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Relatedness disequilibrium regression estimates heritability without environmental bias
Open accessPublished version of a preprint
Abstract
Heritability measures the proportion of trait variation that is due to genetic inheritance. Measurement of heritability is important in the nature-versus-nurture debate. However, existing estimates of heritability may be biased by environmental effects. Here, we introduce relatedness disequilibrium regression (RDR), a novel method for estimating heritability. RDR avoids most sources of environmental bias by exploiting variation in relatedness due to random Mendelian segregation. We used a sample of 54,888 Icelanders who had both parents genotyped to estimate the heritability of 14 traits, including height (55.4%, s.e. 4.4%) and educational attainment (17.0%, s.e. 9.4%). Our results suggest that some other estimates of heritability may be inflated by environmental effects.
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“AM (rather than population stratification) is likely to be the primary explanation6, although IGEs could also contribute44.”
From Family-GWAS reveals effects of environment and mating on genetic associations (2024) · cites this paper as [44]
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Cites
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Efficient Bayesian mixed-model analysis increases association power in large cohorts
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Self-citationGenome-wide association study identifies 74 loci associated with educational attainment
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The nature of nurture: Effects of parental genotypes
Kong, A., Thorleifsson, G., Frigge, M. L., Vilhjalmsson, B. J., Young, A. I., Thorgeirsson, T. E., Benonisdottir, S., Oddsson, A., Halldorsson, B. V., Masson, G., et al. (2018) · Science · doi:10.1126/science.aan6877 · Cited by 949
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Research works printed but not linked: 1
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Genome-wide association studies
Uffelmann, E., Huang, Q. Q., Munung, N. S., de Vries, J., Okada, Y., Martin, A. R., Martin, H. C., Lappalainen, T., & Posthuma, D. (2021) · Nature Reviews Methods Primers · doi:10.1038/s43586-021-00056-9 · Cited by 1,849
The nature of nurture: Effects of parental genotypes
Kong, A., Thorleifsson, G., Frigge, M. L., Vilhjalmsson, B. J., Young, A. I., Thorgeirsson, T. E., Benonisdottir, S., Oddsson, A., Halldorsson, B. V., Masson, G., et al. (2018) · Science · doi:10.1126/science.aan6877 · Cited by 949
Self-citationOkbay, A., Wu, Y., Wang, N., Jayashankar, H., Bennett, M., Nehzati, S. M., Sidorenko, J., Kweon, H., Goldman, G., Gjorgjieva, T., et al. (2022) · Nature Genetics · doi:10.1038/s41588-022-01016-z · Cited by 654
Wainschtein, P., Jain, D., Zheng, Z., TOPMed Anthropometry Working Group, Aslibekyan, S. W., Becker, D. M., Bi, W., Brody, J. A., Carlson, J. C., Correa, A., et al. (2022) · Nature Genetics · doi:10.1038/s41588-021-00997-7 · Cited by 519
Variable prediction accuracy of polygenic scores within an ancestry group
Mostafavi, H., Harpak, A., Agarwal, I., Conley, D., Pritchard, J. K., & Przeworski, M. (2020) · eLife · doi:10.7554/elife.48376 · Cited by 457
Metadata
- Authors
- Young, A. I., Frigge, M. L., Gudbjartsson, D. F., Thorleifsson, G., Bjornsdottir, G., Sulem, P., Masson, G., Thorsteinsdottir, U., Stefansson, K., & Kong, A.
- Affiliations
- deCODE Genetics (Iceland) (IS)
- Corresponding author
- Young, Alexander I.
- Kong, Augustine
- Venue
- Nature Genetics
- Published
- 2018-08-13
- Volume
- 50
- Issue
- 9
- Pages
- 1304-1310
- ISSN
- 1061-4036 (ISSN-L)
- 1546-1718
- PMC
- PMC6130754
- OpenAlex
- W2886507777
- Cited by
- 173
- References
- 48
- Citations by year
- 2026: 16 · 2025: 12 · 2024: 29 · 2023: 18 · 2022: 33 · 2021: 27 · 2020: 19 · 2019: 16 · 2018: 3
- FWCI
- 9.94
- Type
- journal article
- Language
- en
- Open access
- green
- doi.org
- Licence
- cc-by-nc-nd
- www.springer.com/tdm (tdm)
- Locations
- Nature Genetics (publishedVersion)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- Wellcome Trust (099670/Z/12/Z, 099670)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Associations and Epidemiology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic and phenotypic traits in livestock
- Social Sciences › Sociology and Political Science › Intergenerational and Educational Inequality Studies
- Keywords
- heritability estimation, environmental bias, Mendelian segregation, genetic relatedness, nature versus nurture, height, educational attainment, genetic epidemiology
- MeSH terms
- Environment, Genotype, Humans, Iceland, Models, Genetic, Phenotype, Genetic Variation, Linkage Disequilibrium, Quantitative Trait, Heritable, Gene-Environment Interaction
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