChat — free account Open PDF

Abstract

A dense and diverse microbial community inhabits the gut and many epithelial surfaces. Referred to as the microbiota, it co-evolved with the host and is beneficial for many host physiological processes. A major function of these symbiotic microorganisms is protection against pathogen colonization and overgrowth of indigenous pathobionts. Dysbiosis of the normal microbial community increases the risk of pathogen infection and overgrowth of harmful pathobionts. The protective mechanisms conferred by the microbiota are complex and include competitive microbial-microbial interactions and induction of host immune responses. Pathogens, in turn, have evolved multiple strategies to subvert colonization resistance conferred by the microbiota. Understanding the mechanisms by which microbial symbionts limit pathogen colonization should guide the development of new therapeutic approaches to prevent or treat disease.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

Integrity signals

Registry

Crossref · 10.1038/s41579-022-00833-7

Cites

196 of 196 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

A core gut microbiome in obese and lean twins
Turnbaugh, P. J., Hamady, M., Yatsunenko, T., Cantarel, B. L., Duncan, A., Ley, R. E., Sogin, M. L., Jones, W. J., Roe, B. A., Affourtit, J. P., et al. (2009) · Nature · doi:10.1038/nature07540 · Cited by 7,823
Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns
Dominguez-Bello, M. G., Costello, E. K., Contreras, M., Magris, M., Hidalgo, G., Fierer, N., & Knight, R. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1002601107 · Cited by 4,774
Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria
Ivanov, I. I., Atarashi, K., Manel, N., Brodie, E. L., Shima, T., Karaoz, U., Wei, D., Goldfarb, K. C., Santee, C. A., Lynch, S. V., et al. (2009) · Cell · doi:10.1016/j.cell.2009.09.033 · Cited by 4,554
Vaginal microbiome of reproductive-age women
Ravel, J., Gajer, P., Abdo, Z., Schneider, G. M., Koenig, S. S. K., McCulle, S. L., Karlebach, S., Gorle, R., Russell, J., Tacket, C. O., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1002611107 · Cited by 4,254
The impact of the gut microbiota on human health: an integrative view
Clemente, J. C., Ursell, L. K., Parfrey, L. W., & Knight, R. (2012) · Cell · doi:10.1016/j.cell.2012.01.035 · Cited by 3,710
Duodenal Infusion of Donor Feces for Recurrent Clostridium difficile
van Nood, E., Vrieze, A., Nieuwdorp, M., Fuentes, S., Zoetendal, E. G., de Vos, W. M., Visser, C. E., Kuijper, E. J., Bartelsman, J. F. W. M., Tijssen, J. G. P., et al. (2013) · New England Journal of Medicine · doi:10.1056/nejmoa1205037 · Cited by 3,708
Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life
Bäckhed, F., Roswall, J., Peng, Y., Feng, Q., Jia, H., Kovatcheva-Datchary, P., Li, Y., Xia, Y., Xie, H., Zhong, H., et al. (2015) · Cell Host & Microbe · doi:10.1016/j.chom.2015.04.004 · Cited by 3,315
Topographical and Temporal Diversity of the Human Skin Microbiome
Grice, E. A., Kong, H. H., Conlan, S., Deming, C. B., Davis, J., Young, A. C., Program, N. C. S., Bouffard, G. G., Blakesley, R. W., Murray, P. R., et al. (2009) · Science · doi:10.1126/science.1171700 · Cited by 2,953
A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility
Desai, M. S., Seekatz, A. M., Koropatkin, N. M., Kamada, N., Hickey, C. A., Wolter, M., Pudlo, N. A., Kitamoto, S., Terrapon, N., Muller, A., et al. (2016) · Cell · doi:10.1016/j.cell.2016.10.043 · Cited by 2,805
Self-citation
The NIH Human Microbiome ProjectPreprint
The NIH HMP Working Group, Peterson, J. L., Garges, S., Giovanni, M. Y., McInnes, P., Wang, L., Schloss, J. A., Bonazzi, V. R., McEwen, J. E., Wetterstrand, K. A., et al. (2009) · Genome Research · doi:10.1101/gr.096651.109 · Cited by 2,168

Show all 196 references

Research works printed but not linked: 1

Hutchinson, G. E. An Introduction to Population Ecology (Yale Univ. Press, 1978).

Sorted by citations

Items 401–474 of 474

Type VI secretion system: Central regulator of antimicrobial resistance dynamics via indirect mechanisms
Li, Z., Huang, J., Li, Y., Cao, F., Gao, X., Lin, Y., & (23143), Y. L. (2026) · Microbiological Research · doi:10.1016/j.micres.2026.128574
Regulation Progresses of Selenium Improving Intestinal and Extra-Intestinal Tissues Health Through Regulating Gut Microbiota
Fan, Y., Zhang, W., Zhuang, W., Zhao, X., Hu, Y., Li, T., Cui, X., Wang, C., Zhang, L., 罗绪刚, et al. (2026) · Biology · doi:10.3390/biology15110887
Harnessing the gut microbiota: new frontiers in treating childhood epilepsy
Bejaoui, S., D’Amico, F., Messana, T., Candela, M., & Turroni, S. (2026) · Global Pediatrics · doi:10.1016/j.gpeds.2026.100354
Commensal microbiota–coated biohybrid implants induce antibiofilm, osteogenic, and immunomodulatory responses in a human 3D immunocompetent model
Lohar, R., Nawaz, T., Landes, T., Schaefer-Dreyer, P., Pott, P., Pflaum, M., Stiesch, M., & Rahim, M. I. (2026) · Bioactive Materials · doi:10.1016/j.bioactmat.2026.06.006
Tea and digestive system health: integrating gut microbiota-involved ADME and personalized nutrition for gastrointestinal disorders intervention
Yue, R., Wen, Y., Zhao, S., Liu, X., Luo, L., Liu, Y., & Zeng, L. (2026) · Critical Reviews in Food Science and Nutrition · doi:10.1080/10408398.2026.2684712
The human breast milk microbiome: a landscape review of its composition, origins, and impact on infant health
Koynova, R. D. (2026) · Archives of Microbiology · doi:10.1007/s00203-026-05010-5
Antimicrobial Resistance in Patients with Sepsis
Zavascki, A. P., Gales, A. C., Mergulhão, P., & Kalil, A. C. (2026) · Critical Care Clinics · doi:10.1016/j.ccc.2026.05.006
Translating priority effects and niche engineering into rational microbiome therapeutics across the gut-lung axis
Chen, H., Zhang, S., Bai, Y., Yu, L., & Gu, Y. (2026) · Frontiers in Microbiology · doi:10.3389/fmicb.2026.1871211
Differential use of Stickland fermentation by Lachnospiraceae regulates Clostridioides difficile growth
Moore, A. E., Leclercq, G. M. E., Moffatt, L. S., Fitzgerald, B. G., & Sorbara, M. T. (2026) · Gut Microbiology · doi:10.1016/j.gutmic.2026.100015
Gut microbiota from health to disease: A role for biofilms?
Buret, A. G., & Allain, T. (2026) · Elsevier eBooks · doi:10.1016/b978-0-443-40306-4.00011-9
Evaluation of Limosilactobacillus reuteri ATCC PTA 6127 Reveals Multilayered Antimicrobial and Epithelial Barrier-Supportive Effects in a Canine Epithelial Model
Walker, J., Rekima, A., Udrea, A. C., Larsen, K. B., Schwarzenberg, A., Bak, S. Y., Christensen, N., Gerdes, S., Zeng, W., Hibberd, A. A., et al. (2026) · Microorganisms · doi:10.3390/microorganisms14071422 · Cited by 1
Ecology of the gut microbiome
Bakkeren, E. (2026) · Science · doi:10.1126/science.aej2365
Dietary chitosan alleviates Enterohemorrhagic Escherichia coli induced intestinal injury by reducing bacterial colonization and restoring mucosal immune homeostasis in weaned piglets
Liu, J., Xie, K., Li, X. L., Zhu, Q., Luo, Y., Zheng, P., Mao, X., Yan, H., Wang, Q., Good, L., et al. (2026) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2026.153387
Age-associated gut microbiome succession, colonization resistance, and relative resistome patterns in an antibiotic-restricted infant cohort
Chen, M., Zhang, S., Lu, M., Zhu, D., Xiao, M., Liao, Y., Li, Y., Zhou, T., Wang, M., & Song, Q. (2026) · Frontiers in Microbiology · doi:10.3389/fmicb.2026.1862116
An acidic welcome: How microbial metabolites keep fungi in line
Heredia, M. Y., & Caballero-Flores, G. G. (2026) · Cell Host & Microbe · doi:10.1016/j.chom.2026.06.011
Self-citation
Evaluation of the Role of Probiotics in Reducing the Prevalence of Fungal and Parasitic Infections in the Gastrointestinal Tract
Talib, H. M., Hadi, M. S., Qasim, M. M., Ghfil, Z. A. H. A., & Al-Husseiny, I. A. (2026) · International Journal of Medical Parasitology and Epidemiology Sciences · doi:10.34172/ijmpes.6264
Gut microbiota dysbiosis in sepsis and sepsis-associated organ injury: mechanisms, gut-organ axes, and therapeutic strategies
Zhang, T., Wang, Q., Qiu, W., Zhang, D. H., & Shang, Y. (2026) · Frontiers in Microbiology · doi:10.3389/fmicb.2026.1886655
The Gut–Iron–Immune Axis in Severe Anaemia and Bacteraemia
Abuga, K. M., Bate, M. Y., & Atkinson, S. H. (2026) · Nutrients · doi:10.3390/nu18172753
Mobile genetic elements and antibiotic resistance in ESKAPE pathogens
Chaudhari, M., Basu, J., Kashyap, J., Dash, J., & Deb, S. (2026) · Elsevier eBooks · doi:10.1016/b978-0-443-26726-0.00001-3
Thiazolidinedione Use and Risk of Bacterial Enteric Infection Among Adults With Type 2 Diabetes Mellitus
Birabaharan, M., Kaelber, D. C., Nizet, V., & Zarrinpar, A. (2026) · Open Forum Infectious Diseases · doi:10.1093/ofid/ofag457
Expansion resistance against genotoxic E. coli: protective effects of Bifidobacterium pseudolongum in DSS-induced colitis in mice
Ajayi, A. S., Fragoso, G., Calvé, A., Gerkins, C., Maumy, T., McCartney, C., & Santos, M. M. (2026) · Frontiers in Microbiology · doi:10.3389/fmicb.2026.1877186
Mechanistic and machine learning models design human gut consortia that robustly inhibit Clostridioides difficilePreprint
Im, H., Liu, Y., Thompson, J. C., Miranda-Contreras, G. I., Loke, K., Bacon, R., Lucas, L., Amador‐Noguez, D., Gray, S. M., & Venturelli, O. S. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.08.04.742850
From resistance mechanisms to therapy: Antimicrobial resistance in Gram-negative bacteria
Lee, M. (2026) · The Journal of Microbiology · doi:10.71150/jm.2604017
Soybean fine-tunes defense-growth trade-offs via transcriptional reprogramming during beneficial P. chlororaphis colonization
Wei, D., Chen, L., Li, Y., Xie, J., Zhou, Y., Wang, Z., Li, Y., Chun, S. O. N. G., Yong, T., Yang, W., et al. (2026) · PLANT PHYSIOLOGY · doi:10.1093/plphys/kiag577
Longitudinal profiling of upper respiratory tract microbiota and metabolome in hospitalized COVID-19 convalescents: a 3-year prospective cohort study
Zhang, Z., Gao, L., Guan, L., Qian, Z., Li, J., & Tong, Z. (2026) · Journal of Translational Medicine · doi:10.1186/s12967-026-08697-8
Gut microbiota dysbiosis and joint diseases: advances in the gut-joint axis
Li, H., Li, G., & Liu, J. (2026) · Frontiers in Immunology · doi:10.3389/fimmu.2026.1911852
KEGG-Based Functional Signatures Complement Taxonomic Profiles Associated with Spontaneous Decolonisation of Carbapenem-Resistant Enterobacterales
Lima, O., Rodríguez-Costas, N., Pérez-Rodríguez, M., Daviña-Núñez, C., Represa, M., Rubiñán, P., Alvarez, M., Ávila-Núñez, M., Filgueira, A., Portela, C., et al. (2026) · International Journal of Molecular Sciences · doi:10.3390/ijms27167092
A programmed reset mechanism primes Clostridioides difficile virulence at the onset of infection
Gadda, N. C., Santos-Santiago, J. A., Sellers, R. S., & Tamayo, R. (2026) · Science Advances · doi:10.1126/sciadv.aeg1542
Fecal Microbiota Transplantation Accelerates Clearance of Carbapenemase-Producing Enterobacterales Intestinal Carriage: Influence of Recipient Gut Microbiome Ecology
Lee, I., Suk, K. T., Park, J.-Y., Yong, D., Kim, D. J., Kim, B. S., & Lee, S. S. (2026) · The Journal of Infectious Diseases · doi:10.1093/infdis/jiag414
Smart-delivery systems for intestinal mucosal homeostasis: From barrier penetration to precision regulation
Shi, M., Li, X., Li, J., Huang, Y., Wang, W., Di, L., Chen, J., & Wang, R. (2026) · Journal of Controlled Release · doi:10.1016/j.jconrel.2026.115258
Synthetic biology strategies for engineering microbial therapeutics in metabolic diseases and cancer
Onoja, B. A., Agada, S. A., Aggad, W. S., Almohaimeed, H. M., Alum, E. U., Abass, K. S., Alum, B. N., & Uti, D. E. (2026) · Microbiological Research · doi:10.1016/j.micres.2026.128682
Molecular Tools
Foxman, B., & Manning, S. D. (2026) · Elsevier eBooks · doi:10.1016/b978-0-443-21471-4.00011-6
Phocaeicola vulgatus mpk colonization protects epithelial cells from Candida albicans infection
Hammer, M. L., Niemiec, M. J., Baumgarten, J., Auge, I., Gorki, F. S., Steimle, A., Frick, J.-S., Walker, A., & Jacobsen, I. D. (2026) · microLife · doi:10.1093/femsml/uqag030
Metabolic strategies of Enterobacteriaceae gut colonization
Schubert, C., & Hardt, W. (2026) · Nature Reviews Microbiology · doi:10.1038/s41579-026-01354-3 · Cited by 2
Immune Cell–Mediated Causal Link Between Gut Microbiota Traits and Childhood Asthma: Evidence From Mendelian Randomization and Metagenomic Sequencing
Shi, R., Yang, Z., Zhou, X., Xu, D., Xue, W., An, L., Zhang, X., & Huang, Y. (2026) · The Clinical Respiratory Journal · doi:10.1111/crj.70227 · Cited by 1
The common evolution of fungicide persistence in cryptococcosis patientsPreprint
Xie, Y., Ke, W., Fan, X., Xu, H., Wang, W., Zeng, Z., Zhang, N., Ma, H., Tang, Z., Zhu, H., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.08.26.747313
FMT alleviates multidrug-resistant Salmonella enterica-induced diarrhea and is associated with loss of IncHI2A-associated resistance determinants in mice
Xia, P., Wu, H., Chen, W., Wang, D., Xu, S., Yang, Y., Zeng, T., & Xia, L. (2026) · Frontiers in Microbiology · doi:10.3389/fmicb.2026.1913730
Post-Assay Photogelation Enables Flow-Cytometric Sorting and Recovery of Bacterial Cocultures from Microfluidic DropletsPreprint
Alshareedah, I., Green, K. M., Shin, S. M., Jha, R. K., & Kumar, A. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.08.27.747404
Healthy subjects gut microbiome modulation by Bacillus coagulans BCP92
Shaikh, S. S., & Malek, F. (2026) · Medicine · doi:10.1097/md.0000000000050435
Fermented foods as a strategy to reduce heavy metal toxicity in humans: Mechanistic insights and emerging evidence
Esfandi, R., Lacika, J. F., Thomas, R., Burton, J. P., & Sánchez-Lafuente, C. L. (2026) · Trends in Food Science & Technology · doi:10.1016/j.tifs.2026.106049
The Nexus of Gut Microbiome, Microbial Metabolites, and Colonization Resistance Against Enteric Pathogens
Jiang, M., Yang, M., Du, P., & Sun, Z. (2026) · Biomolecules · doi:10.3390/biom16091291
Aging and Viral Respiratory Infections: Focus on Vitamin D and Microbiota
Falahi, S., Abdoli, A., Aboualigalehdari, E., Hashempour, T., & Kenarkoohi, A. (2026) · BioMed Research International · doi:10.1155/bmri/8581187
Structural characterization and gut health-associated effects of an acidic pectic polysaccharide fraction from Cyathula officinalis aerial biomass
Qiu, Y., Cai, C., Chen, S., Wu, L., Shui, S., Zou, Y., Li, R., Tian, M., & Hai, L. A. N. (2026) · Food Bioscience · doi:10.1016/j.fbio.2026.109986
From predicted bacteriocins to ecological function
Wayah, S. B., Arakawa, K., & Philip, K. (2026) · Current Research in Microbial Sciences · doi:10.1016/j.crmicr.2026.100662
Why probiotics fail: gut niche tension as the missing variable?
Печникова, Н. А., Zoikidou, O., Робертовна, Д. А., Choli‐Papadopoulou, T., Aggeli, A., & Yaremenko, A. V. (2026) · Gut Microbes · doi:10.1080/19490976.2026.2728333
Probiotic supplementation increases fecal TLR4 agonists without improving disease activity in juvenile idiopathic arthritis: a randomized placebo-controlled trial
Durand, C., Eveillard, L.-A., Labouret, M., Aeschlimann, F. A., Bélot, A., Brochard, K., Chassaing, B., Boizeau, P., Boulkedid, R., Carbasse, A., et al. (2026) · Gut Microbes · doi:10.1080/19490976.2026.2728351
Multi-omics evidence reveals robust airborne–human resistome connectivity driven by high-risk ARGs and mediated by Staphylococcus
Chen, Z., Gao, F.-Z., Li, P., Bai, H., He, L.-Y., Liu, Y.-S., & Ying, G. (2026) · Environment International · doi:10.1016/j.envint.2026.110525
Prophage-encoding engineered bacteria enable prophylactic lytic phage therapy for enteric infection in mice
Bataglioli, R. A., Baaziz, H., Avalos, H., Smith, L., Baker, Z., Makhlouf, R., Barreira, D. D. S., Kaur, H., Southard, T., & Hsu, B. B. (2026) · Nature Microbiology · doi:10.1038/s41564-026-02484-3
Microbiota of the Sigmoid Colon Mucus in Complicated Forms of Diverticular Disease
Рашидовна, Я. Д., Shakirov, R. R., Pankratova, Y. S., Senina, A. M., Markelova, M., Khusnutdinova, D. R., Grigoryeva, T. V., & Karpukhin, O. Y. (2026) · Bulletin of Experimental Biology and Medicine · doi:10.1007/s10517-026-06718-6
Probiotic consortia for poultry gut health and environmental resistome control: a critical evaluation of the evidence gap
Boranbayeva, G., Ualieva, P. S., Mkilima, T., & Abzhalelov, A. (2026) · Frontiers in Environmental Science · doi:10.3389/fenvs.2026.1946922
Different gut microbiome dysbioses impact the evolutionary fate of hypervirulent Klebsiella pneumoniae
Lim, C., Zheng, J., Cheam, G., Yong, M., Chen, H., Ting, A., Chen, Y., Wang, Q., Nagarajan, N., & Gan, Y. (2026) · iMeta · doi:10.1002/imt2.70175
Mikroorganizmaların Dünyası: Küçük Ölçek, Büyük Güç
Çalı, A. (2026) · Özgür Yayınları eBooks · doi:10.58830/ozgur.pub1441.c5784
Effect of oral gavage or intracloacal administration of Escherichia coli or Salmonella at hatch on enteric colonization and early performance in broiler chicks
Selby, C. M., Baxter, M. F. A., Forga, A. F., Castellanos, I., Vuong, C. N., Hargis, B. M., Parsons, B., & Graham, D. (2026) · Research in Veterinary Science · doi:10.1016/j.rvsc.2026.106420
Early-Life Oat Supplementation Is Associated with Altered Cecal Microbiota and Microbial Metabolic Profiles and Reduced Campylobacter jejuni Colonization in Broiler Chickens
Dessalegn, B., Debelo, M., Palmieri, N., Dublecz, K., Heß, M., & Awad, W. A. (2026) · International Journal of Molecular Sciences · doi:10.3390/ijms27198607
Remodeling the gut microbiota: mechanistic insights into probiotic-mediated alleviation of weaning stress in piglets
Zhuo, W., Yu, Z., Liu, K., Zhang, W., Ma, Z., 徐泽君, Wang, J., Li, T., Zhu, G., Wang, B., et al. (2026) · Frontiers in Immunology · doi:10.3389/fimmu.2026.1964247
Within-host evolution and transmission of a human gut symbiont across ecological scales
Vasquez, K. S., Wong, D. P. G. H., Kotaka, K., McKeithen-Mead, S. A., Pedro, M. F., Yu, F. B., Jain, S., Meng, X., Higginbottom, S. K., DeFelice, B. C., et al. (2026) · Cell Host & Microbe · doi:10.1016/j.chom.2026.09.002 · Cited by 11
Divalent Metal Ion Dictates Probiotic Intestinal Retention and Mucoadhesion
Li, Y., Song, H., Shi, J., Han, H., Li, L., Yu, Z., & Gu, Q. (2026) · ACS Applied Materials & Interfaces · doi:10.1021/acsami.6c15117
Beyond the triad: why ecological theory must anchor One Health
Bartlow, A. W., & Fair, J. M. (2026) · One Health · doi:10.1016/j.onehlt.2026.101607
Microbiota-constrained bacterial density limits phage infection in the gut and allows persistence of susceptible cells
Bertola, A., Wenner, N., Rocha, L. F. L., Keys, T. G., & Diard, M. (2026) · iScience · doi:10.1016/j.isci.2026.117433
Microbiome ecology and antibiotic treatment failure: resistance spread, microbial competition and community engineering
Wheeler, M., & Bakkeren, E. (2026) · Microbial Genomics · doi:10.1099/mgen.0.001856
Microbiota-host immunity interactions: Insights from the zebrafish teleost model
Brugman, S. (2026) · Fish physiology · doi:10.1016/bs.fp.2026.08.002
Gut microbial metabolism of amino acids and its impact on enteric infections
Jaswal, K., & Behnsen, J. (2026) · Infection and Immunity · doi:10.1128/iai.00298-26
Early-life gut microbiome assembly in low- and middle-income countries: Interactions between undernutrition, infection, and environmental enteric dysfunction
Mijic, L., Shaheen, M., Chunga, A., Kiu, R., & Hall, L. J. (2026) · Gut Microbiology · doi:10.1016/j.gutmic.2026.100020
Cannabinoid receptor 1 activity promotes microbial dysbiosis by stimulating the oxygen-dependent expansion of EnterobacteriaceaePreprint
Mitchell, M. K., Carty, M. A., Snow, N. L., Archambault, M. T., Budsberg, A. E., Carrillo, E. V., Vignieri, E. E., Older, E. A., Rometo, O. L., van de Wal, L. E., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.10.10.758071
WISH-barcoding of Salmonella Typhimurium ATCC14028s strains for population dynamics studies in vivo
Schubert, C., Kim, J., Näpflin, N. C., Hoos, M., Huuskonen, J., von Mering, C., & Hardt, W. (2026) · PLoS ONE · doi:10.1371/journal.pone.0349327
Screening of constipation-alleviating probiotics targeting key bile acids and the mechanism of the selected strain Bifidobacterium longum BL2
Wang, L., Yang, Y., Xue, Y., Liang, M., Guo, Y., Yang, Y., Cheng, W., Lu, W., Wang, G., Zhai, Q., et al. (2026) · Food Bioscience · doi:10.1016/j.fbio.2026.110283
DksA regulates intestinal colonization of Klebsiella pneumoniae through metabolic plasticity
Wan, J., Wang, Y., Wang, L., Li, Y., Xiong, S., Chu, X., Zhou, D., Li, J., Li, M., Xia, X., et al. (2026) · Microbiology Spectrum · doi:10.1128/spectrum.01949-26
Drp1 deficiency enhances macrophage efferocytosis and partially restores gut microbial dysbiosis in colitisPreprint
Huang, C., Liao, Y., Zhang, Y., Guo, X., Xiang, L.-L., Zhang, L.-T., Ye, Z., Zhao, Y., Li, Y., Zhou, Y.-J., et al. (2026) · Research Square · doi:10.21203/rs.3.rs-11198364/v1
Secretory bile salt hydrolases regulate niche displacement and gut colonization of vancomycin-resistant Enterococcus
Hasegawa, M., Koizumi, Y., Das, N. K., Zhang, L., Lyssiotis, C. A., Shah, Y. M., Fukuda, S., Núñez, G., & Inohara, N. (2026) · Cell Host & Microbe · doi:10.1016/j.chom.2026.09.020
Self-citation
From enemy to ally: an update for dental professionals on oral microbiome ecology and its systemic implications
Coelho, C. P. E. S., Munduri, J. M. D. S., Oliveira, J. A. D. V. C., Moreira, M. I., de Cena, J. A., & Damé‐Teixeira, N. (2026) · Journal of Applied Oral Science · doi:10.1590/1678-7765-2026-0384
P-GRISS Program: An Integrated Approach for the Prevention of Healthcare-Associated Infections and Rapid Management of Sepsis in Intensive Care
Scarano, A., Carlo, F. D., Gehrke, S. A., Faroni, G. B., & Caracciolo, F. (2026) · Antibiotics · doi:10.3390/antibiotics15111061
Microbial communication networks governing the ecosystem dynamics of Salmonella in poultry environments: ecological interactions, colonization resistance, and emerging control strategies
Naeem, M. (2026) · Frontiers in Bioinformatics · doi:10.3389/fbinf.2026.1908527
Water-absorbent beads-induced ileal obstruction in children: a retrospective case series and translational rat model study
Dong, P., Wu, M., Gong, S., Fan, X., Zhao, Q., Yue, J., Chen, B., 王立祥, Chen, J., Teng, Z., et al. (2026) · Frontiers in Medicine · doi:10.3389/fmed.2026.1980960
Sleeper agents: asymptomatic Acinetobacter colonization and underlying mechanisms
Clark, R. C., & Palmer, L. D. (2026) · Infection and Immunity · doi:10.1128/iai.00290-26

Authors: Caballero-Flores, G., Pickard, J. M., & Núñez, G.
Affiliations: University of Michigan (US)
Corresponding author: Caballero-Flores, Gustavo
Núñez, Gabriel
ORCID: Caballero-Flores, Gustavo
Pickard, Joseph M.
Núñez, Gabriel
Venue: Nature Reviews Microbiology
Publisher: Springer Science and Business Media LLC
Published: 2022-12-20
Volume: 21
Issue: 6
Pages: 347-360
ISSN: 1740-1526 (ISSN-L)
1740-1534
DOI: 10.1038/s41579-022-00833-7
PMC: PMC10249723
OpenAlex: W4312065785
Cited by: 474
References: 196
Citations by year: 2026: 160 · 2025: 182 · 2024: 100 · 2023: 32
FWCI: 8.16
Type: journal article
Language: en
Open access: green
www.ncbi.nlm.nih.gov
Licence: www.springernature.com/gp/researchers/text-and-data-mining (tdm)
www.springernature.com/gp/researchers/text-and-data-mining (vor)
Locations: Nature Reviews Microbiology (publishedVersion)
PubMed (publishedVersion)
PubMed Central (acceptedVersion)
Funders: National Institutes of Health (K99-R00)
National Institute of Allergy and Infectious Diseases (K99AI159620, R00AI159620)
National Institute of Diabetes and Digestive and Kidney Diseases (R01DK095782)
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
Health Sciences › Medicine › Infectious Diseases › Clostridium difficile and Clostridium perfringens research
Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant-Microbe Interactions and Immunity
Keywords: gut microbiota, colonization resistance, pathogen colonization, dysbiosis, pathobionts, microbial competition, host immune response, host-microbe interactions, microbiota-based therapy
MeSH terms: Immunity, Microbiota

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

Microbiota-mediated colonization resistance: mechanisms and regulation

Abstract

Overview

Integrity signals

Verification

Claims the paper makes

Claims other papers make about this one

Self-check

Citations

Cites

Cited by

Related

Metadata

Record

About these checks